KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:57 2014 Check: 00 .. Name: bmy_08567T0/1-291 Len: 291 Check: 5049 Weight: 1.00 Name: ENSP00000259667/1-163 Len: 291 Check: 5544 Weight: 1.00 Name: ENSBTAP00000015208/1-163 Len: 291 Check: 4142 Weight: 1.00 Name: BACU019881/1-162 Len: 291 Check: 698 Weight: 1.00 Name: ENSTTRP00000011318/1-163 Len: 291 Check: 4313 Weight: 1.00 // 1 50 bmy_08567T0/1-291 MEPVWIQQAF KDILKLKSDP GAPEGKMAAA ILLAARLCGA RRMEAVAGPR ENSP00000259667/1-163 ---------- ---------- ------MAAA VVLAAGLRAA RRAVAATGVR ENSBTAP00000015208/1-163 ---------- ---------- ------MAAA VVLAAGLCVA RRAVAVAGPR BACU019881/1-162 ---------- ---------- -------AAA TVLAAGLCAA RRAVAVAGPR ENSTTRP00000011318/1-163 ---------- ---------- ------MAVA TLLAARLCVA RRAVAVAGGR 51 100 bmy_08567T0/1-291 GAQAGCRVPP RLPTACAALP GTLFLPRRRL QGCAVRSDRW SRQPLLKTRR ENSP00000259667/1-163 GGQ------- ---------- ---------- ---------- ---------- ENSBTAP00000015208/1-163 GVQ------- ---------- ---------- ---------- ---------- BACU019881/1-162 GAQ------- ---------- ---------- ---------- ---------- ENSTTRP00000011318/1-163 GGQ------- ---------- ---------- ---------- ---------- 101 150 bmy_08567T0/1-291 GRNEPAMDDG LHRPRHRGRH RVRGAAGVTD GNEVAKAQKA APRGAAPSIS ENSP00000259667/1-163 ---------- ---------- -VRGAAGVTD GNEVAKAQQA TPGGAAPTIF ENSBTAP00000015208/1-163 ---------- ---------- -VRGAAGVTD GDEVAKAQQA APGGAAPTIF BACU019881/1-162 ---------- ---------- -VRGAAAVTD GNEVAKAQQA APGGAAPTIF ENSTTRP00000011318/1-163 ---------- ---------- -VRGAAAVTD GNEVAKAQQA APGGAAPTIF 151 200 bmy_08567T0/1-291 SWILDRSLLA DVLYEDQQCL VFRDVATQAP VHFLVIPEKP IPCISQAEEE ENSP00000259667/1-163 SRILDKSLPA DILYEDQQCL VFRDVAPQAP VHFLVIPKKP IPRISQAEEE ENSBTAP00000015208/1-163 SRILDRSLPA DILYEDQQCL AFRDVAPQAP VHFLVIPKKP IPRISQAEEE BACU019881/1-162 SRILDRSLPA DILYEDQQCL VFRDVAPQAP VHFLVIPKKP IPRISQAEEE ENSTTRP00000011318/1-163 SRILDRSLPA DILYEDQQCL VFRDVAPQAP VHFLVIPKKP IPRISQAEEE 201 250 bmy_08567T0/1-291 DQKLLGHLLL VAKKTAKAGG AGRWLPTCDQ RWEAGRTICV SPAHSRTWGP ENSP00000259667/1-163 DQQLLGHLLL VAKQTAKAEG LG-------- ---DGYRLVI NDGK---LGA ENSBTAP00000015208/1-163 DQQLLGHLLL VAKETAKAEG LG-------- ---DGYRLVI NDGK---LGA BACU019881/1-162 DQQLLGHLLL VAKKTAKAEG LG-------- ---DGYRLVI NDGK---LGA ENSTTRP00000011318/1-163 DQQLLGHLLL VAKKTAKAEG LG-------- ---DGYRLVI NDGK---LGA 251 300 bmy_08567T0/1-291 TAAVASRLNL PNDQGPQTWK LGWDGEKRHP VMLINLLSLN K ENSP00000259667/1-163 QSVYHLHIHV LGGRQLQ-WP PG-------- ---------- - ENSBTAP00000015208/1-163 QSVYHLHIHV LGGRQLQ-WP PG-------- ---------- - BACU019881/1-162 QSVYHLHIHV LGGRQLQ-WP PG-------- ---------- - ENSTTRP00000011318/1-163 QSVYHLHIHV LGGRQLQ-WP PG-------- ---------- -