KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:52 2014 Check: 00 .. Name: ENSTTRP00000011309/1-431 Len: 532 Check: 2091 Weight: 1.00 Name: ENSP00000367608/1-459 Len: 532 Check: 4611 Weight: 1.00 Name: BACU017518/1-451 Len: 532 Check: 3102 Weight: 1.00 Name: ENSBTAP00000015174/1-449 Len: 532 Check: 7057 Weight: 1.00 Name: bmy_09969T0/1-516 Len: 532 Check: 85 Weight: 1.00 // 1 50 ENSTTRP00000011309/1-431 MAPLCPSPWL PLWIPAPAPG PAVQLLLLLL LLVPAHPQSL LWMQGAPTTG ENSP00000367608/1-459 MAPLCPSPWL PLLIPAPAPG LTVQLLLSLL LLVPVHPQRL PRMQEDSPLG BACU017518/1-451 MASLCPSPWL PLLIPAPAPG PAVQLLLLLL LLVPAHPQSL LRMQEAPTTG ENSBTAP00000015174/1-449 MAPLCPSPRL PLWIPAPAPG PAVQLLLLLL LLVPAHPQKL LWMQGAPTTG bmy_09969T0/1-516 MASLCPSPWL PLLIPAPAPG PAVQLLLLLF LLVPAHPQSL LRMQEAPTTG 51 100 ENSTTRP00000011309/1-431 GDSSGEDDPL REEDLPS--- ---------E EDIPGEEDPP GKLDPPGMKT ENSP00000367608/1-459 GGSSGEDDPL GEEDLPSEED SPREEDPPGE EDLPGEEDLP GEEDLPEVKP BACU017518/1-451 GDSSGEDDPL GEEDLPS--- ---------E EDIPGEEDPP GELDPPGMKT ENSBTAP00000015174/1-449 GDSSGEDDPL GEEDLPS--- ---------E EDIPEEEDSP EEEDLPGLKT bmy_09969T0/1-516 GDSSGEDDPL GEEDLPSEEG I------PGE EDIPGEEDPP GELDPPGMKT 101 150 ENSTTRP00000011309/1-431 EAGEEDSLKI EDLPTVETPR DTQGPQNNAH RDKKXXXXXX XXXXXXXXXX ENSP00000367608/1-459 KSEEEGSLKL EDLPTVEAPG DPQEPQNNAH RDKEGDDQSH WRYGGDPPWP BACU017518/1-451 EAGEEDSLKL EDLPTVETPR DTQGPQNNAH RDKKGDDHSH WRYGGAPPWP ENSBTAP00000015174/1-449 DPGEENSLKL EDLPTVEAPR DTEGPQNNAH RDEKGDGHSH WRYGGAPPWP bmy_09969T0/1-516 EAGEEDSLKL EDLPTVETPR DTQGPQNNAH RDKK------ ----GAPPWP 151 200 ENSTTRP00000011309/1-431 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000367608/1-459 RVSPACAGRF QSPVDIRPQL AAFCPALRPL ELLGFQLPPL PELRLRNNGH BACU017518/1-451 QVSPACAGRF QSPVDIRPEL TAFCPALRPL ELLGFELPPE PELRLRNNGH ENSBTAP00000015174/1-449 QVSPACAGRF QSPVDIRPEL TAFCPALRPL EFLGFELPPQ PKLRLCNNGH bmy_09969T0/1-516 QVSPACAGRF QSPVDIRPEL TAFCSALRPL ELLGFELPPQ PELRLRNNGH 201 250 ENSTTRP00000011309/1-431 XXQLSLPPGL EMALGPGQEY RALQLHLHWG AAGRPGSEHT VGGHRFPAEI ENSP00000367608/1-459 SVQLTLPPGL EMALGPGREY RALQLHLHWG AAGRPGSEHT VEGHRFPAEI BACU017518/1-451 TVQLSLPPGL EMALGPGQEY RALQLHLHWG AAGRPGSEHT VGGHRFPAEI ENSBTAP00000015174/1-449 TVQLSLPSGL KMALGPGQEY RALQLHLHWG AAGRPGSEHT VDGHRFPAEI bmy_09969T0/1-516 TVQLSLPPGL