KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:54:54 2014 Check: 00 ..
Name: ENSP00000367343/1-927 Len: 933 Check: 4969 Weight: 1.00
Name: ENSTTRP00000011313/1-926 Len: 933 Check: 8596 Weight: 1.00
Name: ENSBTAP00000015194/1-926 Len: 933 Check: 7721 Weight: 1.00
Name: bmy_09965T0/1-922 Len: 933 Check: 4992 Weight: 1.00
Name: BACU017521/1-925 Len: 933 Check: 7789 Weight: 1.00
//
1 50
ENSP00000367343/1-927 MGTQDPGNMG TGVPASEQIS CAKEDPQVYC PEETGGTKDV QVTDCKSPED
ENSTTRP00000011313/1-926 VGTQNPGNMR TGVPASEETS CAKGDPQAYC PENTGGTEAV QVTDCQNPED
ENSBTAP00000015194/1-926 LETQDPGNMG TGVPASEQTS CAKGDPQASC PEN--GTEAV QVTDCPIPED
bmy_09965T0/1-922 --------MR TGVPASEQTS CAKGDPQAYC PENTGGTEAV QVTDCQNPED
BACU017521/1-925 --------MR TGVPASEQTS CAKGDPQAYC PENTGGTEAV QVTDCQNPED
51 100
ENSP00000367343/1-927 SRPPKETDCC NPEDSGQLMV SYEGKAMGYQ VPPFGWRICL AHEFTEKRKP
ENSTTRP00000011313/1-926 SQPQNEQGYS NPQDFGPLMA SYEGKAKGYQ VPPFGWRICL AHEFAEKRKP
ENSBTAP00000015194/1-926 SPPQHEQGYS SAEDSGQLMA SYEGKAKGYQ VPPFGWRICL AHEFAEKRKP
bmy_09965T0/1-922 SQPQNEQGYS NPQDFGQLMA SYEGKAKGYQ VPPFGWRICL AHEFAEKRKP
BACU017521/1-925 SQPQNEQGYS NPQDFGQLMA SYEGKAKGYQ VPPFGWRICL AHEFAEKRKP
101 150
ENSP00000367343/1-927 FQANNVSLSN MIKHIGMGLR YLQWWYRKTH VEKKTPFIDM INSVPLRQIY
ENSTTRP00000011313/1-926 FNANNVSLSN LMKHLGMGLX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSBTAP00000015194/1-926 FNANDISLSN LIKHLGMGLR YLQWWYRKTQ VEKKKPFIDL INSVPLRQIY
bmy_09965T0/1-922 FNANNVSLSN LMKHLGMGLR YLQWWYRKTQ VEKKTPFIDL INSVPLRQIY
BACU017521/1-925 FNANNVSLSN LMKHLGMGLR YLQWWYRKTQ VEKKTPFIDL INSVPLRQIY
151 200
ENSP00000367343/1-927 GCPLGGIGGG TITRGWRGQF CRWQLNPGMY QHRTVIADQF TVCLRREGQT
ENSTTRP00000011313/1-926 XCPLGGIGGG TITRGWRGQF CRWQLNPGMY QHQTVIADQF TVCLRRKGQT
ENSBTAP00000015194/1-926 GCPLGGIGGG TITRGWRGQF CRWQLNPGMY QHQTVIANQF TVCLRRRGQT
bmy_09965T0/1-922 GCPLGGIGGG TITRGWRGQF CRWQLNPGMY QHQTVIADQF TVCLRRKGQT
BACU017521/1-925 GCPLGGIGGG TITRGWRGQF CRWQLNPGMY QHQTVIADQF TVCLRRKGQT
201 250
ENSP00000367343/1-927 VYQQVLSLER PSVLRSWNWG LCGYFAFYHA LYPRAWTVYQ LPGQNVTLTC
ENSTTRP00000011313/1-926 VYQQVLSVER PSVLQSWNWG LCGYFAFYHA LYPRAWTVYQ LPGQNVTLTC
ENSBTAP00000015194/1-926 VYQQVLSVER PSVLCSWNWG LCGYFAFYHA LYPRAWTVYQ LPGQNVTLTC
bmy_09965T0/1-922 VYQQVLSVER PSVLHSWNWG LCGYFAFYHA LYPRAWTVYQ LPGQNVTLTC
BACU017521/1-925 VYQQVLSVER PSVLHSWNWG LCGYFAFYHA LYPRAWTVYQ LPGQNVTLTC
251 300
ENSP00000367343/1-927 RQITPILPHD YQDSSLPVGV FVWDVENEGD EALDVSIMFS MRNGLGGGDD
ENSTTRP00000011313/1-926 RQITPILPHD YQDSSLPVGV FVWDVENEGD EALDVSIMFS MRNGLGGEDD
ENSBTAP00000015194/1-926 RQITPILPHD YQDSSLPVGV FVWDVENEGD EALEVSIMFS MRNGLGGEDD
