KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:55:02 2014 Check: 00 .. Name: ENSP00000257347/1-564 Len: 792 Check: 655 Weight: 1.00 Name: ENSTTRP00000010348/1-487 Len: 792 Check: 6935 Weight: 1.00 Name: ENSBTAP00000015242/1-555 Len: 792 Check: 2427 Weight: 1.00 Name: bmy_03974T0/1-473 Len: 792 Check: 4028 Weight: 1.00 Name: BACU017412/1-687 Len: 792 Check: 6393 Weight: 1.00 // 1 50 ENSP00000257347/1-564 MLRTTRG--- ---PGLGPPL LQAALGL--- ---------- ---------- ENSTTRP00000010348/1-487 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015242/1-555 MLWTRR---- ----ACGGAW L--------- ---------- ---------- bmy_03974T0/1-473 ----TRG--- ---VPVGPSL LRAV------ ---------- ---------- BACU017412/1-687 ----MNGWCP SFALSCGDRV CAEVQTCSVC CAGVQTCTVC CAGVQTCSVC 51 100 ENSP00000257347/1-564 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010348/1-487 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015242/1-555 ---------- ---------- ---------- ---------- ---------- bmy_03974T0/1-473 ---------- ---------- ---------- ---------- ---------- BACU017412/1-687 CAGVQTXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 101 150 ENSP00000257347/1-564 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010348/1-487 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015242/1-555 ---------- ---------- ---------- ---------- ---------- bmy_03974T0/1-473 ---------- ---------- ---------- ---------- ---------- BACU017412/1-687 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 151 200 ENSP00000257347/1-564 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010348/1-487 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015242/1-555 ---------- ---------- ---------- ---------- ---------- bmy_03974T0/1-473 ---------- ---------- ---------- ---------- ---------- BACU017412/1-687 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 201 250 ENSP00000257347/1-564 ---------- ---------- ---------- ---------- --------GR ENSTTRP00000010348/1-487 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015242/1-555 ---------- ---------- ---------- ---------- --------LR bmy_03974T0/1-473 ---------- ---------- ---------- ---------- --------LG BACU017412/1-687 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 251 300 ENSP00000257347/1-564 AGWHWPAGRA ASGGRGRAWL QPTGRETGVQ VYNSLTGRKE PLIVAHAEAA ENSTTRP00000010348/1-487 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015242/1-555 AARGPEPGRS ASGARGQGWL QPTGYDTGVK VYNSLTRRKD PLIVSRADAA bmy_03974T0/1-473 LGPGPRPGRA ASGARGQGWL QPAGYDTGVK VYNSLTGRKD PLIVSGADTA BACU017412/1-687 XXXXXXXXXX XSGARGQGWL QPAGYDTGVK VYNSLTGRKD PLIVSGADTA 301 350 ENSP00000257347/1-564 SWYSCGPTVY DHAHLGHACS YVRFDIIRRI LTKVFGCSIV MVMGITDVDD ENSTTRP00000010348/1-487 --YSCGPTVY DHAHLGHACS YVRFDIIRRI LTRVFGCNII MVMGITDVDD ENSBTAP00000015242/1-555 SWYSCGPTVY DHAHLGHACS YVRFDIIRRI LSRVFGCTVV MVMGITDVDD bmy_03974T0/1-473 SWYSCGPTVY DHAHLGHACS YVRFDIIRRI LTRVFGCNVI MVMGITDVDD BACU017412/1-687 SWYSCGPTVY DHAHLGHACS YVRFDIIRRI LTRVFGCNVI MVMGITDVDD 351 400 ENSP00000257347/1-564 KIIKRANEMN ISPASLASLY EEDFKQDMAA LKVLPPTVYL RVTENIPQII ENSTTRP00000010348/1-487 KIIKRAKEMN MSPASLANLY EEDFKQDMAA LKVLPPTVYL RVTENIPQII ENSBTAP00000015242/1-555 KIIRRANEMS VSPASLARLY EEDFKQDMAA LKVLPPTAYL RVTEHVPQIV