KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:45 2014 Check: 00 .. Name: ENSTTRP00000006024/1-1509 Len: 1528 Check: 1755 Weight: 1.00 Name: ENSP00000393922/1-1516 Len: 1528 Check: 997 Weight: 1.00 Name: ENSBTAP00000015156/1-1510 Len: 1528 Check: 5005 Weight: 1.00 Name: bmy_09976T0/1-1513 Len: 1528 Check: 5805 Weight: 1.00 Name: BACU017512/1-1505 Len: 1528 Check: 2240 Weight: 1.00 // 1 50 ENSTTRP00000006024/1-1509 --------MD SPPKLTGETL IVHHIPLVHC QVPDRQCCGG ASAGSGSTRP ENSP00000393922/1-1516 --------MD SPPKLTGETL IVHHIPLVHC QVPDRQCCGG AGGGGGSTRP ENSBTAP00000015156/1-1510 MPLFELSRMD SPPKLTGETL IVHHIPLVHC QVPDRQCCGG GGGGSGSTRP bmy_09976T0/1-1513 MPLFELSRMD SPPKLTGETL IVHHIPLVHC QVPDRQCCGG ASAGGGSTRP BACU017512/1-1505 --------MD SPPKLTGETL IVHHIPLVHC QVPDRQCCGG ASAGGGSTRP 51 100 ENSTTRP00000006024/1-1509 NPFCPPELGI TQPDQDLGQA DSLLYNSLHS APGGSARSAD STKNRGRDGR ENSP00000393922/1-1516 NPFCPPELGI TQPDQDLGQA DSLLFSSLHS TPGGTARSID STKSRSRDGR ENSBTAP00000015156/1-1510 NPFCPPELGI TQPDQDLGQA DSLLYSSLQS APGGSTRSAD SAKSRGRDGR bmy_09976T0/1-1513 NPFCPPELGI TQPDQDLGQA DSLLYNSLHS APGGSARSAD STKNRGRDGR BACU017512/1-1505 NPFCPPELGI TQPDQDLGQA DSLLYNSLHS APGGSARSAD STKNRGRDGR 101 150 ENSTTRP00000006024/1-1509 GPGAPKRHNP FLLQEGTAEP GLGDLYDDSI GDSATQQSFH LHGAGQPTFH ENSP00000393922/1-1516 GPGAPKRHNP FLLQEGVGEP GLGDLYDDSI GDSATQQSFH LHGTGQPNFH ENSBTAP00000015156/1-1510 GPGAPKRHNP FLLQTGVAEP GLGDLYEDSI SDSAAQQSFH LHRAGQPTFH bmy_09976T0/1-1513 GSGAPKRHNP FLLQGGVAEP RLGDLYDDSI GDGATQQSFH LHGAGQPTFH BACU017512/1-1505 GPGAPKRHNP FLLQEGVAEP RPGDLYDDSI GDGATQQSFH LHRAGQPTFH 151 200 ENSTTRP00000006024/1-1509 PSSFQLPPPG PRVGRPWEAT HSRAGVVEGQ EQEPVTTLDA QQCSSSHSCR ENSP00000393922/1-1516 LSSFQLPPSG PRVGRPWGTT RSRAGVVEGQ EQEPVMTLDT QQCGTSHCCR ENSBTAP00000015156/1-1510 LSSFQLPPPG PRVGRPWGAA RSRAGVVEGQ EQEPVTILDA PHCSTGRCCR bmy_09976T0/1-1513 LSSFQLPPPG PRVGRPWGAT RSRAGVVEGQ EQEPVTTLDG QQCSTSHSCR BACU017512/1-1505 LSSFQLPPPG PRVGRPWGAT RSRAGVVEGQ EQEPVTTLDA QQCSTSHSCR 201 250 ENSTTRP00000006024/1-1509 PEPEAETMEL DEYGGPGGSG SGGGASDTSG FSFDQEWKLS SDESPRNPRC ENSP00000393922/1-1516 