KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:36 2014 Check: 00 .. Name: ENSBTAP00000015106/1-469 Len: 1490 Check: 5226 Weight: 1.00 Name: ENSP00000446346/1-468 Len: 1490 Check: 190 Weight: 1.00 Name: ENSTTRP00000000343/1-466 Len: 1490 Check: 1226 Weight: 1.00 Name: bmy_08179T0/1-464 Len: 1490 Check: 1305 Weight: 1.00 Name: BACU004681/1-1458 Len: 1490 Check: 7870 Weight: 1.00 // 1 50 ENSBTAP00000015106/1-469 ---------- ---------- ---------- ---------- ---------- ENSP00000446346/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000343/1-466 ---------- ---------- ---------- ---------- ---------- bmy_08179T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU004681/1-1458 MLLIWTLSLL LGAVVGKEIC YQRLGCFSDD SPWAGIVERP IKILPWAPED 51 100 ENSBTAP00000015106/1-469 ---------- ---------- ---------- ---------- ---------- ENSP00000446346/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000343/1-466 ---------- ---------- ---------- ---------- ---------- bmy_08179T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU004681/1-1458 VNTRFLLYTN ENPDSFQELV ADPSTITDSN FKTNRKTRFI IHGFIDKGEE 101 150 ENSBTAP00000015106/1-469 ---------- ---------- ---------- ---------- ---------- ENSP00000446346/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000343/1-466 ---------- ---------- ---------- ---------- ---------- bmy_08179T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU004681/1-1458 NWLHSICKNL FNVESVNCIC VDWKGGSRTG YTQASQNIRI VGAEVAYFID 151 200 ENSBTAP00000015106/1-469 ---------- ---------- ---------- ---------- ---------- ENSP00000446346/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000343/1-466 ---------- ---------- ---------- ---------- ---------- bmy_08179T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU004681/1-1458 VLEFENILKK FSFQQSSFGY SPSKVHVIGH SLGAHAAGES GRRTNGTIGR 201 250 ENSBTAP00000015106/1-469 ---------- ---------- ---------- ---------- ---------- ENSP00000446346/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000343/1-466 ---------- ---------- ---------- ---------- ---------- bmy_08179T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU004681/1-1458 ITGLDPAEPC FEGTPELVRL DPSDAQFVDV IHTDAAPIIP NLGLGMSQIV 251 300 ENSBTAP00000015106/1-469 ---------- ---------- ---------- ---------- ---------- ENSP00000446346/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000343/1-466 ---------- ---------- ---------- ---------- ---------- bmy_08179T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU004681/1-1458 GHLDFFPNGG KEMPGCKKNA LSHIVDIDGL WEGTRDFVAC NHLRSYKYYA 301 350 ENSBTAP00000015106/1-469 ---------- ---------- ---------- ---------- ---------- ENSP00000446346/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000343/1-466 ---------- ---------- ---------- ---------- ---------- bmy_08179T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU004681/1-1458 DSILNPDGFA GFPCASYKVF