KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:55:19 2014 Check: 00 .. Name: ENSTTRP00000006272/1-1048 Len: 1182 Check: 8026 Weight: 1.00 Name: BACU006993/1-966 Len: 1182 Check: 7320 Weight: 1.00 Name: ENSP00000316426/1-1093 Len: 1182 Check: 4047 Weight: 1.00 Name: bmy_14035T0/1-1074 Len: 1182 Check: 7676 Weight: 1.00 Name: ENSBTAP00000015325/1-1095 Len: 1182 Check: 7905 Weight: 1.00 // 1 50 ENSTTRP00000006272/1-1048 ---------- ---------- ---------- -------CYG IVQVPTGPWF BACU006993/1-966 -------MYI CS-------- --------AS STGPH----- VPEVKSGP-- ENSP00000316426/1-1093 MKEMVGGCCV CSDERGWAEN PLVYCDGHAC SVVVHQACYG IVQVPTGPWF bmy_14035T0/1-1074 MKEMVGGCCV CSDERGWAEN PLVYCDGHAC SVAVHQACYG IVQVPTGPWF ENSBTAP00000015325/1-1095 MKEMVGGCCV CSDERGWAEN PLVYCDGHAC SVAVHQACYG IVQVPTGPWF 51 100 ENSTTRP00000006272/1-1048 CRKCESQERA ARVRCELCPH KDGALKRTDN GGWAHVVCAL YIPEVQFANV BACU006993/1-966 ---------- --QRCELCPH KDGALKRTDN GGWAHVVCAL YIPEVQFANV ENSP00000316426/1-1093 CRKCESQERA ARVRCELCPH KDGALKRTDN GGWAHVVCAL YIPEVQFANV bmy_14035T0/1-1074 CRKCESQERA ARVRCELCPH KDGALKRTDN GGWAHVVCAL YIPEVQFANV ENSBTAP00000015325/1-1095 CRKCESQERA ARVRCELCPH KDGALKRTDN GGWAHVVCAL YIPEVQFANV 101 150 ENSTTRP00000006272/1-1048 LTMEPIVLQY VPHDRFNKTC YICEEQGRES KAASGACMTC NRHGCRQAFH BACU006993/1-966 LTMEPIVLQY VPHDRFNKTC YICEEQGRES KAASGACMTC NRHGCRQAFH ENSP00000316426/1-1093 LTMEPIVLQY VPHDRFNKTC YICEEQGRES KAASGACMTC NRHGCRQAFH bmy_14035T0/1-1074 LTMEPIVLQY VPHDRFNKTC YICEEQGRES KAASGACMTC NRHGCRQAFH ENSBTAP00000015325/1-1095 LTMEPIVLQY VPHDRFNKTC YICEEQGRES KAASGACMTC NRHGCRQAFH 151 200 ENSTTRP00000006272/1-1048 VTCAQMAGML FEEEV-EVDN VKYCGYCKFH FSKMKTSRHA SGGG------ BACU006993/1-966 VTCAQMAGLL CEEEVLEVDN VKYCGYCKYH FSKMKTSRHT SGAG------ ENSP00000316426/1-1093 VTCAQMAGLL CEEEVLEVDN VKYCGYCKYH FSKMKTSRHS SGGGG--GGA bmy_14035T0/1-1074 VTCAQMAGLL CEEEVLEVDN ---------- ----KTSRHT SGGG------ ENSBTAP00000015325/1-1095 VTCAQMAGLL CEEEVLEVDN VKYCGYCKYH FSKMKTSRHS SGGGGGSGGT 201 250 ENSTTRP00000006272/1-1048 SGGGGGTGAG GSGFIAGRRS RSASPSTQQE KHPSHHERGQ KKSRKDKERL BACU006993/1-966 SGGGGGTGGG GSGFIAGRRS RSASPSTQQE KHPSHHERGQ KKSRKDKERL ENSP00000316426/1-1093 GGGGGSMGGG GSGFISGRRS RSASPSTQQE KHPTHHERGQ KKSRKDKERL bmy_14035T0/1-1074 SGGGGGTGGG GSGFIAGRRS RSASPSTQQE KHPSHHERGQ KKSRKDKERL ENSBTAP00000015325/1-1095 GGGGGSTGGG SSSFIAGRRS RSASPSAQQE KHPSHHERGQ KKSRKDKERL 251 300 ENSTTRP00000006272/1-1048 KQKHKKRPES PPSILTPPVV PTADKVSSSA