PELEAETMEL DECGGPGGSG SGGGASDTSG FSFDQEWKLS SDESPRNPGC ENSBTAP00000015156/1-1510 PEPEAETMEL DECGGPGGSG SGGGASDTSG FSFDQEWKLS SDESPRNPRC bmy_09976T0/1-1513 PEPEAETMEL DEYGGPGGSG SGGGASDTSG FSFDQEWKLS SDESPRNPRC BACU017512/1-1505 PEPEAETMEL DEYGGPGGSG SGGGASDTSG FSFDQEWKLS SDESPRNPRC 251 300 ENSTTRP00000006024/1-1509 SGSGPQHCRC SSTSSQSEAA DQSMGYVSDS SCNSSDGVLV TFSTLYNKMH ENSP00000393922/1-1516 SGSGDQHCRC SSTSSQSEAA DQSMGYVSDS SCNSSDGVLV TFSTLYNKMH ENSBTAP00000015156/1-1510 SGSGTQHCCC SSTSSQSEAA DQSMGYVSDS SCNSSDGVLV TFSTLYNKMH bmy_09976T0/1-1513 SGSGPQHCRC SSTSSPSEAA DQSMGYVSDS SCNSSDGVLV TFSTLYNKMH BACU017512/1-1505 SGSGPQHCRC SSTSSPSEAA DQSMGYVSDS SCNSSDGVLV TFSTLYNKMH 301 350 ENSTTRP00000006024/1-1509 GNSHANLNSA PQSCSDSSFC SHSDPSAFYL DLQPSPAESK MSCESHHPDS ENSP00000393922/1-1516 GTPRANLNSA PQSCSDSSFC SHSDPGAFYL DLQPSPFESK MSYESHHPES ENSBTAP00000015156/1-1510 GNSRANLNSA PQSCSDSSFY SHSDPGAFYL DLQPSPAESK MSCESHHPDS bmy_09976T0/1-1513 GNSHANLNSA PQSCSDSSFC SHSDPSAFYL DLQPSPAESK MSCESHHPDS BACU017512/1-1505 GNSHANLNSA PQSCSDSSFC SHSDPSAFYL DLQPSPAESK MSCESHHPDS 351 400 ENSTTRP00000006024/1-1509 GGREGGYGCP HASSPELDAN CNSYRSHCEP CPAVADLTAC FQSQARLVVA ENSP00000393922/1-1516 GGREGGYGCP HASSPELDAN CNSYRPHCEP CPAVADLTAC FQSQARLVVA ENSBTAP00000015156/1-1510 GGREGGYGCP HASSPELDAN CNSYRPHCEP CPAVADLTAC FQSQARLVVA bmy_09976T0/1-1513 GGREGGYGCP HASSPELDAN CNSYRSHCEP CPAVADLTAC FQSQARLVVA BACU017512/1-1505 GGRECGYGCP HASSPELDAN CNSYRSHCEP CPAVADLTAC FQSQARLVVA 401 450 ENSTTRP00000006024/1-1509 TQNYYKLVTC DLSSQSSPSP AGSSITSCSE EHTKISPAPG PGPDPGPSQP ENSP00000393922/1-1516 TQNYYKLVTC DLSSQSSPSP AGSSITSCSE EHTKISPPPG PGPDPGPSQP ENSBTAP00000015156/1-1510 TQNYYKLVTC DLSSQSSPSP AGSSVTSCSE EHTKISPAPG PGPDPGPSQP bmy_09976T0/1-1513 TQNYYKLVTC DLSSQSSPSP AGSSITSCSE EHTKISPAPG PGPDPGPSQP BACU017512/1-1505 TQNYYKLVTC DLSSQSSPSP AGSSITSCSE EHTKISPAPG PGPDPGPSQP 451 500 ENSTTRP00000006024/1-1509 SEYYLFQKPE VQPEEQEAVG SEVEAPAPVG PTVIEGQVYT NTSPPNLSTG ENSP00000393922/1-1516 SEYYLFQKPE VQPEEQEAVS SSTQAAAAVG PTVLEGQVYT NTSPPNLSTG ENSBTAP00000015156/1-1510 SEYYLFQKPE VQPEEQEAVG SEVEAEAPMG