SANKCFPCPS EGCPQMGHYA DRFPGKTQAE 351 400 ENSBTAP00000015106/1-469 ---------- ---------- ---------- ---------- ---------- ENSP00000446346/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000343/1-466 ---------- ---------- ---------- ---------- ---------- bmy_08179T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU004681/1-1458 GQVIYLNTGD ASNFARWRYK VAVTLSGKKV RGHILVSLFG DRGNSKQYEI 401 450 ENSBTAP00000015106/1-469 ---------- ---------- ---------- ---------- ---------- ENSP00000446346/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000343/1-466 ---------- ---------- ---------- ---------- ---------- bmy_08179T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU004681/1-1458 FKGSLQPANT HSNAFDSDVD VGDMQKVKFI WYNNVINPTL PRVGASKISV 451 500 ENSBTAP00000015106/1-469 ---------- ---------- ---------- ---------- ---------- ENSP00000446346/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000343/1-466 ---------- ---------- ---------- ---------- ---------- bmy_08179T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU004681/1-1458 ERNDGKVSVQ SIRLEYKKTA RALDPEGRKV WNIQQGKEVC YDSIGCFSDS 501 550 ENSBTAP00000015106/1-469 ---------- ---------- ---------- ---------- ---------- ENSP00000446346/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000343/1-466 ---------- ---------- ---------- ---------- ---------- bmy_08179T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU004681/1-1458 EPWAGTAIRP LKVLPWSPED IGTRFLLYTN ENPNNFQILL PSDPSTVEAS 551 600 ENSBTAP00000015106/1-469 ---------- ---------- ---------- ---------- ---------- ENSP00000446346/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000343/1-466 ---------- ---------- ---------- ---------- ---------- bmy_08179T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU004681/1-1458 NFQTNRKTRF IIHGFIDKGD ESWLVDMCKN MFKVEKVNCI CVDWKRGSQT 601 650 ENSBTAP00000015106/1-469 ---------- ---------- ---------- ---------- ---------- ENSP00000446346/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000343/1-466 ---------- ---------- ---------- ---------- ---------- bmy_08179T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU004681/1-1458 TYTQAANNVR VVGAQVAQML AMLKSNYSYS PSQVHLIGHS LGAHVAGEAG 651 700 ENSBTAP00000015106/1-469 ---------- ---------- ---------- ---------- ---------- ENSP00000446346/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000343/1-466 ---------- ---------- ---------- ---------- ---------- bmy_08179T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU004681/1-1458 SKTPGLGRIS GFGTKQQVGH LDFFPNGGEE MPGCKKNALS QIVDLDGIWA 701 750 ENSBTAP00000015106/1-469 ---------- ---------- ---------- ---------- ---------- ENSP00000446346/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000343/1-466 ---------- ---------- ---------- ---------- ---------- bmy_08179T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU004681/1-1458 GTRDFVACNH LRSYKYYSES