KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:39 2014 Check: 00 .. Name: bmy_15317T0/1-895 Len: 1303 Check: 2947 Weight: 1.00 Name: ENSTTRP00000002447/1-1222 Len: 1303 Check: 4736 Weight: 1.00 Name: ENSP00000293190/1-1233 Len: 1303 Check: 1375 Weight: 1.00 Name: BACU011496/1-715 Len: 1303 Check: 234 Weight: 1.00 Name: ENSBTAP00000015137/1-1242 Len: 1303 Check: 3399 Weight: 1.00 // 1 50 bmy_15317T0/1-895 MEGGKPDGKA EAAHSEGSGS RGAAQPGSLG SRETARLDPP VDMGGALGPA ENSTTRP00000002447/1-1222 ---------- ---------- ---------- ---------- --MGGALGPV ENSP00000293190/1-1233 ---------- ---------- ---------- ---------- --MGGALGPA BACU011496/1-715 ---------- ---------- ---------- ---------- --MGGALGPA ENSBTAP00000015137/1-1242 ---------- ---------- ---------V PTLLSPQDSP VDMGVALGPA 51 100 bmy_15317T0/1-895 LLLTSLLGAW AGLGPGQGEQ AVTVAVVFGS SGPLQAQART RLTPQSFLDL ENSTTRP00000002447/1-1222 LLLTSLLGAW AGLGPGQGEQ AMTVAVVFGS SGPPEAQARI RLTPQSFLDL ENSP00000293190/1-1233 LLLTSLFGAW AGLGPGQGEQ GMTVAVVFSS SGPPQAQFRA RLTPQSFLDL BACU011496/1-715 LLLTSLLGAW AGLGPAQGEQ AVTVAVVFGS SGPPQAQART RLTPQSFLDL ENSBTAP00000015137/1-1242 LLLTSLLGAW AGLGPGQGEQ TVTVAVVFGS SGSPQAQART RLTPQSFLDL 101 150 bmy_15317T0/1-895 PLEIQPLTVG VNDSNPSSLL TQICGLLGTA RVHGIVFEDN VDTEAVAQIL ENSTTRP00000002447/1-1222 PLEIQPLTVG VNNTNPSSLL TQICGLLGTA RVHGIVFEDN VDTEAVAQIL ENSP00000293190/1-1233 PLEIQPLTVG VNTTNPSSLL TQICGLLGAA HVHGIVFEDN VDTEAVAQIL BACU011496/1-715 PLEIQPLTVG VNDSNPSSLL TQICGLLGTA RVHGIVFEDN VDTEAVAQIL ENSBTAP00000015137/1-1242 PLEIQPLSVG INNTNPSSLL TQICGLLGAA RVHGIVFEDN VGTEAVAQIL 151 200 bmy_15317T0/1-895 DFISFQTHVP ILSISGGSAV VLTPK----- ---------- ---------- ENSTTRP00000002447/1-1222 DFISFQTHVP ILSISGGSAV VLTPKEPGSA FLQLGVSLEQ QLQVLFKVLE ENSP00000293190/1-1233 DFISSQTHVP ILSISGGSAV VLTPKEPGSA FLQLGVSLEQ QLQVLFKVLE BACU011496/1-715 DFISFQAHVP ILSISGGSAV VLTPK----- ---------- ---------- ENSBTAP00000015137/1-1242 DFISSQTHVP ILSISGGSAV VLTPKESGSA FLQLGVSLEQ QLQVLFKVLE 201 250 bmy_15317T0/1-895 ---------- ---------- ---------- ---------- ----LGPGGT ENSTTRP00000002447/1-1222 EYDWSAFAVI TSLHPGHTLF LKSVRAVADA NYVGWRLLDV LTLELGPGGT ENSP00000293190/1-1233 EYDWSAFAVI TSLHPGHALF LEGVRAVADA SHVSWRLLDV VTLELGPGGP BACU011496/1-715 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015137/1-1242 EYDWSAFAVI TSLHPGHALF LEGVRAVTDA SYLSWRLLDV LTLELGPGGA 251 300 bmy_15317T0/1-895 RAHTQRLLRQ LDAPVLVAYC SREEAEVLFA EAAQAGLVGP GHVWLVPNLA ENSTTRP00000002447/1-1222 RAHTQRLLRQ IDAPVLVAYC SREEAEVLFA EAAQAGLVGP GHVWLVPNLA ENSP00000293190/1-1233 RARTQRLLRQ LDAPVFVAYC SREEAEVLFA EAAQAGLVGP GHVWLVPNLA BACU011496/1-715 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015137/1-1242 