KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:54 2014 Check: 00 .. Name: ENSP00000367343/1-927 Len: 933 Check: 4969 Weight: 1.00 Name: ENSTTRP00000011313/1-926 Len: 933 Check: 8596 Weight: 1.00 Name: ENSBTAP00000015194/1-926 Len: 933 Check: 7721 Weight: 1.00 Name: bmy_09965T0/1-922 Len: 933 Check: 4992 Weight: 1.00 Name: BACU017521/1-925 Len: 933 Check: 7789 Weight: 1.00 // 1 50 ENSP00000367343/1-927 MGTQDPGNMG TGVPASEQIS CAKEDPQVYC PEETGGTKDV QVTDCKSPED ENSTTRP00000011313/1-926 VGTQNPGNMR TGVPASEETS CAKGDPQAYC PENTGGTEAV QVTDCQNPED ENSBTAP00000015194/1-926 LETQDPGNMG TGVPASEQTS CAKGDPQASC PEN--GTEAV QVTDCPIPED bmy_09965T0/1-922 --------MR TGVPASEQTS CAKGDPQAYC PENTGGTEAV QVTDCQNPED BACU017521/1-925 --------MR TGVPASEQTS CAKGDPQAYC PENTGGTEAV QVTDCQNPED 51 100 ENSP00000367343/1-927 SRPPKETDCC NPEDSGQLMV SYEGKAMGYQ VPPFGWRICL AHEFTEKRKP ENSTTRP00000011313/1-926 SQPQNEQGYS NPQDFGPLMA SYEGKAKGYQ VPPFGWRICL AHEFAEKRKP ENSBTAP00000015194/1-926 SPPQHEQGYS SAEDSGQLMA SYEGKAKGYQ VPPFGWRICL AHEFAEKRKP bmy_09965T0/1-922 SQPQNEQGYS NPQDFGQLMA SYEGKAKGYQ VPPFGWRICL AHEFAEKRKP BACU017521/1-925 SQPQNEQGYS NPQDFGQLMA SYEGKAKGYQ VPPFGWRICL AHEFAEKRKP 101 150 ENSP00000367343/1-927 FQANNVSLSN MIKHIGMGLR YLQWWYRKTH VEKKTPFIDM INSVPLRQIY ENSTTRP00000011313/1-926 FNANNVSLSN LMKHLGMGLX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000015194/1-926 FNANDISLSN LIKHLGMGLR YLQWWYRKTQ VEKKKPFIDL INSVPLRQIY bmy_09965T0/1-922 FNANNVSLSN LMKHLGMGLR YLQWWYRKTQ VEKKTPFIDL INSVPLRQIY BACU017521/1-925 FNANNVSLSN LMKHLGMGLR YLQWWYRKTQ VEKKTPFIDL INSVPLRQIY 151 200 ENSP00000367343/1-927 GCPLGGIGGG TITRGWRGQF CRWQLNPGMY QHRTVIADQF TVCLRREGQT ENSTTRP00000011313/1-926 XCPLGGIGGG TITRGWRGQF CRWQLNPGMY QHQTVIADQF TVCLRRKGQT ENSBTAP00000015194/1-926 GCPLGGIGGG TITRGWRGQF CRWQLNPGMY QHQTVIANQF TVCLRRRGQT bmy_09965T0/1-922 GCPLGGIGGG TITRGWRGQF CRWQLNPGMY QHQTVIADQF TVCLRRKGQT BACU017521/1-925 GCPLGGIGGG TITRGWRGQF CRWQLNPGMY QHQTVIADQF TVCLRRKGQT 201 250 ENSP00000367343/1-927 VYQQVLSLER PSVLRSWNWG LCGYFAFYHA LYPRAWTVYQ LPGQNVTLTC ENSTTRP00000011313/1-926 VYQQVLSVER PSVLQSWNWG LCGYFAFYHA LYPRAWTVYQ LPGQNVTLTC ENSBTAP00000015194/1-926 VYQQVLSVER PSVLCSWNWG LCGYFAFYHA LYPRAWTVYQ LPGQNVTLTC bmy_09965T0/1-922 VYQQVLSVER PSVLHSWNWG LCGYFAFYHA LYPRAWTVYQ LPGQNVTLTC BACU017521/1-925 VYQQVLSVER PSVLHSWNWG LCGYFAFYHA LYPRAWTVYQ LPGQNVTLTC 251 300 ENSP00000367343/1-927 RQITPILPHD YQDSSLPVGV FVWDVENEGD EALDVSIMFS MRNGLGGGDD ENSTTRP00000011313/1-926 RQITPILPHD YQDSSLPVGV FVWDVENEGD EALDVSIMFS MRNGLGGEDD ENSBTAP00000015194/1-926 RQITPILPHD YQDSSLPVGV FVWDVENEGD