KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:57 2014 Check: 00 .. Name: ENSP00000340982/1-501 Len: 626 Check: 1945 Weight: 1.00 Name: ENSBTAP00000015206/1-499 Len: 626 Check: 1681 Weight: 1.00 Name: bmy_09963T0/1-529 Len: 626 Check: 8740 Weight: 1.00 Name: BACU019880/1-493 Len: 626 Check: 3646 Weight: 1.00 Name: ENSTTRP00000011317/1-473 Len: 626 Check: 1708 Weight: 1.00 // 1 50 ENSP00000340982/1-501 ---------- -----METNE STEGSR---- ---------- ---------- ENSBTAP00000015206/1-499 --------PG SWRRKMETSE STDRSQ---- ---------- ---------- bmy_09963T0/1-529 IASFLPWVCL THLQVRGAAA VTDGNEVAKA QQAAPGGAAP TIFSRILDRS BACU019880/1-493 ---------- -----METTE STEGSQ---- ---------- ---------- ENSTTRP00000011317/1-473 ---------- -----METTE STEGSQ---- ---------- ---------- 51 100 ENSP00000340982/1-501 -------SRS RS-------- ---------- ---------- ---------- ENSBTAP00000015206/1-499 ---------S RC-------- ---------- ---------- ---------- bmy_09963T0/1-529 LPADILYEDQ QCLVFRDVAP QAPVHFLVIP KKPIPRISQA EEEDQQLLGH BACU019880/1-493 ---------S RS-------- ---------- ---------- ---------- ENSTTRP00000011317/1-473 ---------S RC-------- ---------- ---------- ---------- 101 150 ENSP00000340982/1-501 ---------- ---------L DIQPSSEGLG PTSEPFPSSD DSPRSALAAA ENSBTAP00000015206/1-499 ---------- ---------L DLQPSSDGLG SSSDPFSSWD GRHRSALVAA bmy_09963T0/1-529 LLLVAKKTAK AEGLGDGYRL DVQPSSKGLG SISDPFPSWD GRHRSDLEAA BACU019880/1-493 ---------- ---------L DVQPSSEGLG SISDPFPYWD GRHRSALEAA ENSTTRP00000011317/1-473 ---------- ---------L DVQPSCEGLG SISDPFPSWD GRHRSALEAA 151 200 ENSP00000340982/1-501 TAAAAAAASA AAATAAFTTA KAAALSTKTP APCSE---FM EPSSDPSLLG ENSBTAP00000015206/1-499 TAAASAAATA A------STA RAAALWTKSP APYSHGNLLT EPSSD-SLT- bmy_09963T0/1-529 TAEASAAAAA AAAA---STT KAAALSTKTP APYSERSLLM EPSSE-SLLG BACU019880/1-493 TAETSAAAAA TAAA---STT KAAALSTKTP APYSERSLLM EPSSE-SLLG ENSTTRP00000011317/1-473 TAEASAAAAA TAAA---STI KAAALSTKTP APCSERSLLM EPSSE-SLLG 201 250 ENSP00000340982/1-501 EPCAGPGFTH NIAHGSLGFE PVYVSCIAQD TCTTTDHSSN PGPVPGSSSG ENSBTAP00000015206/1-499 ERYTGPRFTH KISHGRLGFQ PAYFSHIAWN PYTTNDLSSS RGPIPGSSSG bmy_09963T0/1-529 ERYTGPRFTH KIGHGRLGFE PVSVSHIAWN PYTANDLSSS RGPVP----- BACU019880/1-493 ERYTGPRFTH KIGHGRLGFE PVSVSHIAWN PYTANDLSSS CGPVPGSSSG ENSTTRP00000011317/1-473 ERYTGPRFTH KIGHGRLGFE PISVSHIASN PYTANDLSSS PG-------- 251 300 ENSP00000340982/1-501 PVLGSSSGAG HGSGSGSGPG CGSVPGS--- ---------- GSGPGPGSGP ENSBTAP00000015206/1-499 PVPGSSSSPG PDSSSDPGPS SSSGPGGSPG GSGRGPGHGP GPGGGSGQGP bmy_09963T0/1-529 ---------- -GFSSDPGPG SSSGPGS--- ---------- ----GSGQGP BACU019880/1-493 PVPGSSSSPG LGFSSDPGPG SSSGPGS--- ---------- ----GSGQGP ENSTTRP00000011317/1-473 ---------- LGFSSGPGPG SISGPGS--- ---------- ----GSGQGP 301 350 ENSP00000340982/1-501 GSGPGHGSGS HPGPASGPGP DTGPDSELSP CIPPGFRNLV ADRVPNYTSW ENSBTAP00000015206/1-499 GGGSGQGTDL GPAIDSRHSP GHGHGPRFNF SAPVGFRNPR GDLIPNYTGC bmy_09963T0/1-529 GDGSGRGTGP APAADSRHRP GSGQGPGFSS SAPSGFRKPR ADLLPNYASW BACU019880/1-493 GDGCGRGTGP APAADSRHRP GSGQGPGFSS SAPSGFRKPR ADLLPNYASW ENSTTRP00000011317/1-473 GNGSGRGTGP GPAADSRHRP GSGQGPGFSS SAPSGFIKPR ADLLPNYASW 351 400 ENSP00000340982/1-501 SQHCPWEPQK QPPWEFLQVL EPGARGLWKP PDIKGKLMVC YETLPRGQCL ENSBTAP00000015206/1-499 KHHCHWEPQK Q-SWKFLKVS EPGARGLWKP PEVEGKSTVL SETLPRGQCL bmy_09963T0/1-529 SHHSHWEPQK Q-PWKFLRVS EPGARGLWKP PEVEGTSKVL NETLPRGQCL BACU019880/1-493 SHHSHWEPQK Q-PWKFLQVS EPGARGLWKP PEVEGTSKVL SETLPRGQCL ENSTTRP00000011317/1-473 SHHSHWEPQK Q-PWKFLKVS EPGARGLWKP PEVEGTSKVL NETLPRGQCL 401 450 ENSP00000340982/1-501 LYNWEEERAT NHLDQVPSMQ DGSESFFFRH GHRGLLTMQL KSPMPSSTTQ ENSBTAP00000015206/1-499 LYNWEEERAT NYLDQVPVMQ DGSESFFFRH GHRGLLTLQP QSPTSSCTTQ bmy_09963T0/1-529 LYNWEEERAT NHLDQVPSMQ DGSESFFFRH GHRRLLTLEP QSPVCSSTTQ BACU019880/1-493 LYNWEEERAT NHLDQVPSMQ DGSESFFFRH GHRGLLTLEP QSPMCSSTTQ ENSTTRP00000011317/1-473 LYNWEEERAT NHLDQVPSMQ DGSESFFFRH GHRGLLTLEP QSPMCSSTTQ 451 500 ENSP00000340982/1-501 KDSYQPPGNV YWPLRGKREA MLEMLLQHQI CKEVQAEQEP TRKLFEVESV ENSBTAP00000015206/1-499 KDSYQPPKSH CQPIRGKREA ILEMLLRQQI CKEVQAEQEP TRKDSEVESV bmy_09963T0/1-529 KDSYQPPGNH SQPIRG---- --------QY SKEVQAEQES TRKDSEVESV BACU019880/1-493 KDSYQPPGNH SQPVRGKREA VLEMLLHHQI CKEVQAEQEP TRKDSEVKSV ENSTTRP00000011317/1-473 KDSYQPPGNH SQPIRGKREA MLEMFLHHQI CKEVQAEQEP TRKDSEVESV 501 550 ENSP00000340982/1-501 THHDYRMELA QAGTPAPTKP HDYRQEQPET FWIQRAPQLP TWWPLPT-QV ENSBTAP00000015206/1-499 THHDYKKELV QAGPPAPTKI HDYHTEQPET FWLERAPQLP GVSNIRTLDT bmy_09963T0/1-529 THHDYGKELV QSGPPAPTKP HDYRKEQPET FWLQRAPQLQ -V-------- BACU019880/1-493 THHDYGKELV QSGPPAPTKP HDYHKEQPET FWLQRAPQLQ -VWPLPT-WV ENSTTRP00000011317/1-473 THHDYGKELV QSGPPAPTKP HDYPKEQPET FWLQRAPQLP -RWPLPT-RV 551 600 ENSP00000340982/1-501 PAAEDYLTWK EWGFTGVQEV -LSALLRATP GEYSVNICGM NEHPVCSRTW ENSBTAP00000015206/1-499 PFRKNCSFST PVPLSLEQPL PFEPESYSQH GEISSLACQG GGQ------- bmy_09963T0/1-529 -CEGDQVL-- GVGERDGKRL -FC------P GLVESGLCPH SGTPP----- BACU019880/1-493 LAAGECLTWE EVGFTRAQQV -LSALLGATP GEYSTDVC-- -GHPVCNRTR ENSTTRP00000011317/1-473 PAAGDCLTWE EVGFTGAQQV -LSALLGATP GEYSTNVC-- NGHPVCNRTW 601 650 ENSP00000340982/1-501 TNRLCHQEMG SKKTVTQEDR GW---- ENSBTAP00000015206/1-499 ----GGGKIG RKETRPE--- ------ bmy_09963T0/1-529 ----GCQ--- ---------- ------ BACU019880/1-493 SNSLCCQEMG SKTTGPEEHR SWWGRQ ENSTTRP00000011317/1-473 SNRLCCQEMG SKTTGPEEHR SWW---