KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:55:02 2014 Check: 00 .. Name: ENSP00000311984/1-390 Len: 416 Check: 6432 Weight: 1.00 Name: BACU017413/1-386 Len: 416 Check: 6006 Weight: 1.00 Name: ENSBTAP00000015238/1-329 Len: 416 Check: 3460 Weight: 1.00 Name: bmy_03975T0/1-361 Len: 416 Check: 200 Weight: 1.00 Name: ENSTTRP00000010330/1-355 Len: 416 Check: 8601 Weight: 1.00 // 1 50 ENSP00000311984/1-390 MVTRAGAGTA VAGAVVVALL SAALALYGPP LDAVLERAFS LRKAHSIKDM BACU017413/1-386 MATRAGAGAA VAGAAVVAVL SAALVLYGPP LDAVLNRAFP LHTARSVTDM ENSBTAP00000015238/1-329 MALGPGC-RA VRGCR----- ---------- --PVLKRAFS LHKAHSVKDM bmy_03975T0/1-361 MATRAGAGAA VAGAAVVAVL SAALVLYGPP LDAVLNRAFP LHTARSVTDM ENSTTRP00000010330/1-355 MATRVGAGAA VAGAAVVAVL SAALVLYGPP LDAVLNRAFP LHTARSVTDM 51 100 ENSP00000311984/1-390 ENTLQLVRNI IPPLSSTKHK GQDGRIGVVG GCQEYTGAPY FAAISALKVG BACU017413/1-386 EAALQLVRNV VPPLAAWQHK GQAGRIGVVG GCPEYTGAPY FAAISALKVG ENSBTAP00000015238/1-329 ESILQLVRSV VPALTTKKHK GQDGRIGVVG GCREYTGAPY FAAISALKVG bmy_03975T0/1-361 EAALQLVRNV VPPLAAWKHK GQAGRIGVVG GCPEYTGAPY FAAISALKVG ENSTTRP00000010330/1-355 EAALQLVRNV VPPLAAWKHK GQAGRIGVVG GCPEYTGAPY FAAISALKVG 101 150 ENSP00000311984/1-390 ADLSHVFCAS AAAPVIKAYS PELIVHPVLD SPNAVHEVEK WLPRLHALVV BACU017413/1-386 ADLSHVFSTQ DAAPVIKSYS PELIVHPVLD SPSAVQDVEK WLPRLHALVV ENSBTAP00000015238/1-329 ADLSHVFCTQ EAAPVIKAYS PELIVHPVLD SPEAVRDVEQ WLPRLHALVV bmy_03975T0/1-361 ADLSHVFSTQ DAAPVIKSYS PELIVHPVLD SPSAVQDVEK WLPRLHALVV ENSTTRP00000010330/1-355 ADLSHVFTTQ DAAPVIKSYS PELIVHPVLD SPSAVQDVEK WLPRLHALVV 151 200 ENSP00000311984/1-390 GPGLGRDD-A LLRNVQGILE VSKARDIPVV IDADGLWLVA QQPALIHGYR BACU017413/1-386 GPGLGRDXGA LLENVKGILE ASKARGIPIV IDADGLWLVA QQPALIQGYQ ENSBTAP00000015238/1-329 GPGLGRDD-A LLENVKGILE ASKARGIPVV IDADGLWLIA QQPALIQGYR bmy_03975T0/1-361 GPGLGRDD-A LLENVKGILE ASKARGIPIV IDADGLWLVA QQPALIQGYQ ENSTTRP00000010330/1-355 GPGLGRDD-V LLENVKGILE ASRTRGIPIV IDADGLWLVA QQPALIQGYQ 201 250 ENSP00000311984/1-390 KAVLTPNHVE FSRLYDAVLR GPMDSDDSHG SVLRLSQALG NVTVVQKGER BACU017413/1-386 KAVLTPNHME FSRLAEAVLG DALDGRDRCR AVLSLSRALG NVTVVQKGEQ ENSBTAP00000015238/1-329 KAVLTPNHVE FGRLSEAVLG VPLDGGDRHG AVLRLSQALG NVTVVQKGEQ bmy_03975T0/1-361 KAVLTPNHME FSRLAEAVLG DALDGRDRCR AVLSLSRALG NVTVVQKGEQ ENSTTRP00000010330/1-355 KVVLTPNHVE FSRLAEAVLG DPLDGRDRYR SVQRLSQALG NVTVVQKGEQ 251 300 ENSP00000311984/1-390 DILSNGQQ-- --VLVCSQEG SSRRCGGQGD LLS-GSLGVL VHW------- BACU017413/1-386 DVISDGEQGE WPRASCRVSA SHAGHQPQGD LFTHGQSHTV THVHTYPPER ENSBTAP00000015238/1-329 DVISDGEQ-- --VLECSQEG SGRRCGGQGD LLS-GSLGVL AHW------- bmy_03975T0/1-361 DVISDGEQ-- --VLTCSQEG SGRRCGGQGD LLS-GSLGIL AHW------- ENSTTRP00000010330/1-355 DVISDGGQ-- --ALTCSREG SGRRCGGQGD LLS-GSLGVL AHW------- 301 350 ENSP00000311984/1-390 -ALLAGPQKT NGGISDLKLT IWGPEIETGV KTRAQGSCGP RTTTPTSPHL BACU017413/1-386 DSLVSVSTTT SG--KAIFVL FLAV----LR REVAAMSAGP GR------HQ ENSBTAP00000015238/1-329 -ALRAGPQKT GG-PSPLLVA AFGA----CA LTRQCSQQAF QK------YG bmy_03975T0/1-361 -ALLAGPEKT NG-SGPLLVA AFGA----CA LTRQCARQAF QK------HG ENSTTRP00000010330/1-355 -ALLAGPEKT NGATTPYRLP QVQP----AP --RGCMWCLR AH------HA 351 400 ENSP00000311984/1-390 LLSPSPQVQP SPGGRVWRLL SHQAVQPPSL PEARSLHHHL RHDRRGGGRL BACU017413/1-386 VQGAVPSVL- ---------- -------CKE SPERRLWTAG DPAGPLPPRL ENSBTAP00000015238/1-329 RATTTSDMV- ---------- -------AEV GPAFRRLFEA ---------- bmy_03975T0/1-361 RATTTTDMI- ---------- -------TEL GPAFSRLFET SADGGVAPTG ENSTTRP00000010330/1-355 VCSPS----- ---------- ---------L PEARTRHHHH GHDQGARARV 401 450 ENSP00000311984/1-390 QQAL------ ------ BACU017413/1-386 RHRCSCLSLS LLPVVL ENSBTAP00000015238/1-329 ---------- ------ bmy_03975T0/1-361 GLRL------ ------ ENSTTRP00000010330/1-355 QQTLR----- ------