RTVIEGQVYT NTSPPNLSIG bmy_09976T0/1-1513 SEYYLFQKPE VQPEEQEAVG SEVEAPAPVG PTVIEGQVYT NTSPPNLSTG BACU017512/1-1505 SEYYLFQKPE VQPEEQEAVG SEVEAPAPVG PSVIEGQVYT NTSPPNLSTG 501 550 ENSTTRP00000006024/1-1509 RQRSRSYDRG LERSPPIRLG SLERMLSCPV RLSEGPAALT GPSSPPRRVT ENSP00000393922/1-1516 RQRSRSYDRS LQRSPPVRLG SLERMLSCPV RLSEGPAAMA GPGSPPRRVT ENSBTAP00000015156/1-1510 RQRSRSYDRS LERSPPVRLG SLERMLSCPV RLSEGPAAIT GPSSPPRRVT bmy_09976T0/1-1513 RQRSRSYDRG LERSPPIRLG SLERMLSCPV RLSEGPAALT GPSSPPRRVT BACU017512/1-1505 RQRSRSYDRG LERSPPIRLG SLERMLSCPV RLSEGPAALT GPSSPPRRVT 551 600 ENSTTRP00000006024/1-1509 SFAELAKGRK KTAGSGSPPL RVSAGDSSQE FSPIQEAQQD RVGPLDEGTH ENSP00000393922/1-1516 SFAELAKGRK KTGGSGSPPL RVSVGDSSQE FSPIQEAQQD RGAPLDEGTC ENSBTAP00000015156/1-1510 SFAELAKGRK KAAGSGSPPL RASTGDSSQE FSLIQEAQQD RVGPLDEGTH bmy_09976T0/1-1513 SFAELAKGRK KAAGSGSPPL RVSAGDSSQE FSPIQEAQQD RVGPLDEGTH BACU017512/1-1505 SFAELAKGRK KAAGSGSPPL RVSAGDSSQE FSPIQEAQQD RVGPLDEGTH 601 650 ENSTTRP00000006024/1-1509 CSHSLPPMPL GPGLDLVGPE ---PWSTQVC QGLQSSEMPP AGLRAAGQGP ENSP00000393922/1-1516 CSHSLPPMPL GPGMDLLGPD PSPPWSTQVC QGPHSSEMPP AGLRATGQGP ENSBTAP00000015156/1-1510 CSHSLPPMPL EPGMDLVGPE ---PWSTQVC QGSQSSEMPP AGLRAAGQGP bmy_09976T0/1-1513 CSHSLPPMPL GPGIDLVGPE ---PWSTQVC QGPQSSEMPP AGLRAAGQGP BACU017512/1-1505 CSHSLPPMPL GPGIDLVGPE ---PWSTQVC QGPQSSEMPP AGLRAAGQGP 651 700 ENSTTRP00000006024/1-1509 LAQLMDPRPA LPGSPASSHT QRDARARADX XXXXXXXXXX XXXXXXXXXX ENSP00000393922/1-1516 LAQLMDPGPA LPGSPANSHT QRDARARADG GGTESRPVLR YSKEQRPTTL ENSBTAP00000015156/1-1510 LAQLMDPGPA LPGSPANSHT QRDARAKADG GGAESRPVLR YSKEQRPTTL bmy_09976T0/1-1513 LAQLMDPGPA LPGSPASSHT QRDARARADG GGAESRPVLR YSKEQRPTTL BACU017512/1-1505 LAQLMDPGPA LPGSPASSHT QRDARARADG GGAESRPVLR YSKEQRPTTL 701 750 ENSTTRP00000006024/1-1509 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000393922/1-1516 PIQPFVFQHH FPKQLAKARA LHSLSQLYSL SGCSRTQQPA PLAAPAAQVS ENSBTAP00000015156/1-1510 PIQPFVFQHH FPKQLAKARA LHSLSQLYSL SGCSRAPQPA PAAAPTAQGP bmy_09976T0/1-1513 PIQPFVFQHH FPKQLAKSRA LHSLSQLYSL SGCTRAPQRA PLAAPTAQVP BACU017512/1-1505 