bmy_03974T0/1-473 KIIKRANEMN VSPASLANLY EEDFKQDMAA LKVLPPTVYL RVTENIPQII BACU017412/1-687 KIIKRANEMN VSPASLANLY EEDFKQDMAA LKVLPPTVYL RVTENIPQII 401 450 ENSP00000257347/1-564 SFIEGIIARG NAYSTAKGNV YFDLKSRGDK YGKLVGVVPG PVGEPADSDK ENSTTRP00000010348/1-487 AFIERIIANG HAYSTPKGNV YFDLQSRGDR YGKLVGVAPA PVGETDHSDK ENSBTAP00000015242/1-555 AFIERLIANG HAYCTAKGNV YFDLQSRGDR YGKLVGVAPG PVGEPVDSDK bmy_03974T0/1-473 AFIERIIANG HAYSTPKGNV YFDLQSRGDR YGKLVGVAPA PVGDTGHSDK BACU017412/1-687 AFIERIIANG HAYSTAKGNV YFDLQSRGDR YGKLVGVAPA PVGETGHSDK 451 500 ENSP00000257347/1-564 RHASDFALWK AAKPQEVFWA SPWGPGRPGW HIECSAIASM VFGSQLDIHS ENSTTRP00000010348/1-487 RHASDFALWK AAKPREPSWA SPWGDGRPGW HIECSTIAXX XXXXXXXXXX ENSBTAP00000015242/1-555 RHTSDFALWK AAKPQEPFWG SPWGDGRPGW HIECSTIASL VFGSQLDIHS bmy_03974T0/1-473 RHASDFALWK AAKPREPSWA SPWGDGRPGW HTECSTIASL VFGSRLDIHS BACU017412/1-687 RHASDFALWK AAKPREPSWA SPWGAGRPGW HTECSTIASL VFGSRLDIHS 501 550 ENSP00000257347/1-564 GGIDLAFPHH ENEIAQCEVF HQCEQWGNYF LHSGHLHAKG KEEKMSKSLK ENSTTRP00000010348/1-487 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXHLHVKG KEEKMSKSLK ENSBTAP00000015242/1-555 GGVDLAFPHH ENEIAQCEAF HQCPQWGNYF LHSGHLHVKG GGEKMSKSLK bmy_03974T0/1-473 GGIDLAFPHH ENEIAQCEVF HQCQQWGNYF LHSGHLHMKG KEEKMSKSLK BACU017412/1-687 GGIDLAFPHH ENEIAQCEVF HQCQQWGNYF LHSGHLHVKG KEEKMSKSLK 551 600 ENSP00000257347/1-564 NYITIKDFLK TFSPDVFRFF CLRSSYRSAI DYSDSAMLQA QQLLLGLGSF ENSTTRP00000010348/1-487 NYITIKDFLS TASPDVFRLF CLRSSYRSAM DYSDGAMLEA RRLLRAVAAF ENSBTAP00000015242/1-555 NYVTIKDFLR STSPDVFRLF CLRSSYRSAI DYSEGALLEA RSLLRATAAF bmy_03974T0/1-473 NYITIKDFLS TASPDVFRLF CLRSSYRSAV DYSDGAMLEA RRLLRAVAAF BACU017412/1-687 NYITIKDFLS TASPDVFRLF CLRSSYRS-- --------EH RPQPR----- 601 650 ENSP00000257347/1-564 LEDARAYMKG QLACGSVREA MLWERLSSTK RAVKAALADD FDTPRVVDAI ENSTTRP00000010348/1-487 VEDARAYMRG QLAGGPVQED VLWERLGHTK GAVQAALADD FNTPGAVDAV ENSBTAP00000015242/1-555 VEDARAYLRG QLAGGPIQED VLWERLGRTK AAVQAALADD FDTVRAVDAV bmy_03974T0/1-473 VEDARAYMRG QLAGGPVQED VLWERLGRTK GAVQAALADD FDTPGAVDAV BACU017412/1-687 ---------- --AGAPASQG CAGLR-PRPL GA-------- -DLPGVGALA 651 700 ENSP00000257347/1-564 LGLAHHGNGQ LRASLKEPEG PRSPAVFGAI ISYFEQFFET VGISLANQQY ENSTTRP00000010348/1-487 MDLAHHGNRQ LKAAAEAAGG PRSPAVFGAV VSYVEQFFET VGISLAERQC ENSBTAP00000015242/1-555 MDLVHHGNRQ LKAASEEPRG PRSPAVLGAV VASVEHFFET VGVSLAERQC bmy_03974T0/1-473 TDLAHHGNRQ LKAAAEAAGG PRSPAVFGAI VSYVEQFFET VGISLAERQV BACU017412/1-687 FQEPSPGD-- ---LSQAAGG PRSPAVFGAI VSYVEQFFET VGISLAERQT 701 750 ENSP00000257347/1-564 -VSGDGSEAT LHGVVDELVR FRQKVRQFAL AMPEATGDAR RQQLLERQPL ENSTTRP00000010348/1-487 -VSGAGGPAA LHSVVEELVR FRQKVRQFAL AAREAPGEAQ RQ-LLERQPL ENSBTAP00000015242/1-555 -VPGAGSPAA LHSLVEELVC FRLKVRQFAL ASGEAPGEAR RQRLLERQPL bmy_03974T0/1-473 -RPSPFSP-- ---------- ---------- ---------- ---------- BACU017412/1-687 FENERWDP-- ---------- ---------- -----PQEDY RRRGTSRKQ- 751 800 ENSP00000257347/1-564 LEACDTLRRG LTAHGINIKD RSSTTSTWEL LDQRTKDQKS AG ENSTTRP00000010348/1-487 LEACDALRRD LAAHGVSIKD RGG-VSTWEL LDPRTEDPKP GS ENSBTAP00000015242/1-555 LEACDALRRD LAVHGISIKD RSG-SSTWEL LDPRTEDPKP RS bmy_03974T0/1-473 ---------- ---------- ---------- ---------- -- BACU017412/1-687 ---------- ---------- ---------- -KNRTAKAQD HS