KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:55:06 2014 Check: 00 .. Name: ENSP00000460971/1-745 Len: 755 Check: 7498 Weight: 1.00 Name: ENSBTAP00000015289/1-713 Len: 755 Check: 7594 Weight: 1.00 Name: ENSTTRP00000015589/1-742 Len: 755 Check: 6179 Weight: 1.00 Name: bmy_18871T0/1-709 Len: 755 Check: 4151 Weight: 1.00 Name: BACU013844/1-707 Len: 755 Check: 5946 Weight: 1.00 // 1 50 ENSP00000460971/1-745 MACRQRGGSW SPSGWFNAG- --------WS TYRSISLFFA LVTSGNSIDV ENSBTAP00000015289/1-713 MACRQRGDSG RPSSWFRAD- --------W- --RSFFLSFT LLTSVNSIDV ENSTTRP00000015589/1-742 MAYRQRGDSG RPSSWFSAD- --------WX XXXXXXXXXX XXXXXXXXXX bmy_18871T0/1-709 MACRQRGDSG RPSSWFSAD- --------WS TYRSFPLFFA LLTSVNSIRV BACU013844/1-707 MTVVNVQHS- ----WIGVDC LDVCTVSSLS SYRSFPLFFA LLTSVNSIRV 51 100 ENSP00000460971/1-745 SQLVNPAFPG TVTCDEREIT VEFPSSPGTK KWHASVVDPL GLDMPNCTYI ENSBTAP00000015289/1-713 NQL-DPAFPG TVTCYENRMV VEFKRTLGNK IQHASVVDSL GLKMLNCTYV ENSTTRP00000015589/1-742 XXXXXXXXXX TVTCYENRMI VAFPSILANK IQHASVVDPL GLEMLNCTYV bmy_18871T0/1-709 NQLVDPAFPG TVTCYENRMI VEFQSILANK IQHASVVDPL GLEMLNCTYV BACU013844/1-707 NQLVDPAFPG TVTCYENRMT VQFQSILANK IQHASVVDPL GLEMLNCTYV 101 150 ENSP00000460971/1-745 LDPEKLTLRA TYDNCTRRVH GGHQMTIRVM NNSAALRHGA VMYQFFCPAM ENSBTAP00000015289/1-713 LDPEKLTLKA PYESCTKRVL GQHQMTITFM NDNTAHRQKT VLYHVSCPVM ENSTTRP00000015589/1-742 LDPEKLTLKA PYETCTKRVL GQHQMTIKLM DDNAALRQEA LMYDISCPVM bmy_18871T0/1-709 LDPEKLTLKA PYETCTKRVL GQHQMTIRLM DDNAALRQEA FMYDISCPVM BACU013844/1-707 LDPEKLTLKA PYETCTKRVL GQHQMTIRLM DDTAALRQEA FMYDISCPVM 151 200 ENSP00000460971/1-745 QVEETQGLSA STICQKDFMS FSLPRVFSGL ADDSKGTKVQ MGWSIEVGDG ENSBTAP00000015289/1-713 QAGRHDQHSG STICSKDFMS FTF-HFFPGL ADDTAGPKPQ MGWTVTVGDG ENSTTRP00000015589/1-742 QAESPEQHLG STVCLKDFMS F---TSFPGM ADESGDPKPQ MGWTFAVGDG bmy_18871T0/1-709 QAESHEQHSG STFT------ F---HFFPGM ADESADPKPQ MGWTFAVGDG BACU013844/1-707 QAESHEQHSG STVCLKDFMS ---------- -----DPKPQ MGWTFAVGDG 201 250 ENSP00000460971/1-745 ARAKTLTLPE AMKEGFSLLI DNHRMTFHVP FNATGVTHYV QGNSHLYMVS ENSBTAP00000015289/1-713 ERAQNLTLQE ALTQGYNLLI ENQKMSIQVL FHATGVTHYS QGNSHLYMVP ENSTTRP00000015589/1-742 