ILNPDGFAAY PCASYKNFES NKCFPCPDEG 751 800 ENSBTAP00000015106/1-469 ---------- ---------- ---------- ---------- ---------- ENSP00000446346/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000343/1-466 ---------- ---------- ---------- ---------- ---------- bmy_08179T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU004681/1-1458 CPQMGHYADR FAGKTREEQQ KFFLNTGESS KFARWRYGVS ITLSGRTATG 801 850 ENSBTAP00000015106/1-469 ---------- ---------- ---------- ---------- ---------- ENSP00000446346/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000343/1-466 ---------- ---------- ---------- ---------- ---------- bmy_08179T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU004681/1-1458 QIKVALFGNK GNTHQYNVFK GIIRPGSTHS NEFDADIDVG TIEKVKFLWN 851 900 ENSBTAP00000015106/1-469 ---------- ---------- ---------- ---------- ---------- ENSP00000446346/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000343/1-466 ---------- ---------- ---------- ---------- ---------- bmy_08179T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU004681/1-1458 NNVVNPTFPK VGAAKITVQK GEDKTEIFIL TRGIPGCGIC GGGGGNDRSS 901 950 ENSBTAP00000015106/1-469 ---------- ---------- ---------- ---------- ---------- ENSP00000446346/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000343/1-466 ---------- ---------- ---------- ---------- ---------- bmy_08179T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU004681/1-1458 DPKSGQQDTP VRLGEKEILG SWSLIEVWRL VSLVLVPTVF SSPERWRQTA 951 1000 ENSBTAP00000015106/1-469 ---------- ---------- ---------- -------MLP SWTIGLLLLA ENSP00000446346/1-468 ---------- ---------- ---------- -------MLP PWTLGLLLLA ENSTTRP00000000343/1-466 ---------- ---------- ---------- -------MLP SWTIGLLLLA bmy_08179T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU004681/1-1458 ALESGAGASA EPLALPLILQ PRACASGVRA RLSSSSKMLP SWTIGLLLLA 1001 1050 ENSBTAP00000015106/1-469 TVRGKEICYE PFGCFSDEKP WTGILQRPLK LFPWSPEDID AHFLLYTNEN ENSP00000446346/1-468 TVRGRKVCYG QLGCFSDEKP WAGTLQRPVK LLPWSPEDID TRFLLYTNEN ENSTTRP00000000343/1-466 TV--RVVCYK PFGCFSDEKP WTSIFQRPLK LFPWSPKDID THFLLYTNEN bmy_08179T0/1-464 ----KEICYK PFGCFSDEKP WTGILQRPLK LFPWSPKDID AHFLLYTNEN BACU004681/1-1458 TVRGKEICYK PFGCFSDEKP WTGILQRPLK LFPWSPKDID AHFLLYTNEN 1051 1100 ENSBTAP00000015106/1-469 PNNYQRINIT DLATVRASNF QLDRKTRFVI HGFIDDGDSG WPTDLCKKMF ENSP00000446346/1-468 PNNFQLITGT EPDTIEASNF QLDRKTRFII HGFLDKAEDS WPSDMCKKMF ENSTTRP00000000343/1-466 PNNYQRINVT DLSTIEASNF QLDRKTRFVI HGFLDKGEED WIIDLCKKMF bmy_08179T0/1-464 PNNYQRINVT DLATIEASNF QLDRKTRFII HGFLDKGEEN WIIDLCKKMI BACU004681/1-1458 PNNYQRINVT DLATIEASNF QLDRKTRFII HGFLDKGEEN WIIDLCKKMI 1101 1150 ENSBTAP00000015106/1-469 KVEKVNCICV DWEHGAWTKY TQAVHNTRVV GAEIAFFIQG LS-------- ENSP00000446346/1-468 EVEKVNCICV DWRHGSRAMY TQAVQNIRVV GAETAFLIQA LS-------- ENSTTRP00000000343/1-466 KVEKVNCMCV DWKRGARTGY TQAVHNTRVV