EALEVSIMFS MRNGLGGEDD bmy_09965T0/1-922 RQITPILPHD YQDSSLPVGV FVWDVENEGD EALDVSIMFS MRNGLGGEDD BACU017521/1-925 RQITPILPHD YQDSSLPVGV FVWDVENEGD EALDVSIMFS MRNGLGGEDD 301 350 ENSP00000367343/1-927 APGGLWNEPF CLERSGETVR GLLLHHPTLP NPYTMAVAAR VTAATTVTHI ENSTTRP00000011313/1-926 APGGLWNEPF CLERDGETVQ GLLLHHPTPP NPYTMAVAAR LTADTMVTHL ENSBTAP00000015194/1-926 APGGLWNEPF CLEHDGETVQ GLLLHHPTPP NPYTMAVAAR LSADTTVTHL bmy_09965T0/1-922 APGGLWNEPF CLERDGETVQ GLLLHHPTPP NPYTMAVAAR LTADTMVTHL BACU017521/1-925 APGGLWNEPF CLERDGETVQ GLLLHHPTPP NPYMMAVAAR LTADTMVTHL 351 400 ENSP00000367343/1-927 TAFDPDSTGQ QVWQDLLQDG QLDSPTGQST PTQKGVGIAG AVCVSSKLRP ENSTTRP00000011313/1-926 TAFDPDSTGQ QVWQDLLQDG QLDSLAGQSL PSQKGVGIAG AVCVMGKLPP ENSBTAP00000015194/1-926 TAFDPDSAGQ QVWQDLLLDG QLDSLAGKSL PSQKGVGIAG AVCVSGKLPP bmy_09965T0/1-922 TAFDPDSAGQ QVWQDLLQDG QLDSLAGQSL PSQKGVGIAG AVCVMGKLPP BACU017521/1-925 TAFDPDSAGQ QVWQDLLHDG QLDSLAGQSL PSQKGVGIAG AVCVMGKLPP 401 450 ENSP00000367343/1-927 RGQCRLEFSL AWDMPRIMFG AKGQVHYRRY TRFFGQDGDA APALSHYALC ENSTTRP00000011313/1-926 RGQCRLEFSL AWDMPRIMFG AKGQVYYRRY TRFFGPDGDA APTLSHYALC ENSBTAP00000015194/1-926 RGRHRLEFSL AWDMPRIMFG AKGQVYYRRY TRFFGPDGDA APALSHYALR bmy_09965T0/1-922 RGQRRLEFSL AWDMPRIMFG AKGQVYYRRY TRFFGPDGDA APTLSHYALC BACU017521/1-925 RGQRRLEFSL AWDMPRIMFG AKGQVYYRRY TRFFGPDGDA APTLSHYALC 451 500 ENSP00000367343/1-927 RYAEWEERIS AWQSPVLDDR SLPAWYKSAL FNELYFLADG GTVWLEVLED ENSTTRP00000011313/1-926 RYADWEERIS AWQSPVFDDR SLPAWYKSAL FNELYFLADG GTVWLEVPED ENSBTAP00000015194/1-926 HYADWEEKIS AWQSPVLEDR SLPAWYKSAL FNELYFLADG GTVWLEVPED bmy_09965T0/1-922 RYADWEERIS AWQSPVLDDR SLPAWYKSAL FNELYFLADG GTVWLEVPED BACU017521/1-925 RYADWEERIS AWQSPVLDDR SLPAWYKSAL FNELYFLADG GTVWLEVPED 501 550 ENSP00000367343/1-927 SLPEELGRNM CHLRPTLRDY GRFGYLEGQE YRMYNTYDVH FYASFALIML ENSTTRP00000011313/1-926 CLREEPVGSM CQLRPLLQEY GRFGYLEGQE YRMYNTYDVH FYASFALVML ENSBTAP00000015194/1-926 SLPEELVGSM GQLRPLLQEY GRFAYLEGQE YRMYNTYDVH FYASFALIML bmy_09965T0/1-922 CLREEPMESM CQLRPLLREY GRFGYLEGQE YRMYNTYDVH FYASFALVML BACU017521/1-925 CLREEPVESM CQLRPLLREY GRFGYLEGQE YRMYNTYDVH FYASFALVML 551 600 ENSP00000367343/1-927 WPKLELSLQY DMALATLRED LTRRRYLMSG VMAPVKRRNV IPHDIGDPDD ENSTTRP00000011313/1-926 WPKLELSLQY DMALATLRED LAQQQYLMSG IIAPVKRRNV VPHDVGDPDD ENSBTAP00000015194/1-926 WPKLELSLQY DMALATLRED LTQRRFLMSG VTAPVKRRNV IPHDVGDPDD bmy_09965T0/1-922 WPKLELSLQY DMALATLRED LAQQRYLMSG IIAPVKRRNV VPHDVGDPDD BACU017521/1-925 WPKLELSLQY DMALATLRED LAQQQYLMSG IIAPVKRRNV VPHDVGDPDD 601 650 ENSP00000367343/1-927 EPWLRVNAYL IHDTADWKDL NLKFVLQVYR DYYLTGDQNF