RQHTQRLLRQ LDAPVLVAYC SREEAEVLFA EAAQAGLVGP GHVWLVPSLA 301 350 bmy_15317T0/1-895 LGSTDAPPAA FPVGLISVVT ESWRLSLRQK VRDGVAILAL GAHGYRRQHG ENSTTRP00000002447/1-1222 LGSTDAPPAS FPVGLISVVT ESWRLSLRQK VRDGVAILAL GAHGYRRQHG ENSP00000293190/1-1233 LGSTDAPPAT FPVGLISVVT ESWRLSLRQK VRDGVAILAL GAHSYWRQHG BACU011496/1-715 ---------- ---------- ---------K VRDGVAILAL GAHGYRRQHG ENSBTAP00000015137/1-1242 LGSTDTPPAA FPVGLISVVT ESWRLSLRQK VRDGVAILAL GAHGYRRQHG 351 400 bmy_15317T0/1-895 ALPAPAGECR GHPGP-APA- ---------- -----ECHLG GPGLLLQP-- ENSTTRP00000002447/1-1222 TLPTPAGECR GHPGPVSPAR KAFYRHLLNV TWEGRDFSFS PGGYLVQPTM ENSP00000293190/1-1233 TLPAPAGDCR VHPGPVSPAR EAFYRHLLNV TWEGRDFSFS PGGYLVQPTM BACU011496/1-715 ALPAPAGECR AHPGPVSPAR KAFYRHLLNV TWEGRDFSFS PGGYLVQPTM ENSBTAP00000015137/1-1242 ALPAPAGDCR AHPGPLSPAR EAFYRHLLNV TWEGRDFSFG PGGYLVQPTM 401 450 bmy_15317T0/1-895 ---------- W-----WVPG PAH------- ---------- ---------- ENSTTRP00000002447/1-1222 VVIALNRHRL WEMVGRWDHG VLHMKYPVWP RYSASLQPVV DSRHLTVATL ENSP00000293190/1-1233 VVIALNRHRL WEMVGRWEHG VLYMKYPVWP RYSASLQPVV DSRHLTVATL BACU011496/1-715 VVIALNRHRL WEMVGRWDHG VLHMKYPVWP RYSASLQPVV DSRHLTVATL ENSBTAP00000015137/1-1242 VVIALNRHRL WEMVGRWDHG ILHMKYPVWP RYSASLQPVV DSRHLTVATL 451 500 bmy_15317T0/1-895 ---------- ----HGGDRP QPAP------ ----PLGD-- ---------- ENSTTRP00000002447/1-1222 EERPFVIVES PDPGTGGCVP NTVPCRRHGN HTF-SSGDTA PYTKLCCKGF ENSP00000293190/1-1233 EERPFVIVES PDPGTGGCVP NTVPCRRQSN HTF-SSGDVA PYTKLCCKGF BACU011496/1-715 EE----LVES PDPGTGGCVP STVPCRRHGN HTF-SSGDTA PYTKLCCKGF ENSBTAP00000015137/1-1242 EERPFVIVES PDPGTGGCVP NTVPCRRQSN HTFSSSGDAA PYTKLCCKGF 501 550 bmy_15317T0/1-895 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002447/1-1222 CIDILKKLAK VVKFSYDLYL VTNGKHGKRV RGVWNGMIGE VYYKRADMAI ENSP00000293190/1-1233 CIDILKKLAR VVKFSYDLYL VTNGKHGKRV RGVWNGMIGE VYYKRADMAI BACU011496/1-715 CIDILKKLAK VVKFSYDLYL VTNGKHGKRV RGVWNGMIGE VYYKRADMAI ENSBTAP00000015137/1-1242 CIDILKKLAR VVRFSYDLYL VTNGKHGKRV RGVWNGMIGE VYYKRADMAI 551 600 bmy_15317T0/1-895 ---------- ---------- ---------- ---------- -EPYSPAVWV ENSTTRP00000002447/1-1222 GSLTINEERS EIVDFSVPFV ETGISVMVAR SNGTVSPSAF LEPYSPAVWV ENSP00000293190/1-1233 GSLTINEERS EIVDFSVPFV ETGISVMVAR SNGTVSPSAF LEPYSPAVWV BACU011496/1-715 GSLTINEERS EIVDFSVPFV ETGISVMVAR SNGTVSPSAF LEPYSPAVWV ENSBTAP00000015137/1-1242 GSLTINEERS EIVDFSVPFV ETGISVMVAR SNGTVSPSAF LEPYSPAVWV 601 650 bmy_15317T0/1-895 MMFVMCLTVV AITVFMFEYF SPVSYNRSLT SGKSQLPPGP GSRGRAGTSR ENSTTRP00000002447/1-1222 MMFVMCLTVV AITVFMFEYF SPVSYNQNLT SGK------- ---------- ENSP00000293190/1-1233 MMFVMCLTVV AITVFMFEYF SPVSYNQNLT RGK------- ---------- BACU011496/1-715 MMFVMCLTVV