KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:59 2014 Check: 00 .. Name: ENSTTRP00000011320/1-624 Len: 1156 Check: 2746 Weight: 1.00 Name: ENSP00000367227/1-472 Len: 1156 Check: 4696 Weight: 1.00 Name: ENSBTAP00000015212/1-744 Len: 1156 Check: 7919 Weight: 1.00 Name: BACU017523/1-890 Len: 1156 Check: 3188 Weight: 1.00 Name: bmy_09960T0/1-1156 Len: 1156 Check: 5894 Weight: 1.00 // 1 50 ENSTTRP00000011320/1-624 ---------- ---------- ---------- ---------- ---------- ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015212/1-744 ---------- ---------- ---------- ---------- ---------- BACU017523/1-890 ---------- ---------- ---------- ---------- ---------- bmy_09960T0/1-1156 MCPGGPGLEG LKGSALERSQ IQRGRSVIRR QAEAAAAGPG YRPSSAARSR 51 100 ENSTTRP00000011320/1-624 ---------- ---------- ---------- ---------- ---------- ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015212/1-744 ---------- ---------- ---------- ---------- ---------- BACU017523/1-890 ---------- ---------- ---------- ---------- ---------- bmy_09960T0/1-1156 PDLNSYPGPR PGPSRLDPGP GPARTPEVTP RGWERSRGSA LRAPALACPA 101 150 ENSTTRP00000011320/1-624 ---------- ---TSGSRRR GAWSSVQRSP ESPRELLPRS PAPAPGPRGH ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015212/1-744 ---------- ---------- ---------- ---------- ---------- BACU017523/1-890 ------MAQP LSRPLFLSRF GPWPPIPPSL RFPHRFQLRP GSQRMPRSGS bmy_09960T0/1-1156 PPLPRAMAQP LSRPLFLSRF GPWPPTPPSP RFPHRFQLRP GSQRMPRSGS 151 200 ENSTTRP00000011320/1-624 RRSPPGGGRS ---------- ---------- ---------- ---------- ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015212/1-744 ---------- ---------- ---------- ---------- ---------- BACU017523/1-890 QLRPPLQSVA WPPSQRLPLF HLLSQIPAQP LSQTHSQNLL KAGAQPLPFL bmy_09960T0/1-1156 QLRPPLQSLA WPPSQRLPLF HLLSQIPAQP LSQTHSQNLL KPGAQPLPFL 201 250 ENSTTRP00000011320/1-624 ---------- ---------- ---------- ---------- ---------- ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015212/1-744 ---------- ---------- ---------- ---------- ---------- BACU017523/1-890 QSPSQPLLPS HPLPLHKSQC PAQPNSLSQS LPSSLCLPRS LPLPSPLFHT bmy_09960T0/1-1156 QSPSQSLLPS HPLPLHKSQC PAQPNSLSQS LPSSLCLPRS LPLPSPLFHT 251 300 ENSTTRP00000011320/1-624 --RGSPRLRS GLQLPSALLL LLLLSVLGPG AGGLFLTDYS TCSPRKLSPF ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015212/1-744 ---------- ---------- ---------- ---------- --SPRKLSPF BACU017523/1-890 LPLSQPRLRS GLQLPSALLL LLLLSVLGPG VGGLFLTDYS TCSPRKLSPF bmy_09960T0/1-1156 LPLSQPRLRS GLQLPSALLL LLLLSVLGPG AGGLFLTDYS TCSPRKLSPF 301 350 ENSTTRP00000011320/1-624 RSFASTELFH FHVPEDTFLA VWNLIIFKEQ GGTFGDHCPD QSVTVYFRSG ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015212/1-744 RSFASTELFH FHVPEDTFLA VWNLIIFKEQ GGTFGDHCPD QSVTVYFRSG BACU017523/1-890 RSFASTELFH FHVPEDTFLA VWNLIIFKEQ GGTFGDHCPD QSVTVYFRSG bmy_09960T0/1-1156 RSFASTELFH FHVPEDTFLA VWNLIIFKEQ GGTFGDHCPD QSVTVYFRSG 351 400 ENSTTRP00000011320/1-624 APPVINPLHT HFPGDTAVPG VFSLTLSWTL PNRTSGIFNV SSPLPGDWFL ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015212/1-744 