PIQPFVFQHH FPKQLAKSRA LHSLSQLYSL SGCTRAPQRA PLAAPAAQVP 751 800 ENSTTRP00000006024/1-1509 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000393922/1-1516 VPAPSGEPQA STPRATGRGA RKAGSEPETS RPSPLGSYSP IRSVGPFGPS ENSBTAP00000015156/1-1510 GPAPSGEPQA P----THRGA RKARPEPETS RPSPLGSYSP IRSTGPFGPS bmy_09976T0/1-1513 AQAPSGEFQA S----TNGGA RKAGPEPQTS RPSPLGSYSP IRSAGPFGPS BACU017512/1-1505 AQAPSGEFQA P----TKGGA RRAGPEPQTS RPSPLGSYSP IRSAGPFGPS 801 850 ENSTTRP00000006024/1-1509 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000393922/1-1516 TDSSASTSCS PPPEQPTATE SLPPWSHSCP SAVRPATSQQ PQKEDQKILT ENSBTAP00000015156/1-1510 TDSSASTSCS PLPEQATATE SPPPWGLSCP PAVRPAVSQQ PQKEDPKILT bmy_09976T0/1-1513 TNSSASTSCS PPPEQTTATE SPPPWGRSCP PAVRPATSQQ PQKEHQKILT BACU017512/1-1505 TDSSASTSCS PPPEQTTATE SPPPWARSCP PAVRPATSQQ PQKEHQKILT 851 900 ENSTTRP00000006024/1-1509 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000393922/1-1516 LTEYRLHGTG SLPPLGSWRS GLSRAESLAR GGGEGSMATR PSNANHLSPQ ENSBTAP00000015156/1-1510 LAEYRLHGTG SLPPLGSWRS SLGRAESLAR GGGEGSMASR PSNANHLSPQ bmy_09976T0/1-1513 LAEYRLHGTG SLPPLGSWRS SLSRAESLAR GGGEGSMASR PNNANHLSPQ BACU017512/1-1505 LAEYRLHGTG SLPPLGSWRS SLSRAESLAR GGGEGSMASR PNNANHLSPQ 901 950 ENSTTRP00000006024/1-1509 ALKWREYRRI NPLGPPGLSG SLDRRPQDGR LARRNPIFEF PGSLSAAGHL ENSP00000393922/1-1516 ALKWREYRRK NPLGPPGLSG SLDRRSQEAR LARRNPIFEF PGSLSAASHL ENSBTAP00000015156/1-1510 ALKWREYRRK NPLGPPGLSG SLDRRPQDAR LARRNPIFEF PGSLGAAGHL bmy_09976T0/1-1513 ALKWREYRRK NPLGPPGLSG SLDRRPQDGR LARRNPIFEF PGSLGAAGHL BACU017512/1-1505 ALKWREYRRK NPLGPPGLSG SLDRRPQDGR LARRNPIFEF PGSLGAAGHL 951 1000 ENSTTRP00000006024/1-1509 NCRLNGQVVK PLPLTCPDFQ DPFSLTEKPP AEFCLSPDGN SEAVSIDLLQ ENSP00000393922/1-1516 NCRLNGQAVK PLPLTCPDFQ DPFSLTEKPP AEFCLSPDGS SEAISIDLLQ ENSBTAP00000015156/1-1510 NCRLNGQVVK PLPLTCPDFQ DPFSLTEKPP AEFCLSPDGS SEAVSIDVLQ bmy_09976T0/1-1513 NCRLNGQVVK PLPLTCPDFQ DPFSLTEKPP AEFCLSPDGN SEAVSIDLLQ BACU017512/1-1505 NCRLNGQVVK PLPLTCPDFQ DPFSLTEKPP AEFCLSPDGN SEAVSIDLLQ 1001 1050 ENSTTRP00000006024/1-1509 KKGLVKAINT AVDLIVAHFG TSRDPGVKAK LGNSSVSPNV