GAEIAYLIQG LS-------- bmy_08179T0/1-464 KVEKVNCVCV DWKRGARTGY TQAVHNTRVV GAEIAFLIQG LSVNPCLGHI BACU004681/1-1458 KVEKVNCVCV DWKRGARTGY TQAVHNTRVV GAEIAFLIQG LS-------- 1151 1200 ENSBTAP00000015106/1-469 ---------- ---------- ----TELGYG PENVHLIGHS LGAQLAAEAG ENSP00000446346/1-468 ---------- ---------- ----TQLGYS LEDVHVIGHS LGAHTAAEAG ENSTTRP00000000343/1-466 ---------- ---------- ----TQLGYG PENVHLIGHS LGAHTAAEAG bmy_08179T0/1-464 LWVGGRERGR PAPRGTQGQP GDPWTQLGYG PENVHLIGHS LGAHTAAEAG BACU004681/1-1458 ---------- ---------- ----TQLGYD PENVHLIGHS LGAHTAAEAG 1201 1250 ENSBTAP00000015106/1-469 RRLGGQVGRI TVIESWMPCF SNDPTGSLLN PSKSMMVDVM ATESIQLLPF ENSP00000446346/1-468 RRLGGRVGRI TGLDPAGPCF QDEPEEVRLD PSDAVFVDVI HTDSSPIVPS ENSTTRP00000000343/1-466 RRLGGRVGRI TGLDPAQPCF QGTPEEVRLD PSDAMFVDVI HTDSAPIIPF bmy_08179T0/1-464 RRLGGRVGRI TGLDPAQPCF QGTPEEVRLD PSDAMFVDVI HTDSAPIIPF BACU004681/1-1458 RRLGGRVGRI TGLDPAQPCF QGTPEEVRLD PSDAMFVDVI HTDSAPTIPF 1251 1300 ENSBTAP00000015106/1-469 VSTGQTQDWG HCELVPGGGI FLMGCQPSMS RSMIEVLNCG QGIQDFVACS ENSP00000446346/1-468 LGFGMSQKVG HLDFFPNGGK EMPGCKKNVL STITDIDGIW EGIGGFVSCN ENSTTRP00000000343/1-466 LGFGMSQKVG HLDFYPNGGR EMPGCQKNAL STIIDINGIW EGTQDFVACN bmy_08179T0/1-464 LGFGMSQKVG HLDFYPNGGK EMPGCQKNAL STIIDINAIW EGTRDFVACN BACU004681/1-1458 LGFGMSQKVG HLDFYPNGGK EMPGCQKSAL STIIDINAIW EGTRDFVACN 1301 1350 ENSBTAP00000015106/1-469 HLRSYKYYSS SILNPDGFLG YPCASYEEFQ E-GGCFP-CP AGGCPKMGHY ENSP00000446346/1-468 HLRSFEYYSS SVLNPDGFLG YPCASYDEFQ E-SKCFP-CP AEGCPKMGHY ENSTTRP00000000343/1-466 HIRSYKYYSS SILSPDGFLG YPCASYNEFQ E-SGCFP-CP AEGCPKMGHY bmy_08179T0/1-464 HLRSYKYYSS SILSPDGFLG YPCASYNEFQ E-SGCFP-CP AEGCPKMGHY BACU004681/1-1458 HLRSYKYYSS SILSPDGFLG YPCASYNEFQ EVERLFPLXX AEGCPKMGHY 1351 1400 ENSBTAP00000015106/1-469 ADQFQGKTSA VGQTFFLNTG SSGNFTSWRY RVSVTLAGTK KVRGSIRIAL ENSP00000446346/1-468 ADQFKGKTSA VEQTFFLNTG ESGNFTS-KY KISVTLSGKE KVNGYIRIAL ENSTTRP00000000343/1-466 ADQFQGKTSA VGQTFFLNTG SSGNFTR-KY RVSVTLAGKK KVSGYIRIAL bmy_08179T0/1-464 ADRFRGKTSA VGQTFFLNTG SSGNFTRWRY RVSVTLAGKK KVSGYIKIAL BACU004681/1-1458 ADQFQGKTRA VGQTFFLNTG SSGNFTRWRY RVSVTLAGKQ KVSGHIKIAL 1401 1450 ENSBTAP00000015106/1-469 YGSNGNSKQY QIFKGSLQPN ASHTHDIDVD LNVGKVQKVK FLWNNNVINL ENSP00000446346/1-468 YGSNENSKQY EIFKGSLKPD ASHTCAIDVD FNVGKIQKVK FLWNKRGINL ENSTTRP00000000343/1-466 YGSNGNSKQY EIFKGSLRPD ASHMHDIDVD FNVGEVQKVK FLWNNNVINL bmy_08179T0/1-464 YGSNGNSKQY EIFKGSLQPD ASHMHDIDVD LNVGKVQKVK FLWNNNVINL BACU004681/1-1458 YGSNGNSKQY EIFKGSLQPN ASHMHDIDVD LNVGKVQKVK FLWNKNVINL 1451 1500 ENSBTAP00000015106/1-469 FWPKLGASRV TVQGGEDRTE YNFCSNDTMR ENALQTLYPC ENSP00000446346/1-468 SEPKLGASQI TVQSGEDGTE YNFCSSDTVE ENVLQSLYPC ENSTTRP00000000343/1-466 FRPKLGASRI TVQSGEDRAE YNFCSSDMVQ EDVLQTLYPC bmy_08179T0/1-464 FQPKLGASRI TVQSGEDRAE ---------- ---------- BACU004681/1-1458 FQAKLGASRI TVQSGEDRAE YNFCSSDMVQ EDVLQTLYPC