APPVINPLHT HFPGDTAVPG VFSLTLSWTL PNRTSGIFNV SSPLPGDWFL BACU017523/1-890 APPVINPLHT HFPGDTAVPG VFSLTLSWTL PNRTSGIFNV SSPLPGDWFL bmy_09960T0/1-1156 APPVINPLHT HFPGDTAVPG VFSLTLSWTL PNRTSGIFNV SSPLPGDWFL 401 450 ENSTTRP00000011320/1-624 AAHLPRTHGH ISVK------ ---------- ---------- ---------- ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015212/1-744 AAHLPQAHGH ISVK------ ---------- ---------- ---------- BACU017523/1-890 AAHLPRAHGH ISVK------ ---------- ---------- ---------- bmy_09960T0/1-1156 AAHLPRAHGH ISVKVIYAPG TTFERYKRHT VKTPEAGGPE EVCPPPQQAV 451 500 ENSTTRP00000011320/1-624 ---------- --------GL QDECQYLLXX XXXXXXXXXX XXXXXXXXXX ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015212/1-744 ---------- --------GL QDECQYLLQP QLIVRRLLDV AVLVPGRPSE BACU017523/1-890 ---------- --------GL QDECQYLLQP QLIVRRLLDV AVLVPGRPSE bmy_09960T0/1-1156 RLPLVAPRCL LPPLLVSQGL QDECQYLLQP QLIVRRLLDV AVLVPGRPSE 501 550 ENSTTRP00000011320/1-624 XXXXXXXXXX XXXXXXXXXX YRVSAQLVCV GGRGASACPL TLRLRPKAPP ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015212/1-744 QTLSAHNRSA LYKVFVPSFT YRVSAQLVCV GGRGASACPL TLRLRPKAPP BACU017523/1-890 QTLSLHNRSA LYKVFVPSFT YRVSAQLVCV GGRGASACPL TLRLRPKAPP bmy_09960T0/1-1156 QTLSLHNRSA LYKVFVPSFT YRVSAQLVCM GGRGASACPL TLRLRPKAPP 551 600 ENSTTRP00000011320/1-624 LHNSSSVACG GASVCQLELA LPPWGHWVYV RVETPSRGPG RTVCFQLCVR ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015212/1-744 LHNSSSVACG GASVCQLELA LPPWGHWVYV RVETPSRGPG RTIRFQLCVW BACU017523/1-890 LHNSSSVACG GASVCQLELA LPPWGHWVYV RVETPSRGPG RTVCFQLCVR bmy_09960T0/1-1156 LHNSSSVACG GASVCQLELA LPPWGHWVYV RVETPSRXPG RTVCFQLCVR 601 650 ENSTTRP00000011320/1-624 LQ-------- ---------- ---------- ---------- ---------- ENSP00000367227/1-472 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015212/1-744 LQ-------- ---------- ---------- ---------- ---------- BACU017523/1-890 LQ-------- ---------- ---------- ---------- ---------- bmy_09960T0/1-1156 LQGQKPHTCA SHPACADFCG CEEAGTVAVF TGPRPRPYDL PGPAQAPLLA 651 700 ENSTTRP00000011320/1-624 ---------- --------EC PQPSLSRALV PGAAMNMPQS LGNQPLPPEL ENSP00000367227/1-472 ---------- ---------- ---------- ----MNMPQS LGNQPLPPEP ENSBTAP00000015212/1-744 ---------- --------EC PQPSLSRAVV PGAAMNMPQS LGNQPLPPEP BACU017523/1-890 ---------- --------EC PQPSLSRALV PGAAMNMPQS LGNQPLPPEP bmy_09960T0/1-1156 KTLPLGASSH WKTFRSFLEC PQPSLSHALV PGAAMNMPQS LGNQPLPPEP 701 750 ENSTTRP00000011320/1-624 SSLGAPAEGP GATSPPEHCW PVRPTLRNEL DTFSVHFYVF FGPSVALPPE ENSP00000367227/1-472 PSLGTPAEGP GTTSPPEHCW PVRPTLRNEL DTFSVHFYIF FGPSVALPPE ENSBTAP00000015212/1-744 PSLRTPAEGP GATSPPEHCW PVRPTLRNEL DTFSVHFYIF FGPSVALPPE BACU017523/1-890 SSLGAPAEGP GATSPPEHCW PVRPTLRNEL DTFSVHFYVF FGPSVALPPE bmy_09960T0/1-1156 SSLGAPAEGP RATSPPEHCW PVRPTLRNEL DTFSVHFYVF FGPSVALPPE 751 800 ENSTTRP00000011320/1-624 RPAVFALRLL PVLDSGGVLS LELQLNVSSL RQENVTVFGC LTHEVPLSLG ENSP00000367227/1-472 RPAVFAMRLL PVLDSGGVLS LELQLNASSV RQENVTVFGC LTHEVPLSLG ENSBTAP00000015212/1-744 RPAVFALRLL PVLDSGGVLS LELQLNVSSL RQENVTVFGC LTHEVPLSLG BACU017523/1-890 