AITVFTFEYF SPVSYNRSLT SGK------- ---------- ENSBTAP00000015137/1-1242 MMFVMCLTVV AITVFMFEYF SPVSYNQNLT SGK------- ---------- 651 700 bmy_15317T0/1-895 RESGGPSFTI GKSVWLLWAL VFNNSVPIEN PRGTTSKIMV LVWAFFAVIF ENSTTRP00000002447/1-1222 -KSGGPSFTI GKSVWLLWAL VFNNSVPIEN PRGTTSKIMV LVWAFFAVIF ENSP00000293190/1-1233 -KSGGPAFTI GKSVWLLWAL VFNNSVPIEN PRGTTSKIMV LVWAFFAVIF BACU011496/1-715 -KSGGPSFTI GKSVWLLWAL VFNNSVPIEN PRGTTSKIMV LVWAFFAVIF ENSBTAP00000015137/1-1242 -RSGGPSFTI GKSVWLLWAL VFNNSVPIEN PRGTTSKIMV LVWAFFAVIF 701 750 bmy_15317T0/1-895 LASYTANLAA FMIQEQYIDT VSGLSDKKFQ RPQDQYPPFR FGTVPNGSTE ENSTTRP00000002447/1-1222 LASYTANLDA FMI-EQYIDT VSGXXXXXFQ RHQDQSPPLR LGTVPNGSRE ENSP00000293190/1-1233 LASYTANLAA FMIQEQYIDT VSGLSDKKFQ RPQDQYPPFR FGTVPNGSTE BACU011496/1-715 LASYTANLAA FMIQEQYIDT VSGLSDKKFQ RPQDQYPPFR FGTVPNGSTE ENSBTAP00000015137/1-1242 LASYTANLAA FMIQEQYIDT VSGLSDKKFQ RPQDQYPPFR FGTVPNGSTE 751 800 bmy_15317T0/1-895 RNIRSNYRDM HTHMVKFNQR SVEDALSSLK MGKLDAFIYD AAVLNYMAGK ENSTTRP00000002447/1-1222 RNISSISRDM HTHMV-FNQR SVEDALSSLK MGKLDAFIYD AAVLNYMAGK ENSP00000293190/1-1233 RNIRSNYRDM HTHMVKFNQR SVEDALTSLK MGKLDAFIYD AAVLNYMAGK BACU011496/1-715 RNIRSNYRDM HTHMVKFNQR SVEDALSSLK MGKLDAFIYD AAVLNYMAGK ENSBTAP00000015137/1-1242 RNIRSNYRDM HTHMVKFNQR SVEDALTSLK MGKLDAFIYD AAVLNYMAGK 801 850 bmy_15317T0/1-895 DEGCKLVTIG SGKVFATTGY GIAMQKDSHW KRAIDLALLQ FLGDGETQKL ENSTTRP00000002447/1-1222 DEGCKLVTIG SGKVFATTGY GIAMQKDSHW KRAIDLALLQ FLGDGETQKL ENSP00000293190/1-1233 DEGCKLVTIG SGKVFATTGY GIAMQKDSHW KRAIDLALLQ FLGDGETQKL BACU011496/1-715 DEGCKLVTIG SGKVFATTGY GIAMQKDSHW KRAIDLALLQ FLGDGETQKL ENSBTAP00000015137/1-1242 DEGCKLVTIG SGKVFATTGY GIAMQKDSHW KRAIDLALLQ FLGDGETQKL 851 900 bmy_15317T0/1-895 ETVWLSGICQ NEKNEVMSSK LDIDNMAGVF YMLLVAMGLA LLVFAWEHLV ENSTTRP00000002447/1-1222 ETVWLSGICQ NEKNEVMSSK LDIDNMAGVF YMLLVAMVLA LLVFAWEHLV ENSP00000293190/1-1233 ETVWLSGICQ NEKNEVMSSK LDIDNMAGVF YMLLVAMGLA LLVFAWEHLV BACU011496/1-715 ETVWLSGICQ NEKNEVMSSK LDIDNMAGVF YMLLVAMGLA LLVFAWEHLV ENSBTAP00000015137/1-1242 ETVWLSGICQ NEKNEVMSSK LDIDNMAGVF YMLLVAMGLA LLVFAWEHLV 901 950 bmy_15317T0/1-895 YRKLRHSVPS ASR--HLQLL QRG------- ---------- ---------- ENSTTRP00000002447/1-1222 YRMLRHSLPN ASRLDFLLAF NRXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000293190/1-1233 YWKLRHSVPN SSQLDFLLAF SRGIYSCFSG VQSLASPPRQ ASPDLTASSA BACU011496/1-715 YRKLRHSVPS ASRLDFLLAF SR-------- ---------- ---------- ENSBTAP00000015137/1-1242 YWKLRHSVPN TSRLDFLLAF SRGIYSCFSG VQSLASPARP PSPDLTAGSA 951 1000 bmy_15317T0/1-895 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002447/1-1222 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000293190/1-1233 