KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:55:11 2014 Check: 00 .. Name: bmy_22059T0/1-384 Len: 611 Check: 2554 Weight: 1.00 Name: ENSTTRP00000016296/1-611 Len: 611 Check: 4464 Weight: 1.00 Name: ENSP00000445340/1-610 Len: 611 Check: 6459 Weight: 1.00 Name: ENSBTAP00000015315/1-611 Len: 611 Check: 4679 Weight: 1.00 Name: BACU000934/1-611 Len: 611 Check: 6738 Weight: 1.00 // 1 50 bmy_22059T0/1-384 MAATRGIGTF VVWDYVVFAG MLLISAVIGI YYAFVGGGQK TSKDFLMGGR ENSTTRP00000016296/1-611 MVSPRGIGTF VVWDYLVFAG MLLISAAIGI YYAFAGGGQQ TSRDFLMGGR ENSP00000445340/1-610 MDTPRGIGTF VVWDYVVFAG MLVISAAIGI YYAFAGGGQQ TSKDFLMGGR ENSBTAP00000015315/1-611 MGAPRDIGTF VVWDYVVFAG MLLISAVIGI YYAFAGGGQQ TSKDFLMGGR BACU000934/1-611 MASTRVIGTF VVWDYVVFAG MLLISAVIGI YYAFAGRGQK TSKDFLMGGR 51 100 bmy_22059T0/1-384 RMTAVPVAMS LTASFMSAVT VLGTPSEVYR FGAIFSIFAI TYFFVVVLSA ENSTTRP00000016296/1-611 SMTAVPVAMS LTASFMSAVT VLGTPSEVYR FGAIFSIFAI TYFFVVVLSA ENSP00000445340/1-610 RMTAVPVALS LTASFMSAVT VLGTPSEVYR FGAIFSIFAF TYFFVVVISA ENSBTAP00000015315/1-611 RMTAVPVALS LTASFMSAVT VLGTPSEVYR FGAIFSIFAI TYFLVVVLSA BACU000934/1-611 RMTAVPVAMS LTASFMSAVT VLGTPSEVYR FGAIFSIFAI TYFLVVALSA 101 150 bmy_22059T0/1-384 EVFLPVFYKL EITSTYEYLG LRFNKYVRLC GTILFIVQTI LYTGIVIYAP ENSTTRP00000016296/1-611 EVFLPVFYKL GITSTNEYLG LRFNKYVRLC GTILFIVQTI LYTGIVIYAP ENSP00000445340/1-610 EVFLPVFYKL GITSTYEYLE LRFNKCVRLC GTVLFIVQTI LYTGIVIYAP ENSBTAP00000015315/1-611 EVFLPVFYKL GITSTYEYLE LRFNKCVRLC GTILFIVQTI LYTGIVIYAP BACU000934/1-611 EVFLPVFYKL EITSTYEYLG LRFNKYVRLC GTILFIVQTI LYTGIVIYAP 151 200 bmy_22059T0/1-384 ALALNQVTGF DLWGAVVATG VVCTFYCTMQ PC-----SEI SKQKSLAKGK ENSTTRP00000016296/1-611 ALALNQVTGF NLWGAVVATG VVCTFYCTMG GLKAVIWTDV FQVGIMVAGF ENSP00000445340/1-610 ALALNQVTGF DLWGAVVATG VVCTFYCTLG GLKAVIWTDV FQVGIMVAGF ENSBTAP00000015315/1-611 ALALNQVTGF DLWGVVVATG VVCTFYCTMG GLKAVIWTDV FQVGIMVAGF BACU000934/1-611 ALALNQVTGF DLWGAVVATG VVCTFYCTMG GLKAVIWTDV FQVGIMVAGF 201 250 bmy_22059T0/1-384 KIILHLVALF Q------FSE ---------N SFNPNPLQRH TFWTIVIGGT ENSTTRP00000016296/1-611 ASLIIQAALI QGGIGTILND AYNGARLNFW NFNPNPLQRH TFWTIVIGGT ENSP00000445340/1-610 ASVIIQAVVM QGGISTILND AYDGGRLNFW NFNPNPLQRH TFWTIIIGGT ENSBTAP00000015315/1-611 TSVIIKAALI QGGISTIIND ASNGGRLNFW NFNPNPLQRH TFWTIIIGGT BACU000934/1-611 ASVIIQASLT QGGINIILND AYNGGRLNFW NFDPNPLQRH TFWTIVIGGT 251 300 bmy_22059T0/1-384 FTWTSIYGVN QSQVQRYISC KSRFQAKMSL YINLVALWLI LACTVLCGLT ENSTTRP00000016296/1-611 FTWTSVYGVN QSQVQRYISC KNRFQAKMSL YINLVALWLI LTCTVLCGLA ENSP00000445340/1-610 FTWTSIYGVN QSQVQRYISC KSRFQAKLSL YINLVGLWAI LTCSVFCGLA ENSBTAP00000015315/1-611 FTWTSIYGVN