KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:54:59 2014 Check: 00 .. Name: ENSP00000453940/1-793 Len: 869 Check: 9870 Weight: 1.00 Name: ENSTTRP00000006354/1-827 Len: 869 Check: 8557 Weight: 1.00 Name: ENSBTAP00000015213/1-730 Len: 869 Check: 7390 Weight: 1.00 Name: bmy_04193T0/1-586 Len: 869 Check: 1750 Weight: 1.00 // 1 50 ENSP00000453940/1-793 ------MALS PWTPGLGAG- EKLVQAAAVS TGPSLELCTL PSTLGSSVAV ENSTTRP00000006354/1-827 ------MAVS SWSSKLGFGS EKALQAAAVS TGPSLELRTF PSTLCSSVAA ENSBTAP00000015213/1-730 MRKSSKMALS SWSPELGLGS EKALPVAAVS TGPSLELCTF PSTLGSSVAT bmy_04193T0/1-586 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000453940/1-793 EALEQLFVVE QSLQSDYFKC NEEAKIFLKD IAVAVKKLEE MRKATIDLLE ENSTTRP00000006354/1-827 AALEQLFVVE QSLQSDYFKC NEEAKTFLKD VAIAVKKLEE MRKSTIDLLE ENSBTAP00000015213/1-730 DALEQLLVVE QSLQSDYFKC NEEAKNFLKD VAIAVKKLEE MRKSTIDLLE bmy_04193T0/1-586 ---------- ---------- ---------- ---------- ---MVVHLIK 101 150 ENSP00000453940/1-793 IESMELNKLY YLLETLPNSI KRELEECVRD ARRLNLFEIN TIKMRITRTE ENSTTRP00000006354/1-827 IESMELSRLY FLLETLPASV SREFEECVRD ARRLNLVEIN QLHMKITKIN ENSBTAP00000015213/1-730 IESMELSRLY FVLETLPTSV SRELEECVRD ARRVNLVEMS ELHTKITRIN bmy_04193T0/1-586 ------QTLH FFLESHP--- ---------- ---------- ---------- 151 200 ENSP00000453940/1-793 NEIELLKKKI TDLTKYNEAL GEKQEELARK HARFVLSLNQ TMEKKATTTV ENSTTRP00000006354/1-827 DEIEFLKKKI LDLKKINKAL GEQQEELARR YENFVLSLNH AMKEKATITV ENSBTAP00000015213/1-730 DEIEFLKKKI LHLQTDNTAL GERQEELAKH YGKIVLSVNH AMKEKATTTI bmy_04193T0/1-586 ---------- FHAKNDSFSP SEQQEELARH YENVVLSLNH AMKEKATTTV 201 250 ENSP00000453940/1-793 YINETYTKIN LKREDIALQK KCIQEAEELM EKERAEYLIR KQELTAQINE ENSTTRP00000006354/1-827 YINEIYTKVN SEKKELELQK RYIQEVEEQM EREKAEYLEK KQKLSQEIDE ENSBTAP00000015213/1-730 YINETYTKIN LEKKELELQK TYIQEIEEQI ERERAEYLKK KEKLNQEIEE bmy_04193T0/1-586 YINETYTKIN SEKKELELQK RYIQEVEEQM EREKAEYLKK KQKLSQEIDE 251 300 ENSP00000453940/1-793 FENTREVKRM ETYQKKKELD KLQTKMSKIK ETVTVSAAVL SDHNLEIARL ENSTTRP00000006354/1-827 YKKLCELKRK ETYKKKKELD TLRHKMTKMR ETLAASRVVL SDHNLEISQL ENSBTAP00000015213/1-730 YKKLCELKRK ETYAKKKELD KLRLTMTKMR ETVTTSTVVL SDHNLELARL bmy_04193T0/1-586 YKKLCELKRK ETYKKKKELD RLRLKMTKIR ETVTTSRVIL SDHNLERSRL 301 350 ENSP00000453940/1-793 HESIRYWEQE VSELKKDLAI LEAKLCFFTD NKEKLDDISN DEKNEFLNKI ENSTTRP00000006354/1-827 QESIRHWEQQ VEDMKKSCKI LEDKMLFFRN NKEKLDDESN FEKKELLLKI ENSBTAP00000015213/1-730 QESIREWEHK IEDMKKSCKI LEDKMLFFKN NREKLDDSSN FEKSELLLKI bmy_04193T0/1-586 QESIRHWEQQ VEDMKKSCKI LEDKMLFFRN NKEKLDDASN FEKNELLLTI 351 400 ENSP00000453940/1-793 KQLVETLHAA RMEYKDLREK MKTLARQYKI VLSEEEKAFL QKQKIHDENQ ENSTTRP00000006354/1-827 KQMAEKLHKC HFKNKDLREK LHTVSRQYKI VLNEEDKVFM QKQKIYSENQ ENSBTAP00000015213/1-730 KQMTEKLHNC RLENKALREK LHTVSRQYKI VLNEEDKVFM QKRKIYSENQ bmy_04193T0/1-586 KQMAEKLHKC HFKNKDLREK LHTVTRQYKI VLNEEDKVFM QKQKIYSENQ 401 450 ENSP00000453940/1-793 KQLTFISQKE YFLSQKRVDI KNMEEGLITL QELQQATKTV YQQQIKILSA