KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:55:23 2014 Check: 00 .. Name: ENSTTRP00000016491/1-1416 Len: 1515 Check: 1860 Weight: 1.00 Name: bmy_04640T0/1-1326 Len: 1515 Check: 814 Weight: 1.00 Name: BACU016285/1-1479 Len: 1515 Check: 8509 Weight: 1.00 Name: ENSP00000377665/1-1487 Len: 1515 Check: 701 Weight: 1.00 Name: ENSBTAP00000015341/1-1413 Len: 1515 Check: 4664 Weight: 1.00 // 1 50 ENSTTRP00000016491/1-1416 MVKLDIHTLA HHLKQERLYV NSEKQLIQRL NADVLKTAEK LYRTAWIAKQ bmy_04640T0/1-1326 MVKLDIHTLA HHLKQERLYV NSEKQLIQRL NADVLKTAEK LYRTAWIAKQ BACU016285/1-1479 MVKLDIHTLA HHLKQERLYV NSEKQLIQRL NADVLKTAEK LYRTAWIAKQ ENSP00000377665/1-1487 MVKLDIHTLA HHLKQERLYV NSEKQLIQRL NADVLKTAEK LYRTAWIAKQ ENSBTAP00000015341/1-1413 MVKLDIHTLA HHLKQERLYV NSEKQLIQRL NADVLKTAEK LYRTAWIAKQ 51 100 ENSTTRP00000016491/1-1416 QRINLDRLII TSAEASPAEC CQHAKILEDT QFVDGYKQLG FQETAYGEFL bmy_04640T0/1-1326 QRINLDRLII TSAEASPAEC CQHAKILEDT QFVDGYKQLG FQETAYGEFL BACU016285/1-1479 QRINLDRLII TSAEASPAEC CQHAKILEDT QFVDGYKQLG FQETAYGEFL ENSP00000377665/1-1487 QRINLDRLII TSAEASPAEC CQHAKILEDT QFVDGYKQLG FQETAYGEFL ENSBTAP00000015341/1-1413 QRINLDRLII TSAEASPAEC CQHAKILEDT QFVDGYKQLG FQETAYGEFL 101 150 ENSTTRP00000016491/1-1416 SRLRENPRLI ASSLVAGEKL NQENTQSVIY TVFTSLYGNC IMQEDESYLL bmy_04640T0/1-1326 SRLRENPRLI ASSLVAGEKL NQENTQSVIY TVFTSLYGNC IMQEDESYLL BACU016285/1-1479 SRLRENPRLI ASSLVAGEKL NQENTQSVIY TVFTSLYGNC IMQEDESYLL ENSP00000377665/1-1487 SRLRENPRLI ASSLVAGEKL NQENTQSVIY TVFTSLYGNC IMQEDESYLL ENSBTAP00000015341/1-1413 SRLRENPRLI ASSLVAGEKL NQENTQSVIY TVFTSLYGNC IMQEDESYLL 151 200 ENSTTRP00000016491/1-1416 QVLRYLIEFE LKESDNPRRL LRRGTCAFSI LFKLFSEGLF SAKLFLTATL bmy_04640T0/1-1326 QVLRYLIEFE LKESDNPRRL LRRGTCAFSI LFKLFSEGLF SAKLFLTATL BACU016285/1-1479 QVLRYLIEFE LKESDNPRRL LRRGTCAFSI LFKLFSEGLF SAKLFLTATL ENSP00000377665/1-1487 QVLRYLIEFE LKESDNPRRL LRRGTCAFSI LFKLFSEGLF SAKLFLTATL ENSBTAP00000015341/1-1413 QVLRYLIEFE LKESDNPRRL LRRGTCAFSI LFKLFSEGLF SAKLFLTATL 201 250 ENSTTRP00000016491/1-1416 HEPIMQLLVE DEDHLETDPN KLIERFSPSQ QEKLFGEKGS DRFRQKVQEM bmy_04640T0/1-1326 HEPIMQLLVE DEDHLETDPN KLIERFSPSQ QEKLFGEKGS DRFRQKVQEM BACU016285/1-1479 HEPIMQLLVE DEDHLETDPN KLIERFSPSQ QEKLFGEKGS DRFRQKVQEM ENSP00000377665/1-1487 HEPIMQLLVE DEDHLETDPN KLIERFSPSQ QEKLFGEKGS DRFRQKVQEM