SSSSHHEAST QETSESSRDS BACU006993/1-966 KQKHKKRPES PPSILTPPVV PTADKTEG-- ---------- ---------- ENSP00000316426/1-1093 KQKHKKRPES PPSILTPPVV PTADKVSSSA SSSSHHEAST QETSESSRES bmy_14035T0/1-1074 KQKHKKRPES PPSILTPPVV PTADKVSSSA PSSSHHEAST QETSESSRDS ENSBTAP00000015325/1-1095 KQKHKKRPES -PSILTPPVV PTADKVSSSA SSSSHHEAST QETSEGSRDS 301 350 ENSTTRP00000006272/1-1048 KGKKSSSHGL SHKGKKLSSG KGVSSFTSAS SSSSSSSSSS SGGPFQPAVS BACU006993/1-966 ---------- ------LSTG ---------- ---------- ----LLSAVS ENSP00000316426/1-1093 KGKKSSSHSL SHKGKKLSSG KGVSSFTSA- SSSSSSSSSS SGGPFQPAVS bmy_14035T0/1-1074 KGKKSSSHGL SHKGKKLSSG KGVSSFTSAS SSSSSSSSSS SGGPFQPAVS ENSBTAP00000015325/1-1095 KGKKSSSHSL SHKGKKLSSG KGVSCFTSAS SSSSSSSSSS SGGPFQPTVS 351 400 ENSTTRP00000006272/1-1048 SLQSSPDFSA FPKLEQPEED KYSKPAARPP SAPPSPSAPE PPKADLFEQK BACU006993/1-966 SLQSSPDFSA FPKLEQPEED KYSKPTAHPP SAPPSPSAPE PPKADLFEQK ENSP00000316426/1-1093 SLQSSPDFSA FPKLEQPEED KYSKPTAPAP SAPPSPSAPE PPKADLFEQK bmy_14035T0/1-1074 SLQSSPDFSA FPKLEQPEED KYSKPTAHPP SAPPSPSAPE PPKADLFEQK ENSBTAP00000015325/1-1095 SLQSSPDFSA FPKLEQPEDD KYSKPTAPPP SAPPSPSAPE PPKADLFEQK 401 450 ENSTTRP00000006272/1-1048 VVFSGFGPIM RFSTTTSSSG RARAPSPGDY KSPHVSGSGT SAGTHKRMPT BACU006993/1-966 VVFSGFGPIM RFSTTTSSSG RARAPSPGDY KSPHVSGSGA SAGTHKRMPT ENSP00000316426/1-1093 VVFSGFGPIM RFSTTTSSSG RARAPSPGDY KSPHVTGSGA SAGTHKRMPA bmy_14035T0/1-1074 VVFSGFGPIM RFSTTTSSSG RARAPSPGDY KSPHVSGPGA SAGTHKRMPT ENSBTAP00000015325/1-1095 VVFSGFGPIM RFSTTTSSSG RARAPSPGDY KSPHVSGSGA SGGTHKRMPT 451 500 ENSTTRP00000006272/1-1048 LSAAPVPVEE APETGLKEKK HKASKRSRHG PGRPKGSRNK EGTGGPALPS BACU006993/1-966 LSAAPVPAEE TPETGLKEKK HKASKRSRHG PGRPKGSRNK EGTGGPALPS ENSP00000316426/1-1093 LSATPVPADE TPETGLKEKK HKASKRSRHG PGRPKGSRNK EGTGGPAAPS bmy_14035T0/1-1074 LSAAPVPAEE TPETGLKEKK HKASKRSRHG PGRPKGSRSK EGTVGPALPS ENSBTAP00000015325/1-1095 LSATPVPAEE TPETGLKEKK HKASKKSRHG PGRPKGSRNK EGPGGPALPS 501 550 ENSTTRP00000006272/1-1048 LPGAQLAGFT ATAASPFSGG SLVSSGLGGL ASRTFGPSGS LPSLSLESPL BACU006993/1-966 LPGAQLAGFT ATAASPFSGG SLVSSGLGGL ASRTFGPSGS LPSLSLESPL ENSP00000316426/1-1093 LPSAQLAGFT ATAASPFSGG SLVSSGLGGL SSRTFGPSGS LPSLSLESPL bmy_14035T0/1-1074 LPGAQLAGFT ATAASPFSGG SLVSSGLGGL ASRTFGPSGS LPSLSLESPL ENSBTAP00000015325/1-1095 LPGAQLAGFT ATAASPFSGG SLVSSGLGGL ASRTFGPSGS LPSLSLESPL 551 600 ENSTTRP00000006272/1-1048 LGAGIYTSNK DPISHGGGML RAVCSTPLSS SLLGPPGTSA LPRLSRSPFT BACU006993/1-966 LGAGIYTSNK DPISHGGGML RAVCSTPLSS SLLGPPGTSA