ERAQTLTLQE AMTQGYNLLI DNQKISVQVS FHATGVTRYS QGNSHLYMVP bmy_18871T0/1-709 ERAQTLTLQE AMTQGYNLLI DNQKIXVQVS FHATGVTHYS QGNSHLYMVP BACU013844/1-707 ERAQTLTLQE AMTQGYNLLI DNQKISVQVS FHATGVTHYS QGNSHLYMVP 251 300 ENSP00000460971/1-745 LKLTFISPGQ KVIFSSQAIC APDPVTCNAT HMTLTIPEFP GKLKSVSFEN ENSBTAP00000015289/1-713 LKLTHVSPGQ TIILSSRLLC ASDPVTCNAT HMTLTIPEFP GKLKSVSFEN ENSTTRP00000015589/1-742 LKLTHVSPGQ TIVLSSRLIC VSDPVTCNAT HMTLTIPEFP GTLKSMSFEN bmy_18871T0/1-709 LKLTHVSPGQ TIVLSSRLIC VSDPVTCNAT HMTLTIPEFP GKLKSMSFEN BACU013844/1-707 LKLTHVSPGQ TIVLSSRLIC VSDPVTCNAT HMTLTIPEFP GKLKSMSFEN 301 350 ENSP00000460971/1-745 QNIDVSQLHD NGIDLEATNG MKLHFSKTLL KTKLSEKCLL HQFYLASLKL ENSBTAP00000015289/1-713 KNIAVNQLHN SGIVMEIANG LRLHFSKTLL KTKFSEKCLP YQFYLSSLKL ENSTTRP00000015589/1-742 RNIAVSQLNN SGVDAETTNG LRLHFSKTLL KTKFSEKCLP YQFYLSSLKL bmy_18871T0/1-709 RNIAVSQLHN SGVDMETTNG LRLHFSKTLL RTKFSEKCLP YQFYLSSLKL BACU013844/1-707 RNIAVSQLHD SGVDMETTNG LRLHFSKTLL KTKFSEKCLP YQFYLSSLKL 351 400 ENSP00000460971/1-745 TFLLRPETVS MVIYPECLCE SPVSIVTGEL CTQDGFMDVE VYSYQTQPAL ENSBTAP00000015289/1-713 TFYTQLETVS MVIYPECVCE STVSIVSGEL CTQDGFMDVE VYHHQTKPAL ENSTTRP00000015589/1-742 TFYIQLEMVS MVIYPECLCE SAVSIVSGEL CTQDGFMDIE VYSHQTKPAL bmy_18871T0/1-709 TFYIQLEMVS MVIYPECLCE PTVSIVSGEL CTQDGFMDFE VYSHQTKPAL BACU013844/1-707 TFYIQLEMVS MVIYPECLCE STVSIVSGEL CTQDGFMDVE VYSHQTKPAL 401 450 ENSP00000460971/1-745 DLGTLRVGNS SCQPVFEAQS QGLVRFHIPL NGCGTRYKFE DDKVVYENEI ENSBTAP00000015289/1-713 NLDTLRVGDS SCQPTIKAPF QGLVKFHIPL NGCGTRHKFE NGKVIYENEI ENSTTRP00000015589/1-742 DLDTLRVGDS SCQPIFKAPS RGLVQFHIPL NGCGTRHKFK NDKVIYENEI bmy_18871T0/1-709 NLDTLRVGDS SCQPTFKAPS QGLVRFHIPL NGCGTRHKFK NDKVIYENEI BACU013844/1-707 NLDTLRVGDS SCQPIFKAPS QGLVRFHIPL NGCGTRHKFK NDRVIYENEI 451 500 ENSP00000460971/1-745 HALWTDFPPS KISRDSEFRM TVKCSYSRND MLLNINVESL TPPVASVKLG ENSBTAP00000015289/1-713 HALWADLPPS TISRDSEFRM TVRCYYSSSN MLINTNVESL PPPVASVKPG ENSTTRP00000015589/1-742 HAFWADLPPR TVSRDSEFRM TVRCYYSSSN MLINTSVESL PPPMASVKPG bmy_18871T0/1-709 HAFWADLPPS TVSRDSEFRM TVRCYYSSSN MLINTSVESL PPPMASVKPG BACU013844/1-707 HAFWADLPPS TVSRDSEFRM