KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:54:59 2014 Check: 00 ..
Name: ENSTTRP00000011320/1-624 Len: 1156 Check: 2746 Weight: 1.00
Name: ENSP00000367227/1-472 Len: 1156 Check: 4696 Weight: 1.00
Name: ENSBTAP00000015212/1-744 Len: 1156 Check: 7919 Weight: 1.00
Name: BACU017523/1-890 Len: 1156 Check: 3188 Weight: 1.00
Name: bmy_09960T0/1-1156 Len: 1156 Check: 5894 Weight: 1.00
//
1 50
ENSTTRP00000011320/1-624 ---------- ---------- ---------- ---------- ----------
ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000015212/1-744 ---------- ---------- ---------- ---------- ----------
BACU017523/1-890 ---------- ---------- ---------- ---------- ----------
bmy_09960T0/1-1156 MCPGGPGLEG LKGSALERSQ IQRGRSVIRR QAEAAAAGPG YRPSSAARSR
51 100
ENSTTRP00000011320/1-624 ---------- ---------- ---------- ---------- ----------
ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000015212/1-744 ---------- ---------- ---------- ---------- ----------
BACU017523/1-890 ---------- ---------- ---------- ---------- ----------
bmy_09960T0/1-1156 PDLNSYPGPR PGPSRLDPGP GPARTPEVTP RGWERSRGSA LRAPALACPA
101 150
ENSTTRP00000011320/1-624 ---------- ---TSGSRRR GAWSSVQRSP ESPRELLPRS PAPAPGPRGH
ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000015212/1-744 ---------- ---------- ---------- ---------- ----------
BACU017523/1-890 ------MAQP LSRPLFLSRF GPWPPIPPSL RFPHRFQLRP GSQRMPRSGS
bmy_09960T0/1-1156 PPLPRAMAQP LSRPLFLSRF GPWPPTPPSP RFPHRFQLRP GSQRMPRSGS
151 200
ENSTTRP00000011320/1-624 RRSPPGGGRS ---------- ---------- ---------- ----------
ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000015212/1-744 ---------- ---------- ---------- ---------- ----------
BACU017523/1-890 QLRPPLQSVA WPPSQRLPLF HLLSQIPAQP LSQTHSQNLL KAGAQPLPFL
bmy_09960T0/1-1156 QLRPPLQSLA WPPSQRLPLF HLLSQIPAQP LSQTHSQNLL KPGAQPLPFL
201 250
ENSTTRP00000011320/1-624 ---------- ---------- ---------- ---------- ----------
ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000015212/1-744 ---------- ---------- ---------- ---------- ----------
BACU017523/1-890 QSPSQPLLPS HPLPLHKSQC PAQPNSLSQS LPSSLCLPRS LPLPSPLFHT
bmy_09960T0/1-1156 QSPSQSLLPS HPLPLHKSQC PAQPNSLSQS LPSSLCLPRS LPLPSPLFHT
251 300
ENSTTRP00000011320/1-624 --RGSPRLRS GLQLPSALLL LLLLSVLGPG AGGLFLTDYS TCSPRKLSPF
ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000015212/1-744 ---------- ---------- ---------- ---------- --SPRKLSPF
BACU017523/1-890 LPLSQPRLRS GLQLPSALLL LLLLSVLGPG VGGLFLTDYS TCSPRKLSPF
bmy_09960T0/1-1156 LPLSQPRLRS GLQLPSALLL LLLLSVLGPG AGGLFLTDYS TCSPRKLSPF
301 350
ENSTTRP00000011320/1-624 RSFASTELFH FHVPEDTFLA VWNLIIFKEQ GGTFGDHCPD QSVTVYFRSG
ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000015212/1-744 RSFASTELFH FHVPEDTFLA VWNLIIFKEQ GGTFGDHCPD QSVTVYFRSG
BACU017523/1-890 RSFASTELFH FHVPEDTFLA VWNLIIFKEQ GGTFGDHCPD QSVTVYFRSG
bmy_09960T0/1-1156 RSFASTELFH FHVPEDTFLA VWNLIIFKEQ GGTFGDHCPD QSVTVYFRSG
351 400
ENSTTRP00000011320/1-624 APPVINPLHT HFPGDTAVPG VFSLTLSWTL PNRTSGIFNV SSPLPGDWFL
ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000015212/1-744 APPVINPLHT HFPGDTAVPG VFSLTLSWTL PNRTSGIFNV SSPLPGDWFL
BACU017523/1-890 APPVINPLHT HFPGDTAVPG VFSLTLSWTL PNRTSGIFNV SSPLPGDWFL
bmy_09960T0/1-1156 APPVINPLHT HFPGDTAVPG VFSLTLSWTL PNRTSGIFNV SSPLPGDWFL
401 450
ENSTTRP00000011320/1-624 AAHLPRTHGH ISVK------ ---------- ---------- ----------
ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000015212/1-744 AAHLPQAHGH ISVK------ ---------- ---------- ----------
BACU017523/1-890 AAHLPRAHGH ISVK------ ---------- ---------- ----------
bmy_09960T0/1-1156 AAHLPRAHGH ISVKVIYAPG TTFERYKRHT VKTPEAGGPE EVCPPPQQAV
451 500
ENSTTRP00000011320/1-624 ---------- --------GL QDECQYLLXX XXXXXXXXXX XXXXXXXXXX
ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000015212/1-744 ---------- --------GL QDECQYLLQP QLIVRRLLDV AVLVPGRPSE
BACU017523/1-890 ---------- --------GL QDECQYLLQP QLIVRRLLDV AVLVPGRPSE
bmy_09960T0/1-1156 RLPLVAPRCL LPPLLVSQGL QDECQYLLQP QLIVRRLLDV AVLVPGRPSE
501 550
ENSTTRP00000011320/1-624 XXXXXXXXXX XXXXXXXXXX YRVSAQLVCV GGRGASACPL TLRLRPKAPP
ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000015212/1-744 QTLSAHNRSA LYKVFVPSFT YRVSAQLVCV GGRGASACPL TLRLRPKAPP
BACU017523/1-890 QTLSLHNRSA LYKVFVPSFT YRVSAQLVCV GGRGASACPL TLRLRPKAPP
bmy_09960T0/1-1156 QTLSLHNRSA LYKVFVPSFT YRVSAQLVCM GGRGASACPL TLRLRPKAPP
551 600
ENSTTRP00000011320/1-624 LHNSSSVACG GASVCQLELA LPPWGHWVYV RVETPSRGPG RTVCFQLCVR
ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000015212/1-744 LHNSSSVACG GASVCQLELA LPPWGHWVYV RVETPSRGPG RTIRFQLCVW
BACU017523/1-890 LHNSSSVACG GASVCQLELA LPPWGHWVYV RVETPSRGPG RTVCFQLCVR
bmy_09960T0/1-1156 LHNSSSVACG GASVCQLELA LPPWGHWVYV RVETPSRXPG RTVCFQLCVR
601 650
ENSTTRP00000011320/1-624 LQ-------- ---------- ---------- ---------- ----------
ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000015212/1-744 LQ-------- ---------- ---------- ---------- ----------
BACU017523/1-890 LQ-------- ---------- ---------- ---------- ----------
bmy_09960T0/1-1156 LQGQKPHTCA SHPACADFCG CEEAGTVAVF TGPRPRPYDL PGPAQAPLLA
651 700
ENSTTRP00000011320/1-624 ---------- --------EC PQPSLSRALV PGAAMNMPQS LGNQPLPPEL
ENSP00000367227/1-472 ---------- ---------- ---------- ----MNMPQS LGNQPLPPEP
ENSBTAP00000015212/1-744 ---------- --------EC PQPSLSRAVV PGAAMNMPQS LGNQPLPPEP
BACU017523/1-890 ---------- --------EC PQPSLSRALV PGAAMNMPQS LGNQPLPPEP
bmy_09960T0/1-1156 KTLPLGASSH WKTFRSFLEC PQPSLSHALV PGAAMNMPQS LGNQPLPPEP
701 750
ENSTTRP00000011320/1-624 SSLGAPAEGP GATSPPEHCW PVRPTLRNEL DTFSVHFYVF FGPSVALPPE
ENSP00000367227/1-472 PSLGTPAEGP GTTSPPEHCW PVRPTLRNEL DTFSVHFYIF FGPSVALPPE
ENSBTAP00000015212/1-744 PSLRTPAEGP GATSPPEHCW PVRPTLRNEL DTFSVHFYIF FGPSVALPPE
BACU017523/1-890 SSLGAPAEGP GATSPPEHCW PVRPTLRNEL DTFSVHFYVF FGPSVALPPE
bmy_09960T0/1-1156 SSLGAPAEGP RATSPPEHCW PVRPTLRNEL DTFSVHFYVF FGPSVALPPE
751 800
ENSTTRP00000011320/1-624 RPAVFALRLL PVLDSGGVLS LELQLNVSSL RQENVTVFGC LTHEVPLSLG
ENSP00000367227/1-472 RPAVFAMRLL PVLDSGGVLS LELQLNASSV RQENVTVFGC LTHEVPLSLG
ENSBTAP00000015212/1-744 RPAVFALRLL PVLDSGGVLS LELQLNVSSL RQENVTVFGC LTHEVPLSLG