GHLVLKYLCP ENSP00000393922/1-1516 KKGLVKAVNI AVDLIVAHFG TSRDPGVKAK LGNSSVSPNV GHLVLKYLCP ENSBTAP00000015156/1-1510 KKGLVKAVNT AVDLIVAHFG TSRDPGVKAK LGNSSVSPNV GHLVLKYLCP bmy_09976T0/1-1513 KKGLVKAINT AVDLIVAHFG TSRDPGVKAK LGNSSVSPNV GHLVLKYLCP BACU017512/1-1505 KKGLVKAINT AVDLIVAHFG TSRDPGVKAK LGNSSVSPNV GHLVLKYLCP 1051 1100 ENSTTRP00000006024/1-1509 AVRAVLEDGL KAFVLDVIIG QRKNTPWSVV EASTQLGPST KVLHGLYNKV ENSP00000393922/1-1516 AVRAVLEDGL KAFVLDVIIG QRKNMPWSVV EASTQLGPST KVLHGLYNKV ENSBTAP00000015156/1-1510 AVQAVLEDGL KSFVLDVIIG QRKNTPWSVV EASTQLGPST KVLHGLYNKV bmy_09976T0/1-1513 AVRAVLEDGL KAFVLDVIIG QRKNTPWSVV EASTQLGPST KVLHGLYNKV BACU017512/1-1505 AVRAVLEDGL KAFVLDVIIG QRKNTPWSVV EASTQLGPST KVLHGLYNKV 1101 1150 ENSTTRP00000006024/1-1509 SQFPELTSHT MRFNAFILGL LNIRSLEFWF NHLYNHEDII QTHYQPWGFL ENSP00000393922/1-1516 SQFPELTSHT MRFNAFILGL LNIRSLEFWF NHLYNHEDII QTHYQPWGFL ENSBTAP00000015156/1-1510 SQFPELTSHT MRFNAFILGL LNIRSLEFWF NHLYNHEDII QTHYQPWGFL bmy_09976T0/1-1513 SQFPELTSHT MRFNAFILGL LNIRSLEFWF NHLYNHEDII QTHYQPWGFL BACU017512/1-1505 SQFPELTSHT MRFNAFILGL LNIRSLEFWF NHLYNHEDII QTHYQPWGFL 1151 1200 ENSTTRP00000006024/1-1509 NAAHTVCPGL LEELLLLLQP LALLPFSLDL LFQHRLLQSG QRQRQHKELL ENSP00000393922/1-1516 SAAHTVCPGL FEELLLLLQP LALLPFSLDL LFQHRLLQSG QQQRQHKELL ENSBTAP00000015156/1-1510 NAAHTVCPGL FEELLLLLQP LALLPFSLDL LFQHRLLQSG QQQRQHKELL bmy_09976T0/1-1513 NAAHTVCPGL LEELLLLLQP LALLPFSLDL LFQHRLLQSG QRQRQHKELL BACU017512/1-1505 SAAHTVCPGL LEELLLLLQP LALLPFSLDL LFQHRLLQSG QRQRQHKELL 1201 1250 ENSTTRP00000006024/1-1509 RVSQDLLLSA HSTLQLARSR SQEGPGDMDG AARGERVKGV GAPEGGEDEE ENSP00000393922/1-1516 RVSQDLLLSA HSTLQLARAR GQEGPGDVDR AAQGERVKGV GASEGGEEEE ENSBTAP00000015156/1-1510 RVSQDLLLSA HSTLQLARSR SQDGPGDVDR AAPGERVKGV GAPEGGEEEE bmy_09976T0/1-1513 RVSQDLLLSA HSTLQLARSR GQEGPGDMDG AARGERVKGV GAPEGGEDEE BACU017512/1-1505 RVSQDLLLSA HSTLQLARSR GQEGPGDMDG AARGERVKGV GAPEGGEDEE 1251 1300 ENSTTRP00000006024/1-1509 EDKET----E AAESSGRGRW ARSGQAGWWY QLMQSSQVYI DGSAEGSRFP ENSP00000393922/1-1516 EEEETEEVAE AAGGSGRARW ARGGQAGWWY QLMQSSQVYI DGSIEGSRFP