KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:55:06 2014 Check: 00 .. Name: bmy_18908T0/1-244 Len: 515 Check: 4843 Weight: 1.00 Name: ENSTTRP00000002915/1-397 Len: 515 Check: 3714 Weight: 1.00 Name: BACU002678/1-458 Len: 515 Check: 5699 Weight: 1.00 Name: ENSP00000261448/1-399 Len: 515 Check: 2945 Weight: 1.00 Name: ENSBTAP00000015285/1-431 Len: 515 Check: 8518 Weight: 1.00 // 1 50 bmy_18908T0/1-244 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002915/1-397 ---------- ---------- ---------- -MKRTHLF-- VVAVYL---- BACU002678/1-458 MRFKSCANDL NGTLCVLHRT GVSSEPQQVP PFSLSSLFQN TIGIFIEWGR ENSP00000261448/1-399 ---------- ---------- ---------- -MKRTHLF-- IVGIYF---- ENSBTAP00000015285/1-431 -----MTPSK SSKAPFTFLP SAFLGKKHFA QMKRAHLF-- VVGVYL---- 51 100 bmy_18908T0/1-244 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002915/1-397 LSSCR----- ---------- ---------- ---------- ---------- BACU002678/1-458 ISWCQQRSAV SRGRRRGNVT PGGLGSWSAF RGERVTLHPS PSDRQSHGDT ENSP00000261448/1-399 LSSCR----- ---------- ---------- ---------- ---------- ENSBTAP00000015285/1-431 LSSCR----- ---------- ---------- ---------- ---------- 101 150 bmy_18908T0/1-244 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002915/1-397 ---------- ---------- ------AEEG LNFPTYDGKD RVVSLTEKNF BACU002678/1-458 VQRAARERQV QNVKSTWGSG WSPGQQAEEG LNFPTYDGKD RVVSLTEKNF ENSP00000261448/1-399 ---------- ---------- ------AEEG LNFPTYDGKD RVVSLSEKNF ENSBTAP00000015285/1-431 ---------- ---------- ------AEEG LNFPTYDGKD RVVSLTEKNF 151 200 bmy_18908T0/1-244 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002915/1-397 KQVLKKYDLL CLYYHEPVSS DKVAQKQFQL KEIVLEXXXX XXXXXXXXXX BACU002678/1-458 KQVLKKYDLL CLYYHEPVSS DKAAQKQFQM KEIVLELVAQ VLEHKDIGFV ENSP00000261448/1-399 KQVLKKYDLL CLYYHEPVSS DKVTQKQFQL KEIVLELVAQ VLEHKAIGFV ENSBTAP00000015285/1-431 KQVLKKYDLL CLYYHEPLSS DKVVQKQFQL KEIVLELVAQ VLEHKDIGFV 201 250 bmy_18908T0/1-244 MVDAKKEAKL AKKLGFDEEG SLYVLKGDRT IEFDGEFAAD VLVEFLLDLI ENSTTRP00000002915/1-397 XXXXXXXXXX XXXXXFDEEG SLYVLKGDRT IEFDGEFAAD VLVEFLLDLI BACU002678/1-458 MVDAKKEAKL AKKLGFDEEG SLYVLKGDRT IEFDGEFAAD VLVEFLLDLI ENSP00000261448/1-399 MVDAKKEAKL AKKLGFDEEG SLYILKGDRT IEFDGEFAAD VLVEFLLDLI ENSBTAP00000015285/1-431 MVDAKKEAKL AKKLGFDEEG SLYILKGDRT IEFDGEFAAD VLVEFLLDLI 251 300 bmy_18908T0/1-244 EDPVEIINSK LEVQAFERIE DRIKLIGFFK SEDSEYYKAF EEAAEHFQPY ENSTTRP00000002915/1-397 EDPVEIINSK LEVQAFERIE DHIKLIGFFK SEDSEYYKAF EEAAEHFQPY BACU002678/1-458 EDPVEIINSK LEVQAFERIE DHIKLIGFFK SEDSEYYKAF EEAAEHFQPY ENSP00000261448/1-399 EDPVEIISSK LEVQAFERIE DYIKLIGFFK SEDSEYYKAF EEAAEHFQPY ENSBTAP00000015285/1-431 EDPVEIINSK LEVQAFERIE DHIKLIGFFK SEESEHYKAF EEAAEHFQPY 301 350 bmy_18908T0/1-244 IKFFATFDKG VAKKLSLKMN EVDFYEPFMD EPIAIPDKPY TEEELVEFVK ENSTTRP00000002915/1-397 IKFFATFDKG VAKKLSLKMN EVDFYEPFMD EPIAIPDKPY TEEELVEFVK BACU002678/1-458 IKFFATFDKG VAKKLSLKMN EVDFYEPFMD EPIAIPDKPY TEEELVEFVK ENSP00000261448/1-399 IKFFATFDKG VAKKLSLKMN EVDFYEPFMD EPIAIPNKPY TEEELVEFVK ENSBTAP00000015285/1-431 IKFFATFDKG VAKKLSLKMN EVDFYEPFMD EPIAIPDKPY TEEELVEFVK 351 400 bmy_18908T0/1-244 EHHRCPR--- --------WH AGVGAGGIQG LGDGEKP--- ----LSPTIS ENSTTRP00000002915/1-397 EHQRPTLRRL RPEDMFETWE DDLNGIHIVA FAERSDPDGY EFLEILKQVA BACU002678/1-458 EHQRPTLRRL RPEDMFETWE DDLNGIHIVA FAERSDPDGY EFLEILKQVA ENSP00000261448/1-399 EHQRPTLRRL RPEEMFETWE DDLNGIHIVA FAEKSDPDGY EFLEILKQVA ENSBTAP00000015285/1-431 EHQRPTLRRL RPEDMFETWE DDLNGIHIVA FAERSDPDGY EFLEILKQVA 401 450 bmy_18908T0/1-244 DPQGQHPGVS N----PAELN SVVWLCW--- ---------- ---------- ENSTTRP00000002915/1-397 RDNTDNPDLS IVWIDPDDFP LLV-AYWEKT FKIDLFKPQI GVVNVTDADS BACU002678/1-458 RDNTDNPDLS IVWIDPDDFP LLV-AYWEKT FKIDLFKPQI GVVNVT---- ENSP00000261448/1-399 RDNTDNPDLS ILWIDPDDFP LLV-AYWEKT FKIDLFRPQI GVVNVTDADS ENSBTAP00000015285/1-431 RDNTDNPDLS IVWIDPDDFP LLV-AYWEKT FKIDLFKPQI GVVNVTDADS 451 500 bmy_18908T0/1-244 ---------- ---------- --SLISGKDV AIFSEYGSTL ANKEDDLNGI ENSTTRP00000002915/1-397 VWMEIPDGDD LPTAEELEDW IEDVLSGKIN TEDDD----- --DDDDDNDN BACU002678/1-458 ---------- ---------- --DVIFKRVS KLFQE----- ---------- ENSP00000261448/1-399 VWMEIPDDDD LPTAEELEDW IEDVLSGKIN TEDDD----- --EDDDDDDN ENSBTAP00000015285/1-431 VWMDIPDDDD LPTAEELEDW IEDVLSGKIN TEDDDNDDEE DEDDDDDDDN 501 550 bmy_18908T0/1-244 HIVAFAERSD P---- ENSTTRP00000002915/1-397 SDEEDDDSDD DED-- BACU002678/1-458 ---------- ----- ENSP00000261448/1-399 SDEEDNDDSD DDDDE ENSBTAP00000015285/1-431 SDEEDNDDSD DDDE-