LKDMWPVCLA ENSTTRP00000011313/1-926 EPWLRVNAYV VHDTADWKDL NLKFVLQVYR DYYLTGDHCF LRDMWPVCLA ENSBTAP00000015194/1-926 EPWLRVNAYE IHDTGDWKDL NLKFVLQVYR DYYLTGDQCF LRDMWPVCLA bmy_09965T0/1-922 EPWLRVNAYV VHDTADWKDL NLKFVLQVYR DYYLTGDHCF LRDMWPVCLA BACU017521/1-925 EPWLRVNAYV VHDTADWKDL NLKFVLQVYR DYYLTGDHCF LRDMWPVCLA 651 700 ENSP00000367343/1-927 VMESEMKFDK DHDGLIENGG YADQTYDGWV TTGPSAYCGG LWLAAVAVMV ENSTTRP00000011313/1-926 VMESEMKFDK DQDGLIENGG YADQTYDGWV TTGPSAYCGG LWLAAVAVMV ENSBTAP00000015194/1-926 VMESEMKFDK DHDGLIENGG YADQTYDGWV TTGPSAYCGG LWLAAVAVMV bmy_09965T0/1-922 VMESEMKFDK DQDGLIENGG YADQTYDGWV TTGPSAYCGG LWLAAVAVMV BACU017521/1-925 VMESEMKFDK DQDGLIENGG YADQTYDGWV TTGPSAYCGG LWLAAVAVMV 701 750 ENSP00000367343/1-927 QMAALCGAQD IQDKFSSILS RGQEAYERLL WNGRYYNYDS SSRPQSRSVM ENSTTRP00000011313/1-926 KMAALCGAQE VQDKFSSILS RGQEAYERLL WNGRYYNYDC SSQPQSYSIM ENSBTAP00000015194/1-926 QMAALCGAQE AQNKFSSILS RGQEAYDRLL WNGRYYNYDC SSQPQSCSIM bmy_09965T0/1-922 KMAALCGAQE VQDKFSSILS RGQEAYERLL WNGRYYNYDC SSQPQSYSIM BACU017521/1-925 KMAALCGAQE VQDKFSSILS RGQEAYERLL WNGRYYNYDC SSQPQSHSIM 751 800 ENSP00000367343/1-927 SDQCAGQWFL KACGLGEGDT EVFPTQHVVR ALQTIFELNV QAFAGGAMGA ENSTTRP00000011313/1-926 SDQCAGQWFL RASGLGEGDS EVFPTPHVVR ALQTIFEFNV QGFAGGAMGA ENSBTAP00000015194/1-926 SDQCAGQWFL RASGLGEGDS EVFPTQQVVR ALQTIFEFNV QAFAGGAMGA bmy_09965T0/1-922 SDQCAGQWFL RASGLGEGDS EVFPTPHVVR ALQTIFEFNV KGFAGGAMGA BACU017521/1-925 SDQCAGQWFL RASGLGEGDS EVFPTPHVVR ALQTIFEFNV QGFAGGAMGA 801 850 ENSP00000367343/1-927 VNGMQPHGVP DKSSVQSDEV WVGVVYGLAA TMIQEGLTWE GFQTAEGCYR ENSTTRP00000011313/1-926 VNGMQPHGVP DRSSVQSDEV WVGVVYGLAA TMIQEGLTWE GFRTAE-CYR ENSBTAP00000015194/1-926 VNGMQPCGVP DTSSVQSDEV WVGVVYGLAA TMIQEGLTRE GFRTAEGCYR bmy_09965T0/1-922 VNGMQPHGVP DRSSVQSDEV WVGVVYGLAA TMIQEGLTWE GFRTAEGCYR BACU017521/1-925 VNGMQPHGVP DRSSVQSDEV WVGVVYGLAA TMIQEGLTWE GFRTAEGCYR 851 900 ENSP00000367343/1-927 TVWERLGLAF QTPEAYCQQR VFRSLAYMRP LSIWAMQLAL ---QQQQHKK ENSTTRP00000011313/1-926 TVWERLGLAF QTPEAYXXXX XXXXXXXXXX XXXXXXXXXX ---XXXXXKR ENSBTAP00000015194/1-926 TVWERLGLAF QTPEAYCQRR VFRSLAYMRP LSIWAMQLAL --QQQQQHKK bmy_09965T0/1-922 TVWERLGLAF QTPEAYCQQQ VFRSLAYMRP LSIWAMQLAL ---QQQQHKK BACU017521/1-925 TVWERLGLAF QTPEAYCQQQ VFRSLAYMRP LSIWAMQLAL QQQQQQQHKK 901 950 ENSP00000367343/1-927 ASWPKVKQGT GLRTGPMFGP KEAMANLSPE --- ENSTTRP00000011313/1-926 PVEPIVKHVT GLSTRFTR-P KEAVANPSPE C-- ENSBTAP00000015194/1-926 ASGPISKRGT GLCTRPKRGP KEAMANPSPE --- bmy_09965T0/1-922 APGPIAKQDT GLSTRPKLGP KEAVANPSPE CAS BACU017521/1-925 APGPIAKQDT GLSTRPKLGP KEAVANPSPE CAS