ENSBTAP00000015341/1-1413 HEPIMQLLVE DEDHLETDPN KLIERFSPAQ QEKLFGEKGS DRFRQKVQEM 251 300 ENSTTRP00000016491/1-1416 VDSNEAKLVA LVNKFIGYLK QNTYCFPHSL RWIVSQMYKT LSCVDRLEVG bmy_04640T0/1-1326 VDSNEAKLVA LVNKFIGYLK QNTYCFPHSL RWIVSQMYKT LSCVDRLEVG BACU016285/1-1479 VDSNEAKLVA LVNKFIGYLK QNTYCFPHSL RWIVSQMYKT LSCVDRLEVG ENSP00000377665/1-1487 VESNEAKLVA LVNKFIGYLK QNTYCFPHSL RWIVSQMYKT LSCVDRLEVG ENSBTAP00000015341/1-1413 VDSNEAKLVA LVNKFIGYLK QNTYCFPHSL RWIVSQMYKT LSCVDRLEVG 301 350 ENSTTRP00000016491/1-1416 EVRAMCTDLL LACFICPAVV NPEQYGIISD APINEVARFN LMQVGRLLQQ bmy_04640T0/1-1326 EVRAMCTDLL LACFICPAVV NPEQYGIISD APINEVARFN LMQVGRLLQQ BACU016285/1-1479 EVRAMCTDLL LACFICPAVV NPEQYGIISD APINEVARFN LMQVGRLLQQ ENSP00000377665/1-1487 EVRAMCTDLL LACFICPAVV NPEQYGIISD APINEVARFN LMQVGRLLQQ ENSBTAP00000015341/1-1413 EVRAMCTDLL LACFICPAVV NPEQYGIISD APINEVARFN LMQVGRLLQQ 351 400 ENSTTRP00000016491/1-1416 LAMTGSEEGD PRTKSSLGKF DKSCVAAFLD VVIGGRAVET PPMSSVNLLE bmy_04640T0/1-1326 LAMTGSEEGD PRTKSSLGKF DK-------- ---------- ---------- BACU016285/1-1479 LAMTGSEEGD PRTKSSLGKF DKSCVAAFLD VVIGGRAVET PPMSSVNLLE ENSP00000377665/1-1487 LAMTGSEEGD PRTKSSLGKF DKSCVAAFLD VVIGGRAVET PPLSSVNLLE ENSBTAP00000015341/1-1413 LAMTGSEEGD PRTKSSLGKF DKSCVAAFLD VVIGGRAVET PPMSSVNLLE 401 450 ENSTTRP00000016491/1-1416 GLSRTVVYIT YSQLITLVNF MKSVMSGDQL REDRMALDNL LANLPQAKPG bmy_04640T0/1-1326 ------IHVV VHKV------ ---------- -EVKFTIQEK TVRVSKER-- BACU016285/1-1479 GLSRTVVYIT YSQLITLVNF MKSVMSGDQL REDRMALDNL LANLPQAKPG ENSP00000377665/1-1487 GLSRTVVYIT YSQLITLVNF MKSVMSGDQL REDRMALDNL LANLPPAKPG ENSBTAP00000015341/1-1413 GLSRTVVYIT YSQLITLVNF MKSVMSGDQL REDRMALDNL LANLPQAKPG 451 500 ENSTTRP00000016491/1-1416 KSSSLEMTPY STPQLSPATT PANKKNRLPI ATRSRSRTNV LMDLHMDHEG bmy_04640T0/1-1326 ---------- ---------- ---------- STRSRSRTNV LMDLHMDHEG BACU016285/1-1479 KSSSLEMTPY STPQLSPATT PANKKNRLPI ATRSRSRTNV LMDLHMDHEG ENSP00000377665/1-1487 KSSSLEMTPY NTPQLSPATT PANKKNRLPI ATRSRSRTNM LMDLHMDHEG ENSBTAP00000015341/1-1413 KSSSLEMTPY STPQLSPAAT PANKKNRLPI ATRSRSRTNV LMDLHMDHEG 501 550 ENSTTRP00000016491/1-1416 SAQETIQEVQ PEEVLVISLG TGPQLTPGMM SENEVLNMQL SDGGQGDVPV bmy_04640T0/1-1326 SAQETIQEVQ PEEVLVISLG TGPQLTPGMM SENEVLNMQL SDGGQGDVPV BACU016285/1-1479 SAQETIQEVQ PEEVLVISLG TGPQLTPGMM SENEVLNMQL SDGGQGDVPV