KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:57 2014 Check: 00 .. Name: ENSP00000270162/1-783 Len: 1142 Check: 7804 Weight: 1.00 Name: ENSBTAP00000015200/1-773 Len: 1142 Check: 5062 Weight: 1.00 Name: ENSTTRP00000001941/1-718 Len: 1142 Check: 4590 Weight: 1.00 Name: bmy_21683T0/1-794 Len: 1142 Check: 405 Weight: 1.00 Name: BACU004379/1-978 Len: 1142 Check: 9144 Weight: 1.00 // 1 50 ENSP00000270162/1-783 MVIMSEFSAD PAGQGQGQQK PLRVGFYDIE RTLGKGNFAV VKLARHRVTK ENSBTAP00000015200/1-773 MVIMSELSAA PAGSGQGQQK PLRVGFYDIE RTLGKGNFAV VKLARHRVTK ENSTTRP00000001941/1-718 ---------- ---------- ---------- ---------- ---------- bmy_21683T0/1-794 MVIMSELSAA PAGSGQGQQK PLRVGFYDIE RTLGKGNFAV VKLARHRVTK BACU004379/1-978 MVIMSELSAA PAGSGQGQQK PLRVGFYDIE RTLGKGNFAV VKLARHRVTK 51 100 ENSP00000270162/1-783 TQVAIKIIDK TRLDSSNLEK IYREVQLMKL LNHPHIIKLY QVMETKDMLY ENSBTAP00000015200/1-773 TQVAIKIIDK ARLDSSNLEK IYREVQIMKL LNHPHIIKLY QVMETKDMLY ENSTTRP00000001941/1-718 --VAIKIIDK TRLDSSNLEK IYREVQIMKL LSHPHIIKLY QVMETKDMLY bmy_21683T0/1-794 TQVAIKIIDK TRLDSSNLEK IYREVQIMKL LNHPHIIKLY QVMETKDMLY BACU004379/1-978 TQVAIKIIDK TRLDSSNLEK IYREVQIMKL LNHPHIIKLY QVMETKDMLY 101 150 ENSP00000270162/1-783 IVTEFAKNGE MFDYLTSNGH LSENEARKKF WQILSAVEYC HDHHIVHRDL ENSBTAP00000015200/1-773 IVTEFAKNGE MFDYLTSNGH LSESEARKKF WQILSAVEYC HSHNIVHRDL ENSTTRP00000001941/1-718 IVTEFAKNGE MFDYLTSTGH LSESEARKKF WQILSAVEYC HSHNIVHRDL bmy_21683T0/1-794 IVTEFAKNGE MFDYLTSTGH LSESEARKKF WQILSAVEYC HSHNIVHRDL BACU004379/1-978 IVTEFAKNGE MFDYLTSTGH LSESEARKKF WQILSAVEYC HSHNIVHRDL 151 200 ENSP00000270162/1-783 KTENLLLDGN MDIKLADFGF GNFYKSGEPL STWCGSPPYA APEVFEGKEY ENSBTAP00000015200/1-773 KTENLLLDDN MDIKLADFGF GNFYNPGEPL STWCGSPPYA APEVFEGKEY ENSTTRP00000001941/1-718 KTENLLLDGN MDIKLADFGF GNFYKPGEPL STWCGSPPYA APEVFEGKEY bmy_21683T0/1-794 KTENLLLDGN MDIKLADFGF GNFYKPGEPL STWCGSPPYA APEVFEGKEY BACU004379/1-978 KTENLLLDGN MDIKLADFGF GNFYKPGEPL STWCGSPPYA APEVFEGKEY 201 250 ENSP00000270162/1-783 EGPQLDIWSL GVVLYVLVCG SLPFDGPNLP TLRQRVLEGR FRIPFFMSQD ENSBTAP00000015200/1-773 EGPQLDIWSL GVVLYVLVCG SLPFDGPNLP ALRQRVLEGR FRIPFFMSRD ENSTTRP00000001941/1-718 EGPQLDIWSL GVVLYVLVCG SLPFDGPSLP ALRQRVLEGR FRIPFFMSRD bmy_21683T0/1-794 EGPQLDIWSL GVVLYVLVCG SLPFDGPSLP ALRQRVLEGR FRIPFFMSRD BACU004379/1-978 EGPQLDIWSL GVVLYVLVCG SLPFDGPSLP ALRQRVLEGR FRIPFFMSRD 251 300 ENSP00000270162/1-783 CESLIRRMLV VDPARRITIA QIRQHRWMRA EPCLPGPACP AFSAHSYTSN ENSBTAP00000015200/1-773 CETLIRRMLV VEPAKRITIA QIRQHRWMQA EPALVLPACP GFSLLGYTSS ENSTTRP00000001941/1-718 CETLVRRMLA VDPTKRITIS QIWEHRWMRA DPALRQPTCP VFSLLGYASS bmy_21683T0/1-794 CETLIRRMLA VDPTKRITIS QIWQHRWMQA DPALRQPTCP VFSLLGYASS BACU004379/1-978 CETLIRRMLA VDPTKRITIS QIWQHRWMQA DPALRQPTCP VFSLLGYASS 301 350 ENSP00000270162/1-783 LGDYDEQALG IMQTLGVDRQ RTVESLQNSS YNHFAAIYYL LLERLKEYRN ENSBTAP00000015200/1-773 VGDYDEQALG IMQMLGVDRK KTVESLQKRS YNHFAAIYYL LVERLKEYRL ENSTTRP00000001941/1-718 LGSYDEQALG IMQTLGVDRQ RTVESLQNSS YNHFAAIYYL LLERLKELRL bmy_21683T0/1-794 LGSYDEQALG IMQTLGVDRQ RTVESLQNSS YNHFAAIYYL LLERLKELRL BACU004379/1-978 LGSYDEQALG IMQTLGVDRQ RTVESLQNSS YNHFAAIYYL LLERLKELRL 351 400 ENSP00000270162/1-783 AQ-CARPGPA RQPRPRSSDL SGLEVPQEGL STDPFRPALL CPQPQTLVQS ENSBTAP00000015200/1-773 TQ-PARPGPA RQQRPRSTDL SGFEVPQEGL PGDALRSALL CTQPQTLGQS ENSTTRP00000001941/1-718 AQ-RARPGHA WQQRPRSSDL SGFEVPQEGP PGDAFRSALL CAQPQTLGQS bmy_21683T0/1-794 AQPPARPGHA WQQRPRSSDL SGFEVPQEGP PGDAFRSALL CAQPQALGQS BACU004379/1-978 AQPPARPGHA WQQRPRSSDL SAFEVPQEGP PGDAFRSALL CAQPQALGQS 401 450 ENSP00000270162/1-783 VLQAEMDCEL QSSLQWPLFF PVDASCSGVF RPRPVSPSSL LDTAISEEAR ENSBTAP00000015200/1-773 VLQAEMDYDL HSSLQ-PLMF PVDTSFGGVC RHRSISPSSL LDTAISEEAR ENSTTRP00000001941/1-718 VLQAELDCDL HGSLQCPSLF PVDTGCHGVC QWRSVSPSSL LDTAISEEAR bmy_21683T0/1-794 VLQAEIDCDL HSSLQ-PLLF PVDTGCRGVC RRRSVSPSSL LDTAIREEAR BACU004379/1-978 VLQAEIDCDL HSSLQ-PLLF PVDTGCRGVC RRRSVSPSSL LDTAIREEAR 451 500 ENSP00000270162/1-783 QGPGLEEEQD TQESLPSSTG RRHTLAEVST RLSPLTAPC- ---------- ENSBTAP00000015200/1-773 PGPGLDEEQE VQEPLPSSTG RRHTLAEVST CFSPGAPPC- ---------- ENSTTRP00000001941/1-718 RGPGLDEEQV ARGPPPGKAG RRHTL----X XXSPGI-PC- ---------- bmy_21683T0/1-794 RGPGLDEEQE TGELPPGSTG RRHTLAEVST CFSPRIPPCK RPRGSGPRPA BACU004379/1-978 RGPGLDEEQE TREPPPGSTG RRHTLAEVST CFSPRIPPC- ---------- 501 550 ENSP00000270162/1-783 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015200/1-773 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001941/1-718 ---------- ---------- ---------- ---------- ---------- bmy_21683T0/1-794 ASSGLPFLNR LRPREPYLDL AGGPRVAGTA WGLAALGGQQ GRSSAQAPLS BACU004379/1-978 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000270162/1-783 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015200/1-773 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001941/1-718 ---------- ---------- ---------- ---------- ---------- bmy_21683T0/1-794 PGSKRHLLAP RAQPRGAGRR GSLPPELRLG VGRVQLSAPS VGHGPSEGRG BACU004379/1-978 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000270162/1-783 ---------- ---------- ---------- -------IVV SPSTTASPAE ENSBTAP00000015200/1-773 ---------- ---------- ---------- -------IVV SPS-VASPCE ENSTTRP00000001941/1-718 ---------- ---------- ---------- -------IVV SPS-AASPSE bmy_21683T0/1-794 DTAAGAKLRS QSAWTCCEGC RASPGASGLG STYCSAGIVV SPS-AASPSE BACU004379/1-978 ---------- ---------- ---------- -------IVV SPS-AASPSE 651 700 ENSP00000270162/1-783 GTSSDSCLTF SASKSPAGLS GTPATQGLLG ACSPVRLASP FLGSQSATPV ENSBTAP00000015200/1-773 GTSSDSCLT- SAGDGLAGLS GHLAAQGLVG ACSPLRLASP LLGTQSATPM ENSTTRP00000001941/1-718 GTSSDSCLT- SAGDSLAGLS GHLVAQGLLS ACSPLRLASP LLGTQSATPV bmy_21683T0/1-794 GTSSDSCLT- SAGDGLAGLS GHLVAQGLLS ACSPLRLASP LLGTQSATPV BACU004379/1-978 GTSSDSCLT- SAGDGLAGLS GHLVAQGLLS ACSPLRLASP LLGTRSATPV 701 750 ENSP00000270162/1-783 LQAQGGLGGA VLLPVSFQEG RRASDTSLTQ GLKAFRQQLR KTTRTKGFLG ENSBTAP00000015200/1-773 LQAQGALRGA ALLPVSFQEG RRASDTSLTQ GDFLFHAHFH LLRETRVYPP ENSTTRP00000001941/1-718 LQAQGALGGA ALLPVSFQEG RRASDTSLTQ GLKAFRQQLR KNARTKGFLG bmy_21683T0/1-794 LQAQGALGGA ALLPVSFQEG RRASDTSLTQ GDFPFRAH-- ---------- BACU004379/1-978 LQAQGALGGA APLPVSFQEG