bmy_09965T0/1-922 RQITPILPHD YQDSSLPVGV FVWDVENEGD EALDVSIMFS MRNGLGGEDD
BACU017521/1-925 RQITPILPHD YQDSSLPVGV FVWDVENEGD EALDVSIMFS MRNGLGGEDD
301 350
ENSP00000367343/1-927 APGGLWNEPF CLERSGETVR GLLLHHPTLP NPYTMAVAAR VTAATTVTHI
ENSTTRP00000011313/1-926 APGGLWNEPF CLERDGETVQ GLLLHHPTPP NPYTMAVAAR LTADTMVTHL
ENSBTAP00000015194/1-926 APGGLWNEPF CLEHDGETVQ GLLLHHPTPP NPYTMAVAAR LSADTTVTHL
bmy_09965T0/1-922 APGGLWNEPF CLERDGETVQ GLLLHHPTPP NPYTMAVAAR LTADTMVTHL
BACU017521/1-925 APGGLWNEPF CLERDGETVQ GLLLHHPTPP NPYMMAVAAR LTADTMVTHL
351 400
ENSP00000367343/1-927 TAFDPDSTGQ QVWQDLLQDG QLDSPTGQST PTQKGVGIAG AVCVSSKLRP
ENSTTRP00000011313/1-926 TAFDPDSTGQ QVWQDLLQDG QLDSLAGQSL PSQKGVGIAG AVCVMGKLPP
ENSBTAP00000015194/1-926 TAFDPDSAGQ QVWQDLLLDG QLDSLAGKSL PSQKGVGIAG AVCVSGKLPP
bmy_09965T0/1-922 TAFDPDSAGQ QVWQDLLQDG QLDSLAGQSL PSQKGVGIAG AVCVMGKLPP
BACU017521/1-925 TAFDPDSAGQ QVWQDLLHDG QLDSLAGQSL PSQKGVGIAG AVCVMGKLPP
401 450
ENSP00000367343/1-927 RGQCRLEFSL AWDMPRIMFG AKGQVHYRRY TRFFGQDGDA APALSHYALC
ENSTTRP00000011313/1-926 RGQCRLEFSL AWDMPRIMFG AKGQVYYRRY TRFFGPDGDA APTLSHYALC
ENSBTAP00000015194/1-926 RGRHRLEFSL AWDMPRIMFG AKGQVYYRRY TRFFGPDGDA APALSHYALR
bmy_09965T0/1-922 RGQRRLEFSL AWDMPRIMFG AKGQVYYRRY TRFFGPDGDA APTLSHYALC
BACU017521/1-925 RGQRRLEFSL AWDMPRIMFG AKGQVYYRRY TRFFGPDGDA APTLSHYALC
451 500
ENSP00000367343/1-927 RYAEWEERIS AWQSPVLDDR SLPAWYKSAL FNELYFLADG GTVWLEVLED
ENSTTRP00000011313/1-926 RYADWEERIS AWQSPVFDDR SLPAWYKSAL FNELYFLADG GTVWLEVPED
ENSBTAP00000015194/1-926 HYADWEEKIS AWQSPVLEDR SLPAWYKSAL FNELYFLADG GTVWLEVPED
bmy_09965T0/1-922 RYADWEERIS AWQSPVLDDR SLPAWYKSAL FNELYFLADG GTVWLEVPED
BACU017521/1-925 RYADWEERIS AWQSPVLDDR SLPAWYKSAL FNELYFLADG GTVWLEVPED
501 550
ENSP00000367343/1-927 SLPEELGRNM CHLRPTLRDY GRFGYLEGQE YRMYNTYDVH FYASFALIML
ENSTTRP00000011313/1-926 CLREEPVGSM CQLRPLLQEY GRFGYLEGQE YRMYNTYDVH FYASFALVML
ENSBTAP00000015194/1-926 SLPEELVGSM GQLRPLLQEY GRFAYLEGQE YRMYNTYDVH FYASFALIML
bmy_09965T0/1-922 CLREEPMESM CQLRPLLREY GRFGYLEGQE YRMYNTYDVH FYASFALVML
BACU017521/1-925 CLREEPVESM CQLRPLLREY GRFGYLEGQE YRMYNTYDVH FYASFALVML
551 600
ENSP00000367343/1-927 WPKLELSLQY DMALATLRED LTRRRYLMSG VMAPVKRRNV IPHDIGDPDD
ENSTTRP00000011313/1-926 WPKLELSLQY DMALATLRED LAQQQYLMSG IIAPVKRRNV VPHDVGDPDD
ENSBTAP00000015194/1-926 WPKLELSLQY DMALATLRED LTQRRFLMSG VTAPVKRRNV IPHDVGDPDD
bmy_09965T0/1-922 WPKLELSLQY DMALATLRED LAQQRYLMSG IIAPVKRRNV VPHDVGDPDD
BACU017521/1-925 WPKLELSLQY DMALATLRED LAQQQYLMSG IIAPVKRRNV VPHDVGDPDD
601 650
ENSP00000367343/1-927 EPWLRVNAYL IHDTADWKDL NLKFVLQVYR DYYLTGDQNF LKDMWPVCLA
