KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:55:08 2014 Check: 00 .. Name: ENSBTAP00000015297/1-504 Len: 542 Check: 9140 Weight: 1.00 Name: ENSTTRP00000001755/1-488 Len: 542 Check: 3275 Weight: 1.00 Name: bmy_22634T0/1-346 Len: 542 Check: 5651 Weight: 1.00 Name: BACU003901/1-532 Len: 542 Check: 5529 Weight: 1.00 // 1 50 ENSBTAP00000015297/1-504 MGNDYKKIVL LKGFQHINDK CFNMIKSLLA HDLKLTRKMQ DEYDRVKIAD ENSTTRP00000001755/1-488 MGSEFKRIVL LKGFQHIKDY QFSMIKSLLA RDLRLTSKMQ DDYDRIKIAD bmy_22634T0/1-346 MGNEFKRIVL LKGFQHISDY QFSVIKCLLA KDLKLTSKMQ NEYDRVKIAD BACU003901/1-532 MGNEFKRIVL LKGFQHISDY QFSVIKCLLA KDLRLTSKMQ DEYDRVKIAN 51 100 ENSBTAP00000015297/1-504 LMELKFRGPD CVDKLIELVK EIDEIKDLAK VLRKEKLKVI KKNKAKGATP ENSTTRP00000001755/1-488 LMEVRYPGAA CVEKLIDLIK DIEELKDLAK TLRKERLK-- ----AKEATP bmy_22634T0/1-346 LMEVKFRGPA CVDKLIDLVK DIEEIKDLAK TLKNEKLK-- ---------- BACU003901/1-532 LMEAKFRGPA CVDKLIELVK DIEEIKDLAK TLKNEKLKVI RRSRAKEATP 101 150 ENSBTAP00000015297/1-504 AQNQ--NTSS LGQSTSTANE ALGSESVKDT PVKKKKTTKT NESKRRKLTE ENSTTRP00000001755/1-488 AKKSKLNKPS PDQSTSTTDK ALGPES---- --QGKKTTKT NESKRMNLKK bmy_22634T0/1-346 ---------- ---------- ---------- ---------- ---------- BACU003901/1-532 VKKSKLNNPS PDQSTSTTNK ALGPESIKDT PVKEKKTTKT NESKRMNL-K 151 200 ENSBTAP00000015297/1-504 EQSQLPGSSV MSIESTKGLL QTPQMPPSKP SSSSSTKKKS DTATKPKDVK ENSTTRP00000001755/1-488 DQSQLPGLLV TSTESTESLP QTPQMLPPNP SSSSSTKKKN DIATKINDLK bmy_22634T0/1-346 ---------- ---------- ---------- ---------- ---------- BACU003901/1-532 EQSQLPGLLV TSTQSTESLP QTPQMLPPKP SSSSSTKKKN DIATKINDLK 201 250 ENSBTAP00000015297/1-504 RKIIPYNQSQ LPGTSATSLY PTENCLQTPQ KLPPTTSSSS STK------- ENSTTRP00000001755/1-488 RKTVSQKQSQ LPGTSATSKC PTGSSCQIP- --PPTPSSSF SVK------- bmy_22634T0/1-346 ---------- ---------- ---------- ---------- ---------- BACU003901/1-532 RKTVSQKQSQ LPGTSATSTC PTGSSCPVKS IPPPTPSSSF SVKEEENTYF 251 300 ENSBTAP00000015297/1-504 ---KYKDRFK TEINKKKKK- -KKKRKFPNR CISSIHR--- --RYPEKMTS ENSTTRP00000001755/1-488 ---RIEDTTN KTLDSKKKKL CPEQSQLPQC ANFSIIPNEG CLQTPQMLPP bmy_22634T0/1-346 -----EGTTN KTLTSKKREL CLEQSQLPQC ANPSIIPNEG CLQTPQMLPP BACU003901/1-532 WIQKIEDTTN KTLTSKKREL CLEQSQLLQC ANPSIIPNEA CLQTPQMLPP 301 350 ENSBTAP00000015297/1-504 VDSNWSHSLL SVLNSCTKKP RLKSVPKEAS REEGFQRGPK EVMVLKATEP ENSTTRP00000001755/1-488 TSSS------ ---SSSTKKP RLKAVPKEAS REEGFQRGPK EVMVLKATEP bmy_22634T0/1-346 TSSS------ ---SSSTKKP RLTAVPKEAS REEGFQRGPK EVMVLKATEP BACU003901/1-532 TSSS------ ---SSSTKKP RLKAVPKEAS REEGFQRGPK EVMVLKATEP 351 400 ENSBTAP00000015297/1-504 FTYDVIGGKR -MFHATVATE SQFFQVKIFN AALKEKFIPN KAIAISDYIG ENSTTRP00000001755/1-488 FTYDVREGER KMFHATVATE SQFFQVKVYH VDLKEKFIPK KIIAISDYFG bmy_22634T0/1-346 FTYAVREGER KMFHATVATE SQFFQVKVYH VDLKEKFIPK KIIAISDYFG BACU003901/1-532 FTYDVREGER KMFHATVATE SQFFQVKVYH ADLKEKFIPK KIIAISDYFG 401 450 ENSBTAP00000015297/1-504 RNGFLEVFNV ISVSDVKPDR KMEISKSLIQ KAKATPKISH LYLQDLGTFV ENSTTRP00000001755/1-488 RSGFLEVFNA SSVSDVNPDR KMEISKRLIQ KANATPKISH LYSQALGTFV bmy_22634T0/1-346 RNGFLEVFNA SSVSDVNPDR KMEISKSLIQ KANATPKISH LYSQALGTFV BACU003901/1-532 RNGFLEVFNA SSVSDVNPDR KMEISKRLIQ KANATPKISH LYSQALGTFV 451 500 ENSBTAP00000015297/1-504 NGVFVVHKKS VYNEFIYYEI KDDTGVMEVV VYGQRLTSVN CDEGDRLTLV ENSTTRP00000001755/1-488 NGVFLVHEKL VRNECIYYEI QDNTGVMEVL VYGERLTRIS CEKGDRLTLI bmy_22634T0/1-346 NGVFLVHKKL VCNECIYYEI QDNTGVMEVL VYGQRLTRIN CEKGDRLKLI BACU003901/1-532 NGVFLVHKKL VSNECIYYEI QDDTGVMEVL VYGQRLTKIN CEKGDRLKLI 501 550 ENSBTAP00000015297/1-504 CFELGESGPK RQLRSVIHSF IKVR------ ---------- -- ENSTTRP00000001755/1-488 CFELAVSGDK RQLRSIIHSF IK-------- ---------- -- bmy_22634T0/1-346 CFELALSGDK RQLRSIIHSF IK-------- ---------- -- BACU003901/1-532 CFELALSGDK RQLRSIIHSF IKVTKARKSK EQPFNPESYL ET