RPAVFALRLL PVLDSGGVLS LELQLNV--- ---------- ---------- bmy_09960T0/1-1156 RPAVFALRLL PVLDSGGVLS LELQLNVSSL RQENVTVFGC LTHEVPLSLG 801 850 ENSTTRP00000011320/1-624 DAAMTCSKES LAGFLLTVSA TSRVARLRIP FPQTGTWFLT LRSLCGVGPR ENSP00000367227/1-472 DAAVTCSKES LAGFLLSVSA TTRVARLRIP FPQTGTWFLA LRSLCGVGPR ENSBTAP00000015212/1-744 DAAVTCSKES LAGFLLTVSA ASRVARLRIP FPQTGTWFLT LRSLCGVGPR BACU017523/1-890 ---VLFVEKS LAGFLLTVSA TSRVARLRIP FPQTGTWFLT LRSLCG---- bmy_09960T0/1-1156 DAAMTCSKES LAGFLLTVSA TSRVARLRIP FPQTGTWFLT LRSLCGVGPR 851 900 ENSTTRP00000011320/1-624 FVRCRNATAE VRLRTFLSPC VDDCGPYGQC KLLRTHNYLY AACECKAGWR ENSP00000367227/1-472 FVRCRNATAE VRMRTFLSPC VDDCGPYGQC KLLRTHNYLY AACECKAGWR ENSBTAP00000015212/1-744 FVRCRNATAE VRLRTFLSPC VDDCGPYGQC KLLRTHNYLY AACECKAGWR BACU017523/1-890 ---------- VRLRTFLSPC VDDCGPYGQC KLLRTHNYLY AACECKAGWR bmy_09960T0/1-1156 FVRCRNATAE VRLRTFLSPC VDDCGPYGQC KLLRTHNYLY AACECKAGWR 901 950 ENSTTRP00000011320/1-624 GWGCTDSADA LTYGFQLLST LLLCLSNLMF LPPVVLAIRS QYVLEAAVY- ENSP00000367227/1-472 GWGCTDSADA LTYGFQLLST LLLCLSNLMF LPPVVLAIRS RYVLEAAVYT ENSBTAP00000015212/1-744 GWGCTDSADA LTYGFQLLST LLLCLSNLMF LPPVVLAIRS RYVLEAAVYT BACU017523/1-890 GWGCTDSADA LTYGFQLLST LLLCLSNLMF LPPVVLAIRS RYVLEAAVYT bmy_09960T0/1-1156 GWGCTDSADA LTYGFQLLST LLLCLSNLMF LPPVVLAIRG RYVLEAAVYT 951 1000 ENSTTRP00000011320/1-624 ---------- ---------- ---------- ---------- ---------- ENSP00000367227/1-472 FTMFFSTFYH ACDQPGIVVF CIMDYDVLQF CDFLGSLMSV WVTVIAMARL ENSBTAP00000015212/1-744 FTMFFSTFYH ACDQPGIVVF CIMDYDVLQF CDFLGSLMSV WVTVIAMARL BACU017523/1-890 FTMFFSTFYH ACDQPGIVVF CIMDYDVLQF CDFLGSLMSV WVTVIAMARL bmy_09960T0/1-1156 FTMFFSTFYH ACDQPGIVVF CIMDYDVLQF CDFLGSLMSV WVTVIAMARL 1001 1050 ENSTTRP00000011320/1-624 ---------- ---------- ---------- ---------- ---------- ENSP00000367227/1-472 QPVVKQVLYL LGAMLLSMAL QLDRHGLWNL LGPSLFALGI LATAWTVRSV ENSBTAP00000015212/1-744 QPVVKQVLYL LGAMLLSMAL QLDRHGLWNL LGPSLFALGI LATAWTVRSV BACU017523/1-890 QPVVKQVLYL LGAMLLSMAL QLDRHGLWNL LGPSLFALGI LATAWTVRSV bmy_09960T0/1-1156 QPVVKQVLYL LGAMLLSMAL QLDRHGLWNL LGPSLFALGI LATAWTVRSV 1051 1100 ENSTTRP00000011320/1-624 ---------- ---------- ---------- ---------- ---------- ENSP00000367227/1-472 RRRHCYPPTW RRWLFYLCPG SLIAGSAVLL YAFVETRDNY FYIHSIWHML ENSBTAP00000015212/1-744 RRRHCYPPTW RRWLFCLCPG SLIAGSAILL YAFVETRDNY FYIHSIWHML BACU017523/1-890 RRRHCYPPTW RRWLFYLCPG SLIAGSAILL YAFVETRDNY FYIHSIWHML bmy_09960T0/1-1156 RRRHCYPPTW RRWLFYLCPG SLIAGSAILL YAFVETRDNY FYIHSIWHML 1101 1150 ENSTTRP00000011320/1-624 ---------- ---------- ---------- ---------- ---------- ENSP00000367227/1-472 IAGSVGFLLP PRAKTDHGVP SGARARGCGY QLCINEQEEL GLVGPGGATV ENSBTAP00000015212/1-744 IAGSVGFLLP PRAKTDRRVP SGARARGCGY QLCINEQEEL GLVGPGGATV BACU017523/1-890 IAGSVGFLLP PRAKTDRQVP SGARARGCGY QLCINEQEEL GLVGPGGATV bmy_09960T0/1-1156 IAGSVGFLLP PRAKTDRQVP SGARARGCGY QLCINEQEEL GLVGPGGATV 1151 1200 ENSTTRP00000011320/1-624 ------ ENSP00000367227/1-472 SSICAS ENSBTAP00000015212/1-744 SSICAS BACU017523/1-890 SSICAS bmy_09960T0/1-1156 SSICTS