BACU017523/1-890 RPAVFALRLL PVLDSGGVLS LELQLNV--- ---------- ----------
bmy_09960T0/1-1156 RPAVFALRLL PVLDSGGVLS LELQLNVSSL RQENVTVFGC LTHEVPLSLG
801 850
ENSTTRP00000011320/1-624 DAAMTCSKES LAGFLLTVSA TSRVARLRIP FPQTGTWFLT LRSLCGVGPR
ENSP00000367227/1-472 DAAVTCSKES LAGFLLSVSA TTRVARLRIP FPQTGTWFLA LRSLCGVGPR
ENSBTAP00000015212/1-744 DAAVTCSKES LAGFLLTVSA ASRVARLRIP FPQTGTWFLT LRSLCGVGPR
BACU017523/1-890 ---VLFVEKS LAGFLLTVSA TSRVARLRIP FPQTGTWFLT LRSLCG----
bmy_09960T0/1-1156 DAAMTCSKES LAGFLLTVSA TSRVARLRIP FPQTGTWFLT LRSLCGVGPR
851 900
ENSTTRP00000011320/1-624 FVRCRNATAE VRLRTFLSPC VDDCGPYGQC KLLRTHNYLY AACECKAGWR
ENSP00000367227/1-472 FVRCRNATAE VRMRTFLSPC VDDCGPYGQC KLLRTHNYLY AACECKAGWR
ENSBTAP00000015212/1-744 FVRCRNATAE VRLRTFLSPC VDDCGPYGQC KLLRTHNYLY AACECKAGWR
BACU017523/1-890 ---------- VRLRTFLSPC VDDCGPYGQC KLLRTHNYLY AACECKAGWR
bmy_09960T0/1-1156 FVRCRNATAE VRLRTFLSPC VDDCGPYGQC KLLRTHNYLY AACECKAGWR
901 950
ENSTTRP00000011320/1-624 GWGCTDSADA LTYGFQLLST LLLCLSNLMF LPPVVLAIRS QYVLEAAVY-
ENSP00000367227/1-472 GWGCTDSADA LTYGFQLLST LLLCLSNLMF LPPVVLAIRS RYVLEAAVYT
ENSBTAP00000015212/1-744 GWGCTDSADA LTYGFQLLST LLLCLSNLMF LPPVVLAIRS RYVLEAAVYT
BACU017523/1-890 GWGCTDSADA LTYGFQLLST LLLCLSNLMF LPPVVLAIRS RYVLEAAVYT
bmy_09960T0/1-1156 GWGCTDSADA LTYGFQLLST LLLCLSNLMF LPPVVLAIRG RYVLEAAVYT
951 1000
ENSTTRP00000011320/1-624 ---------- ---------- ---------- ---------- ----------
ENSP00000367227/1-472 FTMFFSTFYH ACDQPGIVVF CIMDYDVLQF CDFLGSLMSV WVTVIAMARL
ENSBTAP00000015212/1-744 FTMFFSTFYH ACDQPGIVVF CIMDYDVLQF CDFLGSLMSV WVTVIAMARL
BACU017523/1-890 FTMFFSTFYH ACDQPGIVVF CIMDYDVLQF CDFLGSLMSV WVTVIAMARL
bmy_09960T0/1-1156 FTMFFSTFYH ACDQPGIVVF CIMDYDVLQF CDFLGSLMSV WVTVIAMARL
1001 1050
ENSTTRP00000011320/1-624 ---------- ---------- ---------- ---------- ----------
ENSP00000367227/1-472 QPVVKQVLYL LGAMLLSMAL QLDRHGLWNL LGPSLFALGI LATAWTVRSV
ENSBTAP00000015212/1-744 QPVVKQVLYL LGAMLLSMAL QLDRHGLWNL LGPSLFALGI LATAWTVRSV
BACU017523/1-890 QPVVKQVLYL LGAMLLSMAL QLDRHGLWNL LGPSLFALGI LATAWTVRSV
bmy_09960T0/1-1156 QPVVKQVLYL LGAMLLSMAL QLDRHGLWNL LGPSLFALGI LATAWTVRSV
1051 1100
ENSTTRP00000011320/1-624 ---------- ---------- ---------- ---------- ----------
ENSP00000367227/1-472 RRRHCYPPTW RRWLFYLCPG SLIAGSAVLL YAFVETRDNY FYIHSIWHML
ENSBTAP00000015212/1-744 RRRHCYPPTW RRWLFCLCPG SLIAGSAILL YAFVETRDNY FYIHSIWHML
BACU017523/1-890 RRRHCYPPTW RRWLFYLCPG SLIAGSAILL YAFVETRDNY FYIHSIWHML
bmy_09960T0/1-1156 RRRHCYPPTW RRWLFYLCPG SLIAGSAILL YAFVETRDNY FYIHSIWHML
1101 1150
ENSTTRP00000011320/1-624 ---------- ---------- ---------- ---------- ----------
ENSP00000367227/1-472 IAGSVGFLLP PRAKTDHGVP SGARARGCGY QLCINEQEEL GLVGPGGATV
ENSBTAP00000015212/1-744 IAGSVGFLLP PRAKTDRRVP SGARARGCGY QLCINEQEEL GLVGPGGATV
BACU017523/1-890 IAGSVGFLLP PRAKTDRQVP SGARARGCGY QLCINEQEEL GLVGPGGATV
bmy_09960T0/1-1156 IAGSVGFLLP PRAKTDRQVP SGARARGCGY QLCINEQEEL GLVGPGGATV
1151 1200
ENSTTRP00000011320/1-624 ------
ENSP00000367227/1-472 SSICAS
ENSBTAP00000015212/1-744 SSICAS
BACU017523/1-890 SSICAS
bmy_09960T0/1-1156 SSICTS