ENSBTAP00000015156/1-1510 EEEET----E AAGSSGRGRW ARSGQAGWWY QLMQSSQVYI DGSSEGSRFP bmy_09976T0/1-1513 EEKET----E AAGSSGRGRW ARSGQAGWWY QLMQSSQVYI DGSTEGSRFP BACU017512/1-1505 EEKET----E AAGSSGRGRW ARSGQAGWWY QLMQSSQVYI DGSTEGSRFP 1301 1350 ENSTTRP00000006024/1-1509 RGGSNSSSGS SSEKKKGTGG GG----PPPR EGVVEGAEAC PAPEETLGRE ENSP00000393922/1-1516 RG----SSNS SSEKKKGAGG GGPPQAPPPR EGVVEGAEAC PASEEALGRE ENSBTAP00000015156/1-1510 RG---SSTGN SSEKKKGAGG VG----PPPR EGVVEGAEAC PAPEEALGRE bmy_09976T0/1-1513 RGGSNSSSGS SSEKKKGTGG GG----PPPR EGVVEGAEAC PAPEETLGRE BACU017512/1-1505 RGGSNSSSGS SSEKKKGTGG GG----PPPR EGVVEGAEAC PAPEETLGRE 1351 1400 ENSTTRP00000006024/1-1509 RGWPFWMGSP PDSVLAELRR SREREGPTAP PAENEEGALE PSPGVIKWGH ENSP00000393922/1-1516 RGWPFWMGSP PDSVLAELRR SREREGPAAS PAENEEGASE PSPGGIKWGH ENSBTAP00000015156/1-1510 RGWPFWMGSP PDSVLAELRR SREREGSAAP TAENEEGASE PSPGGIKWGH bmy_09976T0/1-1513 RGWPFWMGSP PDSVLAELRR SREREGSTAT PAENEEGALE PSPGVIKWGH BACU017512/1-1505 RGWPFWMGSP PDSVLAELRR SREREGSTAP PAENEEGALE PSPGVIKWGH 1401 1450 ENSTTRP00000006024/1-1509 LFGSRKAQRE ARPTNRLPSD WLSLDKSMFQ LVAQTVGARR EPEPKEGLQE ENSP00000393922/1-1516 LFGSRKAQRE ARPTNRLPSD WLSLDKSMFQ LVAQTVGSRR EPEPKESLQE ENSBTAP00000015156/1-1510 LFGSRKVQRE ARPTNRLPSD WLSLDKSVFQ LVAQTVGARR EPEPKDSLQE bmy_09976T0/1-1513 LFGSRKAQRE ARPTNRLPSD WLSLDKSMFQ LVAQTVGARR EPEPKESLQE BACU017512/1-1505 LFGSRKAQRE ARPTNRLPSD WLSLDKSMLQ LVAQTVGARR EPEPKESLQE 1451 1500 ENSTTRP00000006024/1-1509 PQSPALPSST PCEVKALCHY LATGPGQLSF HKGDILRVLG PAGRDWLRCS ENSP00000393922/1-1516 PHSPALPSSP PCEVQALCHH LATGPGQLSF HKGDILRVLG RAGGDWLRCS ENSBTAP00000015156/1-1510 PPSPGLPSKP PCEVKALCHH LATGPGQLSF RKGDTLRVLG PAGADWLRCS bmy_09976T0/1-1513 PHSPALPSST PCEVKALCHH LATGPGQLSF HKGDVLRVLG PAGGDWLRCS BACU017512/1-1505 PCSPAPPSST PCEVKALCHH LATGPGQLSF HKGDVLRVLG PAGGDWLRCS 1501 1550 ENSTTRP00000006024/1-1509 RGPDTGLVPL AYVTLTPTPS PTPGSSQN ENSP00000393922/1-1516 RGPDSGLVPL AYVTLTPTPS PTPGSSQN ENSBTAP00000015156/1-1510 RGPDTGLVPL AYVTLTPTPS PSPGSSQN bmy_09976T0/1-1513 RGPDTGLVPL AYVTLTPTPS PTPGSSQN BACU017512/1-1505 RGPDTGLVPL AYVTLTPTPS PTPGSSQN