QASVLKMLQA ARDMVTTAGV SSSLDRATRT IENWGGGRRA PPPSPCPTPR BACU011496/1-715 ---------- -------VGA HSTLDR---- ---------- ---------- ENSBTAP00000015137/1-1242 QASVLKMLQA ARDMVTTAGV SSSLDRATRT IESWGCGRPA PAPPP----- 1001 1050 bmy_15317T0/1-895 ---------- ---------- ---------- ------AEPG QPRAAAQPGP ENSTTRP00000002447/1-1222 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXRAPQPPV RPPTPGPSIP ENSP00000293190/1-1233 SGPSPCLPTP DPPPEPSPTG WGPPDGGRAA LVRRAPQPPG RPPTPGPPLS BACU011496/1-715 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015137/1-1242 ACPGPRPPTP APPREPSPTG WRPPGGGRAA LGRRAAQPSG RPPTPRPALP 1051 1100 bmy_15317T0/1-895 HRRLGPGQRA QDAAGGARHG DHG------- ---------- ---------- ENSTTRP00000002447/1-1222 DVSQVSGRPD WEARCPSRTG RGGRHLSAS- -----ERRQS PERCHYSSFP ENSP00000293190/1-1233 DVSRVSRRPA WEARWPVRTG HCGRHLSAS- -----ERPLS PARCHYSSFP BACU011496/1-715 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015137/1-1242 DVSREASRRA WEARWPLRPG RRGRRFSASE RRARPERPLS PERGHYSSFP 1101 1150 bmy_15317T0/1-895 GPDRSGCPFL PLFPEPPEPE DLSLLGPEQL ARREALLRAA WARGSRPRHA ENSTTRP00000002447/1-1222 RAERSGCTFV PLLPETPEPE DLPLLRPEQL ARREALMRAA WARGSRPRHA ENSP00000293190/1-1233 RADRSGRPFL PLFPEL---E DLPLLGPEQL ARREALLHAA WARGSRPRHA BACU011496/1-715 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015137/1-1242 RADRSGRPFL PLFPEPPEPE DLPLLGPEQL ARREALLRAA WARGSRPRHA 1151 1200 bmy_15317T0/1-895 SLPSSVTEAF ARPSSEPSRC ARPACG---- -----RWTQA QSMRLPSYRE ENSTTRP00000002447/1-1222 SLPSSVTE-F ARPSSEPSWC P-PACG---- -----RWTQA Q-MRLQSYRE ENSP00000293190/1-1233 SLPSSVAEAF ARPSSLPAGC TGPACARPDG HSACRRLAQA QSMCLPIYRE BACU011496/1-715 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015137/1-1242 SLPSSVAEAF TRPSSGPARC ARPACG---- -----RLIPA QSMRLPSYRE 1201 1250 bmy_15317T0/1-895 ACQEGVWAGI PPWPHGQHAC LHAHAHLPVC WGAVCPHLPP CASHGPWLPG ENSTTRP00000002447/1-1222 AYQEQVWAGA PSWPHGQHAC LHAHAHLPLC WGAVCPHLPP CVSHGPWHPE ENSP00000293190/1-1233 ACQEGEQAGA PAWQHRQHVC LHAHAHLPFC WGAVCPHLPP CASHGSWLSG BACU011496/1-715 ---------- ---------- ---------- -----PQL-- ---------- ENSBTAP00000015137/1-1242 ACQEGLWAGP PAWPHGQHTC LHAHAHLPLC WGVVCSHLPP CAAHGPWLPG 1251 1300 bmy_15317T0/1-895 AWGPPGHRGR TLGLSTEYRD TGGLEEVSRV ACGVHGFPRP CTWRRISSLE ENSTTRP00000002447/1-1222 AWGPPGHRGR TLGLSTEYRD TGGLEEVSRV ACGMHGFPRP CTWRRISSLE ENSP00000293190/1-1233 AWGPLGHRGR TLGLGTGYRD SGGLDEISRV ARGTQGFPGP CTWRRISSLE BACU011496/1-715 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015137/1-1242 AWGPPGHRDR TLGLSPEYSN SGELERVSRA ASGTHGFPRP CTWRRISSLE 1301 1350 bmy_15317T0/1-895 SEV ENSTTRP00000002447/1-1222 SEV ENSP00000293190/1-1233 SEV BACU011496/1-715 --- ENSBTAP00000015137/1-1242 SEV