RRASDTSLTQ GLKAFRQQLR KNARTKGFLG 751 800 ENSP00000270162/1-783 LNKIKGLARQ VCQA-PASRA SRGGLSPFHA --PAQSPGLH --GGAAGSR- ENSBTAP00000015200/1-773 PPGLSQCPLQ AC-------- --GMLRPPVL LTPAFHRIWP VAGGAASHQL ENSTTRP00000001941/1-718 LNKIKGLARQ VCQP-SSSRT SRGGLSTFQL --PAQSPGLH --GGGAGGR- bmy_21683T0/1-794 ---------- ---------- -------FCL --PQETRAHP --GG------ BACU004379/1-978 LNKIKGLARQ VCQPSSSSRT SRGGLSAFQL --PAQSPGLL --GGGAGGR- 801 850 ENSP00000270162/1-783 EGWSLLEEVL EQQRLLQLQH HPAAAPGCSQ APQPAPAPFV IAPCDGPGAA ENSBTAP00000015200/1-773 ASTDLLPLSL RPARLLQLQH HTTAPASCQ- -----PAPKV LAPCDG---- ENSTTRP00000001941/1-718 EGRSLLEEVL HQQRLLQLQH HPAAPPGCQP AAQPPPAPLV LAPCDG---- bmy_21683T0/1-794 ---------- ---------H H--------- ---------- ---------- BACU004379/1-978 EGRSLLEEVL HQQRLLQLQH HPAAPPGCQP AAQHPPAPLV LAPCDG---- 851 900 ENSP00000270162/1-783 PLPSTLLTSG L--------- PLLPPPLL-- ---------- ---------- ENSBTAP00000015200/1-773 ----ALHMSG LQKDLGLGPS PLLPPHLL-- ---------- ---------- ENSTTRP00000001941/1-718 ----ALLVSG L--------- LLLPPPLL-- ---------- ---------- bmy_21683T0/1-794 -----FVLNG ---------- -RWQPPLL-- ---------- ---------- BACU004379/1-978 ----TLLVSG LQKELGLGPG PLLPPPLLXX XXXXXXXXXX XXXXXXXXXX 901 950 ENSP00000270162/1-783 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015200/1-773 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001941/1-718 ---------- ---------- ---------- ---------- ---------- bmy_21683T0/1-794 ---------- ---------- ---------- ---------- ---------- BACU004379/1-978 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 951 1000 ENSP00000270162/1-783 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015200/1-773 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001941/1-718 ---------- ---------- ---------- ---------- ---------- bmy_21683T0/1-794 ---------- ---------- ---------- ---------- ---------- BACU004379/1-978 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 1001 1050 ENSP00000270162/1-783 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015200/1-773 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001941/1-718 ---------- ---------- ---------- ---------- ---------- bmy_21683T0/1-794 ---------- ---------- ---------- ---------- ---------- BACU004379/1-978 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 1051 1100 ENSP00000270162/1-783 ------QTGA SPVASAAQLL DTHLHIG--T GPTALPAVP- -----PPRLA ENSBTAP00000015200/1-773 ------QAGV SPVASAAQLL DAHLRISGST APSPAAAAP- -----QPRFA ENSTTRP00000001941/1-718 ------QAGG SHVASAAQLL DAHLRISSST APGPAAVAP- -----QPCFA bmy_21683T0/1-794 ---------- ---------- ---------A GPGGAAVLPG QAEAAARILD BACU004379/1-978 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXGGRRLPPG NRGVSRASPS 1101 1150 ENSP00000270162/1-783 RLAPGCEPLG L------LQG DCEMEDLMPC SLGTFVLVQ- -- ENSBTAP00000015200/1-773 MLPVSLEPTG L------PHG DCEMEDLTSG KVQEFLFYQ- -- ENSTTRP00000001941/1-718 TLSPSLEPAG L------PQG DCEMEDLTSG PPGTFVLVQ- -- bmy_21683T0/1-794 ALASRTSSHG L--------- ---------- ---------- -- BACU004379/1-978 RVCACACVSG FFLVHNSPLP ETLRLHLKTV NFLLYVSVLE KL