KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:55:10 2014 Check: 00 .. Name: bmy_16844T0/1-318 Len: 561 Check: 5022 Weight: 1.00 Name: ENSTTRP00000010329/1-522 Len: 561 Check: 9110 Weight: 1.00 Name: BACU004895/1-147 Len: 561 Check: 6017 Weight: 1.00 Name: ENSP00000332296/1-448 Len: 561 Check: 7385 Weight: 1.00 Name: ENSBTAP00000015305/1-446 Len: 561 Check: 8036 Weight: 1.00 // 1 50 bmy_16844T0/1-318 -----MHPRL APGHA----A VTALPGFQHN LALGPRQGGL FLRE------ ENSTTRP00000010329/1-522 MFDCMDVLSV SPGQMLDFYT ASPSSCMLQE KALKACFSGL TQTEWRQRHT BACU004895/1-147 MFDCMDVLSV SPGQILDFYT ASPSSCMLQE KALKACFSGL TQTEWQHRHT ENSP00000332296/1-448 MFDCMDVLSV SPGQILDFYT ASPSSCMLQE KALKACFSGL TQTEWQHRHT ENSBTAP00000015305/1-446 MFDCMDVLSV SPGRILDFYT ASPSSCMLQE KALKACFSGL TQTEWQHRHT 51 100 bmy_16844T0/1-318 ---------- ---------- PVPPGTRWRQ DPGLRGASSS LG-GPAAC-- ENSTTRP00000010329/1-522 AQXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU004895/1-147 AQSIETQSTS SEELVPSPPS PLPPPRVYKP CFVCQDKSSG YHYGVSACEG ENSP00000332296/1-448 AQSIETQSTS SEELVPSPPS PLPPPRVYKP CFVCQDKSSG YHYGVSACEG ENSBTAP00000015305/1-446 AQSIETQSTS SEELVPSPPS PLPPPRVYKP CFVCQDKSSG YHYGVSACEG 101 150 bmy_16844T0/1-318 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010329/1-522 XXGXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU004895/1-147 CKQ------- ---------- ---------- ---------- ---------- ENSP00000332296/1-448 CKGFFRRSIQ KNMIYTCHRD KNCVINKVTR NRCQYCRLQK CFEVGMSKES ENSBTAP00000015305/1-446 CKAFYRKSLG VDTVRPCARK KNCPYHSVDG HSC--CSMSD CYEHALSSAA 151 200 bmy_16844T0/1-318 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010329/1-522 VRNDRNKKKK EPSKQECTES YEMTAELDDL TEKIRKAHQE TFPSLCQLGK BACU004895/1-147 ---------- ---------- ---------- ---------- ---------- ENSP00000332296/1-448 VRNDRNKKKK ETSKQECTES YEMTAELDDL TEKIRKAHQE TFPSLCQLGK ENSBTAP00000015305/1-446 VRNDRNKKKK EPSKQECTES YEMTAELDDL TEKIRKAHQE TFPSLCQLGK 201 250 bmy_16844T0/1-318 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010329/1-522 YTTNSSADHR VRLDLGLWDK FSELATKCII KIVEFAKRLP GFTGLTIADQ BACU004895/1-147 ---------- ---------- ---------- ---------- ---------- ENSP00000332296/1-448 YTTNSSADHR VRLDLGLWDK FSELATKCII KIVEFAKRLP GFTGLTIADQ ENSBTAP00000015305/1-446 YTTNSSADHR VRLDLGLWDK FSELATKCII KIVEFAKRLP GFTGLTIADQ 251 300 bmy_16844T0/1-318 -----AVARS RVPVRKATAC RPRGTERSLR ---------- ---------- ENSTTRP00000010329/1-522 ITLLKAACLD ILILRICTRY TPEQDTMTFS DGLTLNRTQM HNAGFGPLTD BACU004895/1-147 ----KSVASA LIEVRMVQR- ---------- ---------- ---------- ENSP00000332296/1-448 ITLLKAACLD ILILRICTRY TPEQDTMTFS DGLTLNRTQM HNAGFGPLTD ENSBTAP00000015305/1-446 ITLLKAACLD ILILRICTRY TPEQDTMTFS DGLTLNRTQM HNAGFGPLTD 301 350 bmy_16844T0/1-318 ---------- ---------- ---------- DRQDLEEPTK VDKLQXPLLE ENSTTRP00000010329/1-522 LVFTFAGQLL PLEMDDTETG LLSAICLICG DRQDLEEPTK VDKLQEPLLE BACU004895/1-147 ---------- ---------- ---------- ---------- KHRLSEACFG ENSP00000332296/1-448 LVFTFANQLL PLEMDDTETG LLSAICLICG DRQDLEEPTK VDKLQEPLLE ENSBTAP00000015305/1-446 LVFTFAGQLL PLEMDDAETG LLSAICLICG DRQDLEEPTK VDKLQEPLLE 351 400 bmy_16844T0/1-318 ALKIYIRKRR PSKPHMFPKI LMKITDLRSI SAKGAERVIT LKMEIPGSMP ENSTTRP00000010329/1-522 ALKIYIRKRR PSKPHMFPKI LMKITDLRSI SAKGAERVIT LKMEIPGSMP BACU004895/1-147 SMG----KKK PK-PR----- ---------- ---------- ---------- ENSP00000332296/1-448 ALKIYIRKRR PSKPHMFPKI LMKITDLRSI SAKGAERVIT LKMEIPGSMP ENSBTAP00000015305/1-446 ALKIYIRKRR PSKPHMFPKI LMKITDLRSI SAKGAERVIT LKMEIPGSMP 401 450 bmy_16844T0/1-318 PLIQEMLENS EGHEPLTPSS SGDTAERSPS ASPGSVENSG VDTKVMEQIT ENSTTRP00000010329/1-522 PLI-EMLENS EGHEPLTPSS SGNTAEHSPS TSPSSVTAVS VSHHCCNK-T BACU004895/1-147 -------DKG QGDWRM---- ---------- ---------- ---------- ENSP00000332296/1-448 PLIQEMLENS EGHEPLTPSS SGNTAEHSPS ISPSSVENSG VSQSPLVQ-- ENSBTAP00000015305/1-446 PLIQEMLENS EGHEPLTPSS GGHTAEPSPS VSPSSVEHSG VGQSPLLQ-- 451 500 bmy_16844T0/1-318 VHVQLRKGQK DNCLAFADQD IEVCSLQSIM TIKICANAQQ SITILQANQT ENSTTRP00000010329/1-522 LSSHFQHSPV PSLLGFKMQE KTFLLLLSFW TENIFKLKKD QEVFVCIVYT BACU004895/1-147 ---------- ---------- ---------- ---------- ---------- ENSP00000332296/1-448 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015305/1-446 ---------- ---------- ---------- ---------- ---------- 501 550 bmy_16844T0/1-318 VHDISMSKKE HKTPDRSVAE KKNTHAPSTE NAIGIRYAAL EVRPLVGTAG ENSTTRP00000010329/1-522 PHCLTYLEVQ TFIKNQLFRA TQNQ------ ---------- ---------- BACU004895/1-147 ---------- ---------- ---------- ---------- ---------- ENSP00000332296/1-448 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015305/1-446 ---------- ---------- ---------- ---------- ---------- 551 600 bmy_16844T0/1-318 EARRLCGLSY R ENSTTRP00000010329/1-522 ---------- - BACU004895/1-147 ---------- - ENSP00000332296/1-448 ---------- - ENSBTAP00000015305/1-446 ---------- -