KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:47 2014 Check: 00 .. Name: ENSP00000379980/1-359 Len: 448 Check: 7318 Weight: 1.00 Name: ENSBTAP00000015162/1-357 Len: 448 Check: 788 Weight: 1.00 Name: ENSTTRP00000006045/1-360 Len: 448 Check: 8086 Weight: 1.00 Name: bmy_09973T0/1-448 Len: 448 Check: 2176 Weight: 1.00 Name: BACU017514/1-248 Len: 448 Check: 9864 Weight: 1.00 // 1 50 ENSP00000379980/1-359 MAEAITYADL RFVKAPLKKS ISSRLGQDPG ADDDGEITYE NVQVPAVLGV ENSBTAP00000015162/1-357 MAEAITYADL RFVKAPLKKS NSSRLGHDPE TDEDGELTYE NV--PPGTGG ENSTTRP00000006045/1-360 MAEAITYADL RFVKAPLKKS ISSRLGQDPE ADEDGELTYE NVQVPPGPGG bmy_09973T0/1-448 MAEAITYADL RFVKAPLKKS ISSRLGQDPE ADEEGELTYE NIQVPPGPGG BACU017514/1-248 MAEAITYADL RFVKAPLKKS ISSRLGQDPE ADEDGELTYE NIQVPPGPGG 51 100 ENSP00000379980/1-359 PSSLASSVLG DKAAVKSEQP TASWRAVTSP AVGRILPCRT TCLRYLLLGL ENSBTAP00000015162/1-357 PSSLASSGLR DKAGAQSEQP TAAWSPVTSP AAGRILWCHA ACMRYLVLGL ENSTTRP00000006045/1-360 PSSLASAGLG DKAGIQSEQX XXXXXXXXXX XXXXXXXXQA SYVQYLFLGL bmy_09973T0/1-448 PSSLASAGLG DKAGVQSEQP TAAWSPVTSP AAGRILPCHA SYMQYLLLGL BACU017514/1-248 PSSLASAGLG DKAGVQSEQP TAAWSPVTSP AAGRILPCHA SYMQYLLLGL 101 150 ENSP00000379980/1-359 LLTCLLLGVT AICLGVRYLQ VSQQLQQTNR VLEVTNSSLR QQLRLKITQL ENSBTAP00000015162/1-357 LLTCLLCGVA ATCLGVRYLQ VSRQLQQMNR VLEATNSSLR QQLSQKITQL ENSTTRP00000006045/1-360 LLTCLLLGVA AICLGVHYFQ VSQQLQQMNR VLEATNSTLR QQLRQKITQL bmy_09973T0/1-448 LLACLLLGVA ATCLGVHYFQ VSQQLQQTNR VLEATNSTLR QQLRLKITQL BACU017514/1-248 LLACLLLGVA ATCLGVHYFQ VSQQLQQTNR VLEATNSTLR QQLRLKITQL 151 200 ENSP00000379980/1-359 GQSAEDLQGS RRELAQSQEA LQVEQRAHQA AEGQLQACQA DRQKTKETLQ ENSBTAP00000015162/1-357 GQREEDLQGS RRKLAQSQET LQVEQKAGQA TRQQLQACQS DGEKTKEALR ENSTTRP00000006045/1-360 GQREEDLQGS RTELAQSQER LQVEQKVGQA TKEQLQACQS DGEKTKEALR bmy_09973T0/1-448 GQREEDLQGS RRELAQSQET LQVEQKVGQA TKEQLQACQS DGEKTKEALR BACU017514/1-248 GQREEDLQGS RRELAQSQET LQVEQKVGQA TKEQLQACQS DGEKTKEALR 201 250 ENSP00000379980/1-359 SEEQQRRALE QKLSNMENRL KPFFTCGSAD TCCPSGWIMH QKSCFYISLT ENSBTAP00000015162/1-357 NKETERMNLE QRLNSMQERL QPFFKCSTPG SCCPLGWIQN ERSCFYISVT ENSTTRP00000006045/1-360 NKEIQRMNLE QRLSSVQDTL KPFFTCPSPD SCCPLGWIPN ERRCFYISIT bmy_09973T0/1-448 NKEIQRTNLE QELSSVRDTL KPFFACTSPD SCCPLGWILN ERSCFYISIT BACU017514/1-248 NKEIQRTNLE QELSSVRDTL KPFFTCTSPG IFCGKG---- ---------- 251 300 ENSP00000379980/1-359 SKNWQESQKQ CETLSSKLAT FSEI-YPQSH SYYFL----- ---------- ENSBTAP00000015162/1-357 KRNWMESQSH CKSLSSDLAK ISDSSYPYAI SIRNL----- ---------- ENSTTRP00000006045/1-360 KRNWEDSQRH CKSLSSELAK ISDTSYSYGX XXXXX----- ---------- bmy_09973T0/1-448 KRSWEESQSH CKSLSSELAK ISDISYSYGV EGEWLASLKA EDCYSSLPSI BACU017514/1-248 ---------- ---------- ---------- --EMV----- ---------- 301 350 ENSP00000379980/1-359 ---------- -NSLLPNG-- --G-SGNSYW TGLSSNKDWK LTDDTQRTRT ENSBTAP00000015162/1-357 ---------- -RKVVPQGEY WVA-HRNPFW QPDHTKQSWY PSP------- ENSTTRP00000006045/1-360 ---------- -XXXXXXX-- --X-XXXXXX XXXXXXXXXX XXXXXXXXXY bmy_09973T0/1-448 CEMEAFSNAL SGSVIPTGEQ AQGMQRKCCV PHVHAEVPLY REKRCSAHPG BACU017514/1-248 ---------- -GPAMKDG-- ---------- ---------- ---------- 351 400 ENSP00000379980/1-359 YAQSSKCN-- -----KVHKT WSWWTLESE- SCRSSLPYIC EMTAFRFPD- ENSBTAP00000015162/1-357 -----KCP-- -----TLEIK WANLDSKTDS SCHLPLPSIC EMSAFRSPDR ENSTTRP00000006045/1-360 YSQGQRCT-- -----KVDGE WQAR-LKVE- DCSSSLPSIC ELEAFRYPDA bmy_09973T0/1-448 LAQASMCALS SQGILKAKGG GRRPQAPLLR ACPRQLQAGC GWLGVVPPVA BACU017514/1-248 ---------- ---------- -----LK--- ---------- ---------- 401 450 ENSP00000379980/1-359 ---------- ---------- ---------- ---------- -------- ENSBTAP00000015162/1-357 DHSLH----- ---------- ---------- ---------- -------- ENSTTRP00000006045/1-360 ---------- ---------- ---------- ---------- -------- bmy_09973T0/1-448 EETARLAVQV AVAGHSWCGA GAHGQEAKAE GAEAAARAGQ PLLGLPGG BACU017514/1-248 ---------- ---------- ---------- ---------- --------