KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:55:05 2014 Check: 00 .. Name: ENSP00000359219/1-304 Len: 313 Check: 9268 Weight: 1.00 Name: ENSBTAP00000015268/1-312 Len: 313 Check: 3122 Weight: 1.00 Name: BACU012389/1-305 Len: 313 Check: 9183 Weight: 1.00 Name: bmy_17588T0/1-305 Len: 313 Check: 9123 Weight: 1.00 Name: ENSTTRP00000014349/1-181 Len: 313 Check: 2339 Weight: 1.00 // 1 50 ENSP00000359219/1-304 ------MLPP PRPAAALALP V---LLLLLV VLTPPPTGAR PSPGPDYLRR ENSBTAP00000015268/1-312 SALGFQLIMP QPPAAALALP V-LLLLLLLV VRTPPPTGAR PSPGPDYLRR BACU012389/1-305 --------MP QPPAAALPLP VLLLLLLLLV VRTPSPAGAR PSLGPDYLRR bmy_17588T0/1-305 --------MP QPPAAAFPLP VLLLLLLLLV VRTPSPAGAR PSLGPDYLRR ENSTTRP00000014349/1-181 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000359219/1-304 GWMRLLAEGE GCAPCRPEEC AAPRGCLAGR VRDACGCCWE CANLEGQLCD ENSBTAP00000015268/1-312 GWLRLLAEGE GCAPCRPEEC AAPRGCLAGR VRDACGCCWE CANLEGQLCD BACU012389/1-305 GWLRLLAEGE GCAPCRPEEC ASPRGCLAGR VRDACGCCWE CANLEGQLCD bmy_17588T0/1-305 GWLRLLAEGE GCAPCRPEEC ASPRGCLAGR VRDACGCCWE CANLEGQLCD ENSTTRP00000014349/1-181 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000359219/1-304 LDPSAHFYGH CGEQLECRLD TGGDLSRGEV PEPLCACRSQ SPLCGSDGHT ENSBTAP00000015268/1-312 LDPSAHFYGR CGEQLECRLD AGGDLSRGEV PEPLCVCRSQ RPLCGSDGRT BACU012389/1-305 LDPSAHFYGR CGEQLECQLD AGGDLSRGEV PEPLCACRSQ RPLCGSDGRT bmy_17588T0/1-305 LDPSAHFYGR CGEQLECQLD AGGDLSRGEV PEPLCACRSQ RPLCGSDGRT ENSTTRP00000014349/1-181 ---------- ---------- ---------- -EPLCACRSQ RPLCGSDGR- 151 200 ENSP00000359219/1-304 YSQICRLQEA ARARPDANLT VAHPGPCESG PQIVSHPYDT WNVTGQDVIF ENSBTAP00000015268/1-312 YAQICRLQEA ARARPDANLT VAHPGPCETA PQILLHPYDV WNVTGQDVIF BACU012389/1-305 YAQICRLQEA ARARPDANLT VAHPGPCESE PQIVSHPYDI WNVTGQDVIF bmy_17588T0/1-305 YAQICRLQEA ARARPDANLT VAHPGPCESE PQIVSHPYDI WNVTGQDVIF ENSTTRP00000014349/1-181 YAQICRLQEA ARARPDANLT VAHPGPCESE PQIVSHPYDI WNVTGQDVIF 201 250 ENSP00000359219/1-304 GCEVFAYPMA SIEWRKDGLD IQLPGDDPHI SVQFRGGPQR FEVTGWLQIQ ENSBTAP00000015268/1-312 GCEVFAYPMA SIEWRKDGLD IQLPGDDPHI SVQFRGGPQR FEVTGWLQIQ BACU012389/1-305 GCEVFAYPMA SIEWRKDGLD IQLPGDDPHI SVQFRGGPQR FEVTGWLQIQ bmy_17588T0/1-305 GCEVFAYPMA SIEWRKDGLD IQLPGDDPHI SVQFRGGPQR FEVTGWLQIQ ENSTTRP00000014349/1-181 GCEVFAYPMA SIEWRKDGLD IQLPGDDPHI SVQFRGGPQR FEVTGWLQIQ 251 300 ENSP00000359219/1-304 AVRPSDEGTY RCLGRNALGQ VEAPASLTVL TPDQLNSTGI PQLRSLNLVP ENSBTAP00000015268/1-312 AVRPSDEGTY RCLARNALGQ VEAPASLTVL TPDQLNSTGI PQLLSLHLAP BACU012389/1-305 AVRPSDEGIY RCLARNALGQ VEAPASLTVL TLDQLNSTGI PQLSFLHLFP bmy_17588T0/1-305 AVRPSDEGIY RCLARNALGQ VEAPASLTVL TLDQLNSTGI PQLSFLHLFP ENSTTRP00000014349/1-181 AVRPSDEGIY RCLARNALGQ VEAPASLTVL TLDQLNSTGI PQLSFLHLFP 301 350 ENSP00000359219/1-304 EEEAESEEND DYY ENSBTAP00000015268/1-312 EEEAESEEGE DYY BACU012389/1-305 EKEAESEEAE DYY bmy_17588T0/1-305 EKEAESEEAE DYY ENSTTRP00000014349/1-181 EKEAESEEAE DYY