TVRCYYSSSN MLINTSVESL PPPMASVEPG 501 550 ENSP00000460971/1-745 PFTLILQSYP DNSYQQPYGE NEYPLVRFLR QPIYMEVRVL NRDDPNIKLV ENSBTAP00000015289/1-713 PLALTLQTYP DNSYLQPYGD KDYPVVRYLR QPIYLEVRVL NRTDPNIKLV ENSTTRP00000015589/1-742 PLALTLQTYP DNSYLQPYGE KEYPVVRYLR QPIYLEVRVI NRTDPNIKLV bmy_18871T0/1-709 PLALTLQTYP DNSYLQPYGD KEYPVVRYLR QPIYLEVRVI NRTDPNIKLV BACU013844/1-707 PLALTLQTYP DNSYLQPYAD KEYPVVRYLR QPIYLEVRVI NRTDPNIKLV 551 600 ENSP00000460971/1-745 LDDCWATSTM DPDSFPQWNV VVDGCAYDLD NYQTTFHPVG SSVTHPDHYQ ENSBTAP00000015289/1-713 LDDCWATSTM DPASLPQWNI IVDGCEYNLD NHRTTFHPVG SSVAYPNHYQ ENSTTRP00000015589/1-742 LDDCWATSTM DPASLPQWNI VVDGCEYNLD NHRTTFHPVG SSVTYPNHYQ bmy_18871T0/1-709 LDDCWATSTM DPASLPQWNI VVDGCEYNLD NHRTTFHPVG SSVTYPNHYQ BACU013844/1-707 LDHCWATSTM DPASLPQWNI VVHGCEYNLD NHRTTFHPVG SSVTYPNHYQ 601 650 ENSP00000460971/1-745 RFDMKAFAFV SEAHVLSSLV YFHCSALICN RLSPDSPLCS VTCPVSSRHR ENSBTAP00000015289/1-713 RFAVKTFAFV SEDPAFSHLV YFHCSALICD QLSSNFPLCS ASCLVSSRSR ENSTTRP00000015589/1-742 RFDVKTFAFV SEAQAFSHLV YFHCSASICN QLSPDFPLCS VTCLVSSRSR bmy_18871T0/1-709 RFDVKTFAFV SGAQGFSHLV YFHCSALICN QLTPDFPLCS VTCPVSSRSR BACU013844/1-707 RFDVKTFAFV SGAQGFSHLV YFHCSALICN QLSPDFPLCS VTCPVSSRSR 651 700 ENSP00000460971/1-745 RATGATEAEK MTVSLPGPIL LLSDDSSFRG VGSSDLKASG SSGEKSRSET ENSBTAP00000015289/1-713 RATGATEEEK MIVSLPGPIL LLSDGSS--- ---------- ---------- ENSTTRP00000015589/1-742 RATGATEEEK MIVSLPGPIL LLSDSSSLRG VSLSDLNAS- RSGNSCGSGE bmy_18871T0/1-709 RATGATEEEK MIVSLPGPIL LLSDSSS--- ---------- ---------- BACU013844/1-707 RATGATEEEK MIVSLPGPIL LLSDSSS--- ---------- ---------- 701 750 ENSP00000460971/1-745 GEEVGSRGAM DTKGHKTAGD VGSKAVAAVA AFAGVVATLG FIYYLYEKRT ENSBTAP00000015289/1-713 -----FRDAV DSKGHGTSGY AAFKTMVAVV ALAGVVATLS LISYLRKKRI ENSTTRP00000015589/1-742 GEEVGLRDAV DSKGHETAGY VAFQTMVAVV ALAGIVAILS LISYLHKKRT bmy_18871T0/1-709 -----LRDAV DSKGHETAGY VAFKTMVAVL ASAGIVATLS LISYLHKKRT BACU013844/1-707 -----LRDAV DSKGHETAGY VAFKTMVAVV ASAGTVATLS LISYLRKKRT 751 800 ENSP00000460971/1-745 VS-NH ENSBTAP00000015289/1-713 TVLNH ENSTTRP00000015589/1-742 IMLSH bmy_18871T0/1-709 IMLSH BACU013844/1-707 IMLSH