LPRLSRSPFT ENSP00000316426/1-1093 LGAGIYTSNK DPISHSGGML RAVCSTPLSS SLLGPPGTSA LPRLSRSPFT bmy_14035T0/1-1074 LGAGIYTSNK DPISHGGGML RAVCSTPLSS SLLGPPGTSA LPRLSRSPFT ENSBTAP00000015325/1-1095 LGAGIYTSNK DPISHGGGML RAVCSTPLSS SLLGPPGTSA LPRLSRSPFT 601 650 ENSTTRP00000006272/1-1048 STLPSSSASI STTQVFSLAG STFSLPSTHI FGTPMGAVNP LLTQAESSHT BACU006993/1-966 STLPSSSASI STTQVFSLAG STFSLPSTHI FGTPMGAVNP LLTQAESSHT ENSP00000316426/1-1093 STLPSSSASI STTQVFSLAG STFSLPSTHI FGTPMGAVNP LLSQAESSHT bmy_14035T0/1-1074 STLPSSSASI STTQVFSLAG STFSLPSTHI FGTPMGAVNP LLTQAESSHT ENSBTAP00000015325/1-1095 STLPSSSASI STTQVFSLAG STFSLPSTHI FGTPMGAVNP LLTQAESSHT 651 700 ENSTTRP00000006272/1-1048 EPDLEDCSFR CRGTSPQESL SSMSPISSLP ALFDQT--AP CGGGQLDPAA BACU006993/1-966 EPDLEDCSFR CRGTSPQESL SSMSPISSLP ALFDQT--AP CGGGQLDPAA ENSP00000316426/1-1093 EPDLEDCSFR CRGTSPQESL SSMSPISSLP ALFDQTASAP CGGGQLDPAA bmy_14035T0/1-1074 EPDLEDCSFR CRGTSPQESL SSMSPISSLP ALFDQT--AP CGGGQLDPAA ENSBTAP00000015325/1-1095 EPDLEDCSFR CRGTSPQESL SSMSPISSLP ALFDQTASAP CGGGQLDPAA 701 750 ENSTTRP00000006272/1-1048 PGTTNMEQLL EKQGDGEAGV NIVEMLKALH ALQKENQRLQ EQILSLTAKK BACU006993/1-966 PGTTNMEQLL EKQGDGEAGV NIVEMLKALH ALQKENQRLQ EQILSLTAKK ENSP00000316426/1-1093 PGTTNMEQLL EKQGDGEAGV NIVEMLKALH ALQKENQRLQ EQILSLTAKK bmy_14035T0/1-1074 PGTTNMEQLL EKQGDGEAGV NIVEMLKALH ALQKENQRLQ EQILSLTAKK ENSBTAP00000015325/1-1095 PGTTNMEQLL EKQGDGEAGV NIVEMLKALH ALQKENQRLQ EQILSLTAKK 751 800 ENSTTRP00000006272/1-1048 ERLQILNVQL SVPFAALPAA LPATNGPVPG PYGLPPQAGS SDSLSTSKSP BACU006993/1-966 ERLQILNVQL SVPFAALPAA LPATNGPVPG PYGLPPQAGS SDSLSTSKSP ENSP00000316426/1-1093 ERLQILNVQL SVPFPALPAA LPAANGPVPG PYGLPPQAGS SDSLSTSKSP bmy_14035T0/1-1074 ERLQILNVQL SVPFAALPAA LPATNGPVPG PYGLPPQAGS SDSLSTSKSP ENSBTAP00000015325/1-1095 ERLQILNVQL SVPFAALPAA LPATNGPVPG PYGLPPQAGS SDSLSTSKSP 801 850 ENSTTRP00000006272/1-1048 PGKNSLGLDN SLSTSSEDPH SGCPSRSSSS LSFHSTPPPL PLLQQNPATL BACU006993/1-966 PGKNSLGLDN SLSTSSE--- ---------- ---------- ---------- ENSP00000316426/1-1093 PGKSSLGLDN SLSTSSEDPH SGCPSRSSSS LSFHSTPPPL PLLQQSPATL bmy_14035T0/1-1074 PGKNSLGLDN SLSTSSEDPH SGCPSRSSSS LSFHSTPPPL PLLQQSPATL ENSBTAP00000015325/1-1095 PGKNSLGLDN SLSTSSEDPH SGCPSRSSSS LSFHSTPPPL PLLQQSPATL 851 900 ENSTTRP00000006272/1-1048 LLALPGGPAP LPPQPQNGLG RAPGAAGLGA MPLAEGLLGG LAGSGALPLN BACU006993/1-966 ---------- ---------- --VGATGRGT ---REG---- ---------- ENSP00000316426/1-1093 PLALPGAPAP LPPQPQNGLG RAPGAAGLGA