QSQVQRYISC KSRFQAKLSL YINLLGLWVI LVCSVLCGLA BACU000934/1-611 FTWTSVYGVN QSQVQRYISC KSRFQAKMSL YINLLALWLI LACTVLCGLS 301 350 bmy_22059T0/1-384 LYSRYHDCDP WTAKKVSAPD QLMPYLVLDI LQDYPGLPGL FVACAYSGTL ENSTTRP00000016296/1-611 LYSRYRDCDP WTAKKVSAPD QLMPYLALDI LQDYPGLPGL FVACAYSGTL ENSP00000445340/1-610 LYSRYHDCDP WTAKKVSAPD QLMPYLVLDI LQDYPGLPGL FVACAYSGTL ENSBTAP00000015315/1-611 LYSRYHDCDP WTAKKVSAPD QLMPYLVLDI LQDYPGLPGL FVACAYSGTL BACU000934/1-611 LYSRYHDCDP WTAKKVSAPD QLMPYLVLDI LQDYPGLPGL FVACAYSGTL 351 400 bmy_22059T0/1-384 STVSSSINAL AAVTVEDLVK PCFPSLSERS LFWISQGMSK FL-------- ENSTTRP00000016296/1-611 STVSSSINAL AAVTLEDLVK SRFQSLSERS LSWISQGMSV XXXXXXXXXX ENSP00000445340/1-610 STVSSSINAL AAVTVEDLIK PYFRSLSERS LSWISQGMSV VYGALCIGMA ENSBTAP00000015315/1-611 STVSSSINAL AAVTMEDLVK PRFPSLSEKS LSWLSQGMSV LFGALCIGMA BACU000934/1-611 STVSSSINAL AAVTVEDLVK PLFPSLSERS LFWISQGMSV LFGALCIGMA 401 450 bmy_22059T0/1-384 ---------- ---------- ---------- -----FHNSI LALG------ ENSTTRP00000016296/1-611 XXXXXXXXXX XAALSIFGMV GGPLLGLFAL GILVPFANSI GALVGLLAGF ENSP00000445340/1-610 ALASLMGALL QAALSVFGMV GGPLMGLFAL GILVPFANSI GALVGLMAGF ENSBTAP00000015315/1-611 ALASLMGALL QAALSIFGML GGPLMGLFSL GILVPFANSI GALGGLLAGF BACU000934/1-611 ALASLMGALL QAALSIFGMV GGPLLGVFAL GILVSFANSI GALVGLLAGF 451 500 bmy_22059T0/1-384 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016296/1-611 TISLWVGIGA QLYPPLPERT MPLSLETYGC NSTYNGTDWM TTTEVPFSTS ENSP00000445340/1-610 AISLWVGIGA QIYPPLPERT LPLHLDIQGC NSTYNETNLM TTTEMPFTTS ENSBTAP00000015315/1-611 AISLWVGIGA QLYPPLPERM MPLRLETHGC NSTYNGTNWM TTTEMPFSTS BACU000934/1-611 AISLWVGIGA QLYPPLPERT MPLSLETYGC NSTYNGTDWM TTTEMPSSTS 501 550 bmy_22059T0/1-384 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016296/1-611 AFQVYNVERT PLMDNWYSLS YLYFSTVGTL VTLFVGMLIS LSTGGRKQNI ENSP00000445340/1-610 VFQIYNVQRT PLMDNWYSLS YLYFSTVGTL VTLLVGILVS LSTGGRKQNL ENSBTAP00000015315/1-611 ASQVHNIERT PLMDNWYSLS YLYFSTVGTL VTLFVGMLIS LSTGGRKQNI BACU000934/1-611 AFQVYNIERT PLMDNWYSLS YLYFSTVGTL VTLFVGMLIS LPTGGRKQNI 551 600 bmy_22059T0/1-384 --------DD F--------- ---------- ---------- ---------- ENSTTRP00000016296/1-611 DPRFLLTKED FLSNFDIFKK KKQVLDYKSH PIEDDGTDNP GFNHIELNCT ENSP00000445340/1-610 DPRYILTKED FLSNFDIFKK KKHVLSYKSH PVEDGGTDNP AFNHIELN-S ENSBTAP00000015315/1-611 DCRFLLTKED FLSNFDIFKK KKQVLGYKSH PVEDGGTDNP AFNHIELNGT BACU000934/1-611 DRRFLLTKED FLSNFDIFKK KKQVLDYKPH PTEDGGTDNP GFNHVELNST 601 650 bmy_22059T0/1-384 ---------- - ENSTTRP00000016296/1-611 DQSGKINGTR L ENSP00000445340/1-610 DQSGKSNGTR L ENSBTAP00000015315/1-611 DQSSKISGTR L BACU000934/1-611 DQSGKTNGTR L