ENSTTRP00000011313/1-926 EPWLRVNAYV VHDTADWKDL NLKFVLQVYR DYYLTGDHCF LRDMWPVCLA
ENSBTAP00000015194/1-926 EPWLRVNAYE IHDTGDWKDL NLKFVLQVYR DYYLTGDQCF LRDMWPVCLA
bmy_09965T0/1-922 EPWLRVNAYV VHDTADWKDL NLKFVLQVYR DYYLTGDHCF LRDMWPVCLA
BACU017521/1-925 EPWLRVNAYV VHDTADWKDL NLKFVLQVYR DYYLTGDHCF LRDMWPVCLA
651 700
ENSP00000367343/1-927 VMESEMKFDK DHDGLIENGG YADQTYDGWV TTGPSAYCGG LWLAAVAVMV
ENSTTRP00000011313/1-926 VMESEMKFDK DQDGLIENGG YADQTYDGWV TTGPSAYCGG LWLAAVAVMV
ENSBTAP00000015194/1-926 VMESEMKFDK DHDGLIENGG YADQTYDGWV TTGPSAYCGG LWLAAVAVMV
bmy_09965T0/1-922 VMESEMKFDK DQDGLIENGG YADQTYDGWV TTGPSAYCGG LWLAAVAVMV
BACU017521/1-925 VMESEMKFDK DQDGLIENGG YADQTYDGWV TTGPSAYCGG LWLAAVAVMV
701 750
ENSP00000367343/1-927 QMAALCGAQD IQDKFSSILS RGQEAYERLL WNGRYYNYDS SSRPQSRSVM
ENSTTRP00000011313/1-926 KMAALCGAQE VQDKFSSILS RGQEAYERLL WNGRYYNYDC SSQPQSYSIM
ENSBTAP00000015194/1-926 QMAALCGAQE AQNKFSSILS RGQEAYDRLL WNGRYYNYDC SSQPQSCSIM
bmy_09965T0/1-922 KMAALCGAQE VQDKFSSILS RGQEAYERLL WNGRYYNYDC SSQPQSYSIM
BACU017521/1-925 KMAALCGAQE VQDKFSSILS RGQEAYERLL WNGRYYNYDC SSQPQSHSIM
751 800
ENSP00000367343/1-927 SDQCAGQWFL KACGLGEGDT EVFPTQHVVR ALQTIFELNV QAFAGGAMGA
ENSTTRP00000011313/1-926 SDQCAGQWFL RASGLGEGDS EVFPTPHVVR ALQTIFEFNV QGFAGGAMGA
ENSBTAP00000015194/1-926 SDQCAGQWFL RASGLGEGDS EVFPTQQVVR ALQTIFEFNV QAFAGGAMGA
bmy_09965T0/1-922 SDQCAGQWFL RASGLGEGDS EVFPTPHVVR ALQTIFEFNV KGFAGGAMGA
BACU017521/1-925 SDQCAGQWFL RASGLGEGDS EVFPTPHVVR ALQTIFEFNV QGFAGGAMGA
801 850
ENSP00000367343/1-927 VNGMQPHGVP DKSSVQSDEV WVGVVYGLAA TMIQEGLTWE GFQTAEGCYR
ENSTTRP00000011313/1-926 VNGMQPHGVP DRSSVQSDEV WVGVVYGLAA TMIQEGLTWE GFRTAE-CYR
ENSBTAP00000015194/1-926 VNGMQPCGVP DTSSVQSDEV WVGVVYGLAA TMIQEGLTRE GFRTAEGCYR
bmy_09965T0/1-922 VNGMQPHGVP DRSSVQSDEV WVGVVYGLAA TMIQEGLTWE GFRTAEGCYR
BACU017521/1-925 VNGMQPHGVP DRSSVQSDEV WVGVVYGLAA TMIQEGLTWE GFRTAEGCYR
851 900
ENSP00000367343/1-927 TVWERLGLAF QTPEAYCQQR VFRSLAYMRP LSIWAMQLAL ---QQQQHKK
ENSTTRP00000011313/1-926 TVWERLGLAF QTPEAYXXXX XXXXXXXXXX XXXXXXXXXX ---XXXXXKR
ENSBTAP00000015194/1-926 TVWERLGLAF QTPEAYCQRR VFRSLAYMRP LSIWAMQLAL --QQQQQHKK
bmy_09965T0/1-922 TVWERLGLAF QTPEAYCQQQ VFRSLAYMRP LSIWAMQLAL ---QQQQHKK
BACU017521/1-925 TVWERLGLAF QTPEAYCQQQ VFRSLAYMRP LSIWAMQLAL QQQQQQQHKK
901 950
ENSP00000367343/1-927 ASWPKVKQGT GLRTGPMFGP KEAMANLSPE ---
ENSTTRP00000011313/1-926 PVEPIVKHVT GLSTRFTR-P KEAVANPSPE C--
ENSBTAP00000015194/1-926 ASGPISKRGT GLCTRPKRGP KEAMANPSPE ---
bmy_09965T0/1-922 APGPIAKQDT GLSTRPKLGP KEAVANPSPE CAS
BACU017521/1-925 APGPIAKQDT GLSTRPKLGP KEAVANPSPE CAS