MPMAEGLLGG LAGSGGLPLN bmy_14035T0/1-1074 PLALPGGPAP LPPQPQNGLG RAPGAAGLGA MPMAEGLLGG LAGSGALPLN ENSBTAP00000015325/1-1095 PLALPGGPAP LPPQPQNGLG RAPGAAGLGA MPMAEGLLGG LAGSGALPLN 901 950 ENSTTRP00000006272/1-1048 GLLGGLNGAA APNPAGLSQA GGAPALQLPG CLNSLTEQQR HLLQQQEQQL BACU006993/1-966 ---------- ---------- ---------- --QDLTEQQR HLLQQQEQQL ENSP00000316426/1-1093 GLLGGLNGAA APNPASLSQA GGAPTLQLPG CLNSLTEQQR HLLQQQEQQL bmy_14035T0/1-1074 GLLGGLNGAA APNPAGLSQA GGAPALQLPG CLNSLTEQQR HLLQQQEQQL ENSBTAP00000015325/1-1095 GLLGGLNGAA APNPAGLSQA GGAPTLQLPG CLNSLTEQQR HLLQQQEQQL 951 1000 ENSTTRP00000006272/1-1048 QQLQQLLASP QLTPXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU006993/1-966 QQLQQLLASP QLTPEHQTVV YQMIQQIQQK RELQRLQMAG GSQLPMASLL ENSP00000316426/1-1093 QQLQQLLASP QLTPEHQTVV YQMIQQIQQK RELQRLQMAG GSQLPMASLL bmy_14035T0/1-1074 QQLQQLLASP QLTPEHQTVV YQMIQQIQQK RELQRLQMAG GSQLPMASLL ENSBTAP00000015325/1-1095 QQLQQLLASP QLTPEHQTVV YQMIQQIQQK RELQRLQMAG GSQLPMASLL 1001 1050 ENSTTRP00000006272/1-1048 XXXXXXXXXX XXXXXXXTAS APTLLPR-AL VA-SLGNNTS LMAAAAAAAA BACU006993/1-966 AGSSTPLLSA GTPGLLPTAS APPLLPAGAL VAPSLGNNTS LMAAAAAAAA ENSP00000316426/1-1093 AGSSTPLLSA GTPGLLPTAS APPLLPAGAL VAPSLGNNTS LMAAAAAAAA bmy_14035T0/1-1074 AGSSTPLLSA GAPGLLPTAS APPLLPAGAL VAPSLGNNTS LMAAAAAAAA ENSBTAP00000015325/1-1095 AGSSTPLLSA GTPGLLPTAS APPLLPAGAL VAPSLGNNTS LMAAAAAAAA 1051 1100 ENSTTRP00000006272/1-1048 VAAAGGPPVL TAQTNPFISL SGADGSGSGP KGG------T ADKGASA--- BACU006993/1-966 VAAAGGPPVL TAQTNPFLNL SGADGSGSGP KGGARWFPQT PAKSVVALKT ENSP00000316426/1-1093 VAAAGGPPVL TAQTNPFLSL SGAEGSGGGP KGG------T ADKGASA--- bmy_14035T0/1-1074 VAAAGGPPVL TAQTHPFLSL SGADGSGSGP KGG------T ADKGASA--- ENSBTAP00000015325/1-1095 VAAAGGPPVL TAQTNPFLSL SGADGSASGP KGG------T ADKGASA--- 1101 1150 ENSTTRP00000006272/1-1048 ---------- ---------- ---------- ---------- ---------- BACU006993/1-966 PIRVELVAGK TYRWCVCGHS KKQPFCDGSH FFKRTGLSPL KFKAKETRVV ENSP00000316426/1-1093 ---------- ---------- ---------- ---------- ---------- bmy_14035T0/1-1074 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015325/1-1095 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSTTRP00000006272/1-1048 ---------- ---------- ----NQEKG- -- BACU006993/1-966 ALCTCKATQK PPYCDGTHRS ERVQKAEVGS PL ENSP00000316426/1-1093 ---------- ---------- ----NQEKG- -- bmy_14035T0/1-1074 ---------- ---------- ----NQEKG- -- ENSBTAP00000015325/1-1095 ---------- ---------- ----NQEKG- --