ENSTTRP00000006354/1-827 KQLAFISQKE NFLSKRKVDI RNMEEGLIRL NELHRATKEA YRKQIKVLND ENSBTAP00000015213/1-730 KQLAFIAQKE NFLSKRKVDI KNMEEGLITL GELHRATKEV YRKQIKILNE bmy_04193T0/1-586 KQLAFIAQKE NFLSKRKVDI KNMEEGLITL NELHRYMMMS FP-------- 451 500 ENSP00000453940/1-793 NLERESQRCV ITQWKMACLR KKHARWTAKI KAEIQAITEK IQNAEVRRIE ENSTTRP00000006354/1-827 NLERKLQRCI ITQWKIACLL KKHARWTNKI RAEIQEILEK MQDAELRRSK ENSBTAP00000015213/1-730 NMERETQRCI ITQWKIACLR KKHARWVKKI KDEIKELIDK IQEAENRRSE bmy_04193T0/1-586 --------CI ITQWKIACLL KKHARWTNMI RAETQEIIDK IQDAELRRSE 501 550 ENSP00000453940/1-793 LLNETSFRQQ EISGFVAQIE KLTTELKEEE KAFVNKEKML MKELSKYE-- ENSTTRP00000006354/1-827 LLQETSFREN EVNEFLAQIE QLTLELKQEE EEFVAKEKEL IQELSEYE-- ENSBTAP00000015213/1-730 LIEETSIREH DINEFLAKIE QLTLELKQEE DAFVIKERKL IQELSKFE-- bmy_04193T0/1-586 LLQETSFREN EINEFLAQIE QLTLELKQEE EEFVAKEKKL IRELSKYEVN 551 600 ENSP00000453940/1-793 ---------- ------EIFV KETQINKEKE EELVEYLPQL QVAEQEYKEK ENSTTRP00000006354/1-827 ---------- ------QRFT EETQINKEKE SELVECLPQL QVAEEEYMDK ENSBTAP00000015213/1-730 ---------- ------QRFA EEAQISKEKE VELDKCLPQL QVAEEEFTDK bmy_04193T0/1-586 FILRLRIILD GDMQGRQRFA EETQINKEKE GELVECLPQL QVAEEEYMDK 601 650 ENSP00000453940/1-793 RRKLEELSNI ITAQRQEEDL LNNHIFLFTR DFSRYISNM- ---------- ENSTTRP00000006354/1-827 NRQFENLTDT LTAQKQEQNL RNYDISQLSR DFLRYLNKT- ---------- ENSBTAP00000015213/1-730 NRKFQNLIET VTAQKNEQNL LNNNISQFTR DFIRYINNT- ---------- bmy_04193T0/1-586 NRQFENLVDI LKAQKQEQNL LNDHISQLSR DFLTYLNNTV KSQFELYAII 651 700 ENSP00000453940/1-793 -------EDV KQELQQLRDQ ESKKNKDHFE TLKNLENGFY INDQKADLLL ENSTTRP00000006354/1-827 -------XXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000015213/1-730 -------KKV KQELKQLREH ESYKTKAHFE ILKSLENEIY LHDLKTDALI bmy_04193T0/1-586 VGFMFEQNKV KQELKQLRDH ESHKIKAHFE VLKHLENEIY VHDLKTDDLL 701 750 ENSP00000453940/1-793 LENKKLKEYI LYLKNNIEKY REGQEALMHT SSDLS-RQLI AQEAQYKDLW ENSTTRP00000006354/1-827 XXXXXXXXYI AYIKNSTDXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000015213/1-730 LENKRLKEYI AYLKDNIEQY ERGGEDLVRS SSDLS-CQLT DLQTQYSDLW bmy_04193T0/1-586 LENKRLKEYI AYIKNSTEQH KKGGEDLMCT SSDLS-SQLT ALQSK----- 751 800 ENSP00000453940/1-793 AEFQTTVKIL VDNGEETLQD INNLTDKLRE RDEKMQHVST WLRGSLEGLR ENSTTRP00000006354/1-827 TEFWTTLKEL VESGNETLQE IKNLIGKLHE RDEKIEQISI WLQEEIEEMR ENSBTAP00000015213/1-730 AEFWTTLK-- ---------- ---------- ---------- ---------- bmy_04193T0/1-586 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000453940/1-793 LLVEQESPMD LLKKKKHIRT RVHFPVVKCT EKNTLTK--- ---------- ENSTTRP00000006354/1-827 FLMEQESQTD PLSKHLRALL VTSKKKRECL SNLVIPNNVT YVQNVDSHLG ENSBTAP00000015213/1-730 ---------- --KRRKRVLL K--------- ---------- ---------- bmy_04193T0/1-586 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000453940/1-793 ---------- --------- ENSTTRP00000006354/1-827 LNIAAVLGKS PFHLSESPK ENSBTAP00000015213/1-730 ---------- --------- bmy_04193T0/1-586 ---------- ---------