KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:54:50 2014 Check: 00 .. Name: ENSP00000367638/1-335 Len: 373 Check: 2593 Weight: 1.00 Name: ENSBTAP00000015167/1-335 Len: 373 Check: 628 Weight: 1.00 Name: ENSTTRP00000011307/1-343 Len: 373 Check: 1089 Weight: 1.00 Name: bmy_09970T0/1-263 Len: 373 Check: 5719 Weight: 1.00 // 1 50 ENSP00000367638/1-335 ---------- ---------- ---------- --------ME LSCPGSRCPV ENSBTAP00000015167/1-335 ---------- ---------- ---------- --------ME SPAPGARCPV ENSTTRP00000011307/1-343 CSVLRAALQG PAPTAPPSEP LGFESPAGCG WNYRPSSPME SPGPSVRCPV bmy_09970T0/1-263 ---------- ---------- ---------- --------ME SPGPSARCPV 51 100 ENSP00000367638/1-335 QEQRARWERK RACTARELLE TERRYQEQLG LVATYFLGIL KAKGTLRPPE ENSBTAP00000015167/1-335 QEQRARWERK RACTARELLE TERRYQEQLG LVATYFVAIL RAKGTLRPPE ENSTTRP00000011307/1-343 QEQRARWERK RACTARELLE TERRYHEQLG LVATYFVGIL RAKGTLRPPE bmy_09970T0/1-263 QEQRARWERK RACTARELLE TERRYQEQLG LVAT------ ---------- 101 150 ENSP00000367638/1-335 RQALFGSWEL IYGASQELLP YLEGGCWGQG LEGFCRHLEL YNQFAANSER ENSBTAP00000015167/1-335 RQALFGPWEL IYGASQELLP YLEGGRWGQG LEGFCNHLEL YTQFAANVER ENSTTRP00000011307/1-343 RQALFGPWEL IYGASQELLP YLEGGRWGQG LEGFCPHLEL YTQFAANAER bmy_09970T0/1-263 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000367638/1-335 SQTTLQEQLK KNKGFRRFVR LQEGRPEFGG LQLQDLLPLP LQRLQQYENL ENSBTAP00000015167/1-335 SRTILQEQLK KNKHFRRFVR LQEGRPEFGG LQLQDLLPLP LQRLQQYENL ENSTTRP00000011307/1-343 SRTTLQEQLK KNKRFRRFVR LQEGRPEFGG IQLQDLLPLP LQRLQQYENL bmy_09970T0/1-263 ------EQLK KNKRFRRFVR LQEGRPEFGG LQLQDLLPLP LQRLQQYENL 201 250 ENSP00000367638/1-335 VVALAENTGP NSPDHQQLTR AARLISETAQ RVHTIGQKQK NDQHLRRVQA ENSBTAP00000015167/1-335 AVALAENTGP NSPEHKQLTR AAQLISETAQ RVHTIGQKQK NEQHLQRIQA ENSTTRP00000011307/1-343 AIALAENTGP NSPDHEQLTR AARRISDTAQ RVHTISQKQK NDQHLQRVQA bmy_09970T0/1-263 AIALAENTGP NSPDHEQLTR AARRISETAQ RVHTISQKQK NDQHLQRVQA 251 300 ENSP00000367638/1-335 LLSGRQAKGL TSGRWFLRQG WLLVVPPHGE PRPRMFFLFT DVLLMAKPRP ENSBTAP00000015167/1-335 LLSGRQAKGL ISGRWFLRQG WLLVVPPRGE PRPRMFFLFS DALLMAKPRP ENSTTRP00000011307/1-343 LLSGRQAKGL ISGRWFLRQG WLLVVPPRGE PRPRMFFLFS DALLMAKPRP bmy_09970T0/1-263 LLSGRQAKGL VSGRWFLRQG WLLVVPPRGE PRPRMFFLFS DALLMAKPRP 301 350 ENSP00000367638/1-335 PLHLLRSGTF ACKALYPMAQ CHLSRVFGHS GGPCGGLLSL SFPHEKLLLM ENSBTAP00000015167/1-335 PLHLLQSGTF ACRALYPMGE CQLHRVFGHS GGPCGGLLSL SFPHEKLLLM ENSTTRP00000011307/1-343 PLHLLQSGTF ACQALYPMAE CQLHRVFGHS GGPCGGLLSV KPP------- bmy_09970T0/1-263 PLHLLQSGTF ACQALYPMAE CQLHRVFGHS GGPCGGLLSL SFPHEKLLLM 351 400 ENSP00000367638/1-335 STDQEELSRW YHSLTWAISS QKN ENSBTAP00000015167/1-335 STDQEELSHW YHSLTLAISS QKN ENSTTRP00000011307/1-343 ---------- ---------- --- bmy_09970T0/1-263 STDQEELSQW HHSLTLASSS QKN