EMALGPGQEY RALQLHLHWG AAGRPGSEHT VGGHRFPAEI 251 300 ENSTTRP00000011309/1-431 HVVHLSTAFA KADEALGRPG GLAVLAAFLQ EGPEENSAYE QLLSHLGEIA ENSP00000367608/1-459 HVVHLSTAFA RVDEALGRPG GLAVLAAFLE EGPEENSAYE QLLSRLEEIA BACU017518/1-451 HVVHLSTAFA KVDEALGRPG GLAVLAAFLQ EGPEENSAYE QLLSHLGEIA ENSBTAP00000015174/1-449 HVVHLSTAFE EFDEALGRPG GLAVLAAFLQ EGPEENSAYE QLLSRLGEIT bmy_09969T0/1-516 HVVHLSTAFA KVDEALGRPG GLAVLAAFLQ EGPEENSAYE QLLSHLGEIA 301 350 ENSTTRP00000011309/1-431 EEDSETWVPG LDVSALLPSD LSRYFRYEGS LTTPPCAQGV IWTVFNQTVK ENSP00000367608/1-459 EEGSETQVPG LDISALLPSD FSRYFQYEGS LTTPPCAQGV IWTVFNQTVM BACU017518/1-451 EEDSETWVPG LDVSALLPSD LSLYFRYEGS LTTPPCAQGV IWTVFNQTVK ENSBTAP00000015174/1-449 EKDSETWVPG LDVSALLPSD LSRYFRYEGS LTTPPCAQGV IWTVFNQTVK bmy_09969T0/1-516 EEDSETWVPG LDVSALLPSD LSLYFRYEGS LTTPPCAQGV IWTVFNQTVK 351 400 ENSTTRP00000011309/1-431 LSAKQLHALS DSLWGPDDSR LQLNFRATQP LNGRIIEASF PAGVDSSPGT ENSP00000367608/1-459 LSAKQLHTLS DTLWGPGDSR LQLNFRATQP LNGRVIEASF PAGVDSSPRA BACU017518/1-451 LSAKQLHTLS DSLWGPDDSQ LQLNFRATQP LNGRIIEASF PAGVDSSPGT ENSBTAP00000015174/1-449 LSAKQLHTLS DSLWGPDDSR LQLNFRATQP LNGRIIEASF PAGVDGSPRT bmy_09969T0/1-516 LSAKQLHTLS DSLWGPDDSR LQLNFRATQP LNGRIIEASF PAGVDSSPGT 401 450 ENSTTRP00000011309/1-431 VEP------- ---------- ---VHLN-SC ---------- ---------- ENSP00000367608/1-459 AEP------- ---------- ---VQLN-SC ---------- ---------- BACU017518/1-451 VEPGAAF--- ---------- ---CLLM-SC ---------- ---------- ENSBTAP00000015174/1-449 VEP------- ---------- ---VHLN-SC ---------- ---------- bmy_09969T0/1-516 VEPGAALSTD VMPPAPSHRE EKSTYLTPPC VSTPIPLLAS AGFGDAGGSW 451 500 ENSTTRP00000011309/1-431 ---------- ---------- ---------- -----LAALV ---------- ENSP00000367608/1-459 ---------- ---------- ---------- LAAGDILALV FGLLFAVTSV BACU017518/1-451 ---------- ---------- -PLPPATGPS SSPCVLICLS LVITTPGSNV ENSBTAP00000015174/1-449 ---------- ---------- ---------- LAAGDILALV FGLLFAVTSI bmy_09969T0/1-516 RTWGRGGGQV EEALREPTDS SSLPEAVSLL LPPGDILALV FGLLFAVTGI 501 550 ENSTTRP00000011309/1-431 -FLVQMRRQQ R--SGTKGSV RYHPAEVTET VA ENSP00000367608/1-459 AFLVQMRRQH R--RGTKGGV SYRPAEVAET GA BACU017518/1-451 SFFSSVHLNS CLAAGESVPL L--------- -- ENSBTAP00000015174/1-449 AFLVQMRRQQ RHLSETKGSV SYHPAEVTET VA bmy_09969T0/1-516 AFLVQMRRQQ RHPSGTKGSV SYRPAEVTET VA