ENSP00000377665/1-1487 SSQETIQEVQ PEEVLVISLG TGPQLTPGMM SENEVLNMQL SDGGQGDVPV ENSBTAP00000015341/1-1413 SAQETIQEVQ PEEVLVISLG TGPQLTPGMM SENEVLNMQL SDGGQGDVPV 551 600 ENSTTRP00000016491/1-1416 DENKLHGKPD KTLRFSLCSD NLEGISEGPS NRSNSVSSLD LEGESVSELG bmy_04640T0/1-1326 DENKLHGKPD KTLRFSLCSD NLEGISEGPS NRSNSVSSLD LEGESVSELG BACU016285/1-1479 DENKLHGKPD KTLRFSLCSD NLEGISEGPS NRSNSVSSLD LEGESVSELG ENSP00000377665/1-1487 DENKLHGKPD KTLRFSLCSD NLEGISEGPS NRSNSVSSLD LEGESVSELG ENSBTAP00000015341/1-1413 DENKLHG--- ---------- --------PS NRSNSVSSLD LEGESVSELG 601 650 ENSTTRP00000016491/1-1416 AGPSGSNGVE ALQLLEHEQA TTQDNLDDKL RKFEIRDMMG LTDDRDISET bmy_04640T0/1-1326 AGPSGSNGVE ALQLLEHEQA TTQDNLDDKL RKFEIRDMMG LTDDRDISET BACU016285/1-1479 AGPSGSNGVE ALQLLEHEQA TTQDNLDDKL RKFEIRDMMG LTDDRDISET ENSP00000377665/1-1487 AGPSGSNGVE ALQLLEHEQA TTQDNLDDKL RKFEIRDMMG LTDDRDISET ENSBTAP00000015341/1-1413 AGPSGSNGVE ALQLLEHEQA TTQDNLDDKL RKFEIRDMMG LTDDRDISET 651 700 ENSTTRP00000016491/1-1416 VSETWSTDVL GSDFDPNIDE DRLQEIAGAA AENMLGSLLC LPGSGSVLLD bmy_04640T0/1-1326 VSETWSTDVL GSDFDPNIDE DRLQEIAGAA AENMLGSLLC LPGSGSVLLD BACU016285/1-1479 VSETWSTDVL GSDFDPNIDE DRLQEIAGAA AENMLGSLLC LPGSGSVLLD ENSP00000377665/1-1487 VSETWSTDVL GSDFDPNIDE DRLQEIAGAA AENMLGSLLC LPGSGSVLLD ENSBTAP00000015341/1-1413 VSETWSTDVL GSDFDPNIDE DRLQEIAGAA AENMLGSLLC LPGSGSVLLD 701 750 ENSTTRP00000016491/1-1416 PCTGSTISET TSEAWSVEVL PSDSXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04640T0/1-1326 PCTGSTISET TSEAWSVEVL PSDSEAPDLK QEERLQELES CSGLGSTSDD BACU016285/1-1479 PCTGSTISET TSEAWSVEVL PSDSEAPDLK QEERLQELES CSGLGSTSDD ENSP00000377665/1-1487 PCTGSTISET TSEAWSVEVL PSDSEAPDLK QEERLQELES CSGLGSTSDD ENSBTAP00000015341/1-1413 PCTGSTISET TSEAWSVEVL PSDSEAPDLK QEERLQELES CSGLGSTSDD 751 800 ENSTTRP00000016491/1-1416 XXXXXXXXXX XXXXXXXXXX ISATSEDIPN KIEDLRSECS SDFGGKDSVT bmy_04640T0/1-1326 TDVREVSSRP STPGLSVVS- ---------- ---------- ---------- BACU016285/1-1479 TDVREVSSRP STPGLSVVSG ISATSEDIPN KIEDLRSECS SDFGGKDSVT ENSP00000377665/1-1487 TDVREVSSRP STPGLSVVSG ISATSEDIPN KIEDLRSECS SDFGGKDSVT ENSBTAP00000015341/1-1413 TDVREVSSRP STPGLSVVSG ISATSEDIPN KIEDLRSECS SDFGGKDSVT 801 850 ENSTTRP00000016491/1-1416 SPDMDEVTH- ---------- ---------- ------GAHQ LTSPPSQSES bmy_04640T0/1-1326 ---------- ---------- ---------- ------GAHQ LTSPPSQSES BACU016285/1-1479 SPDMDEATH- ---------- ---------- ------GAHQ LTSPPSQSES ENSP00000377665/1-1487 SPDMDEITHD FLYILQPKQH FQHIEAEADM RIQLSSSAHQ LTSPPSQSES ENSBTAP00000015341/1-1413 SPDMDEVTH- ---------- ---------- ------GAHQ LTSPPSQSES 851 900 ENSTTRP00000016491/1-1416 LLAMFDPLSS HE-GASAVVR PKVHYARPSH PPPDPPILEG AAGGNEARLP bmy_04640T0/1-1326 LLAMFDPLSS HE-GASAVVR PKVHYARPSH PPPDPPILEG AAGGNEARLP BACU016285/1-1479 LLAMFDPLSS HE-GASAVVR PKVHYARPSH PPPDPPILEG AAGGNEARLP ENSP00000377665/1-1487 LLAMFDPLSS HE-GASAVVR PKVHYARPSH PPPDPPILEG AVGGNEARLP ENSBTAP00000015341/1-1413 LLAMFDPLSS HEGGASAVVR PKVHYARPSH PPPDPPILEG AVGGNEARLP 901 950 ENSTTRP00000016491/1-1416 NFSSHVLTPA EMEAFKQRHS YPERLVRSRS SDIVSSVRRP MSDPSWNRRP bmy_04640T0/1-1326 NFGSHVLTPA EMEAFKQRHS YPERLVRSRS SDIVSSVRRP MSDPSWNRRP BACU016285/1-1479 NFGSHVLTPA EMEAFKQRHS YPERLVRSRS SDIVSSVRRP MSDPSWNRRP ENSP00000377665/1-1487 NFGSHVLTPA EMEAFKQRHS YPERLVRSRS SDIVSSVRRP MSDPSWNRRP ENSBTAP00000015341/1-1413 TFGSHILTPA EMEAFKQRHS YPERLVRSRS SDVVSSVRRP MSDPSWNRRP 951 1000 ENSTTRP00000016491/1-1416 GNEERELPQA AAIGATSLVA APHSSSSSPS KDSSRGETEE RKDSDDEKSD bmy_04640T0/1-1326 GNEERELPQA AAIGATSLVA APHSSSSSPS KDSSRGETEE RKDSDDEKSD BACU016285/1-1479 GNEERELPQA AAIGATSLVA APHSSSSSPS KDSSRGETEE RKDSDDEKSD ENSP00000377665/1-1487 GNEERELPPA AAIGATSLVA APHSSSSSPS KDSSRGETEE RKDSDDEKSD ENSBTAP00000015341/1-1413 GNEERELPPA AAIGATSLVA APHSSSSSPS KDSSRGETEE RKDSDDEKSD 1001 1050 ENSTTRP00000016491/1-1416 RNRPWWRKRF VSAMPKAPIP FRKKEKQEKD KDDLGPDRFS TLTDDPSPRL bmy_04640T0/1-1326 RNRPWWRKRF VSAMPKAPIP FRKKEKQEKD KDDLGPDRFS TLTDDPSPRL BACU016285/1-1479 RNRPWWRKRF VSAMPKAPIP FRKKEKQEKD KDDLGPDRFS TLTDDPSPRL ENSP00000377665/1-1487 RNRPWWRKRF VSAMPKAPIP FRKKEKQEKD KDDLGPDRFS TLTDDPSPRL ENSBTAP00000015341/1-1413 RNRPWWRKRF VSAMPK---- ---------- ---------- ---DDPSPRL 1051 1100 ENSTTRP00000016491/1-1416 SAQTQVAEDI LDKYRNAIK- -----RTS-- ------PSEG ALANYESA-- bmy_04640T0/1-1326 SAQAQVAEDI LDKYRNAIK- -----RTS-- ------PSEG ALANYESA-- BACU016285/1-1479 SAQAQVAEDI LDKYRNRKQT NKEGLRTSQM RWTSDNPAGG ANSGLFSEVF ENSP00000377665/1-1487 SAQAQVAEDI LDKYRNAIK- -----RTS-- ------PSDG AMANYEST-- ENSBTAP00000015341/1-1413 SAQAQVAEDI LDKYRNAIK- -----RTS-- ------PSEG ALANYESA-- 1101 1150 ENSTTRP00000016491/1-1416 ---------- ---------- ---------- ---------- ---------- bmy_04640T0/1-1326 ---------G DNHDK---EW NSNFRITVIK VVRIKGNLKL WVMV------ BACU016285/1-1479 RLLFLDGSLG RSEEALVHAL HSPPSMKGCP VVEGDALLKG ALPGGG---- ENSP00000377665/1-1487 ------EVMG DGESA----- HDSPRDEALQ NISADDLPDS ASQAAHPQDS ENSBTAP00000015341/1-1413 ------EVMG DGESA----- HDSPRDETLQ NISADDLPDS ASQAAHPQDS 1151 1200 ENSTTRP00000016491/1-1416 -----DAKKK LRLALCSADS VAFPVLTHST RNGLPDHTDP EDNEIVCFLK bmy_04640T0/1-1326 ----KVHTIR LVTKPCKTSQ LTISQILRAK PPTLRIQLSL TDNEIVCFLK BACU016285/1-1479 ----RDAKKK LRLALCSADS VAFPVLTHST RNGLPDHTDP EDNEIVCFLK ENSP00000377665/1-1487 AFSYRDAKKK LRLALCSADS VAFPVLTHST RNGLPDHTDP EDNEIVCFLK ENSBTAP00000015341/1-1413 AFSYRDAKKK LRLALCSADS VAFPVLTHST RNGLPDHTDP EDNEIVCFLK 1201 1250 ENSTTRP00000016491/1-1416 VQIAEAINLQ DKNLMAQLQE TMRCVCRFDN RTCRKLLASI AEDYRKRAPY bmy_04640T0/1-1326 VQIAEAINLQ DKNLMAQLQE TMRCVCRFDN RTCRKLLASI AEDYRKRAPY BACU016285/1-1479 VQIAEAINLQ DKNLMAQLQE TMRCVCRFDN RTCRKLLASI AEDYRKRAPY ENSP00000377665/1-1487 VQIAEAINLQ DKNLMAQLQE TMRCVCRFDN RTCRKLLASI AEDYRKRAPY ENSBTAP00000015341/1-1413 VQIAEAINLQ DKNLMAQLQE TMRCVCRFDN RTCRKLLASI AEDYRKRAPY 1251 1300 ENSTTRP00000016491/1-1416 IAYLTRCRQG LQTTQAHLER LLQRVLRDKE VANRYFTTVC VRLLLESKEK bmy_04640T0/1-1326 IAYLTRCRQG LQTTQAHLER LLQRVLRDKE VANRYFTTVC VRLLLESKEK BACU016285/1-1479 IAYLTRCRQG LQTTQAHLER LLQRVLRDKE VANRYFTTVC VRLLLESKEK ENSP00000377665/1-1487 IAYLTRCRQG LQTTQAHLER LLQRVLRDKE VANRYFTTVC VRLLLESKEK ENSBTAP00000015341/1-1413 IAYLTRCRQG LQTTQAHLER LLQRVLRDKE VANRYFTTVC VRLLLESKEK 1301 1350 ENSTTRP00000016491/1-1416 KIREFIQXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04640T0/1-1326 KIREFIQDFQ KLTAADDKTA QVEDFLQFLY GAMAQDVIWQ NASEEQLQDA BACU016285/1-1479 KIREFIQDFQ KLTAADDKTA QVEDFLQFLY GAMAQDVIWQ NASEEQLQDA ENSP00000377665/1-1487 KIREFIQDFQ KLTAADDKTA QVEDFLQFLY GAMAQDVIWQ NASEEQLQDA ENSBTAP00000015341/1-1413 KIREFIQDFQ KLTAADDKTA QVEDFLQFLY GAMAQDVIWQ NASEEQLQDA 1351 1400 ENSTTRP00000016491/1-1416 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXV LHEHIQRLSK VVTANHRALQ bmy_04640T0/1-1326 QLAIERSVMN RIFKLAFYPN QDGDILRDQV LHEHIQRLSK VVTANHRALQ BACU016285/1-1479 QLAIERSVMN RIFKLAFYPN QDGDILRDQV LHEHIQRLSK VVTANHRALQ ENSP00000377665/1-1487 QLAIERSVMN RIFKLAFYPN QDGDILRDQV LHEHIQRLSK VVTANHRALQ ENSBTAP00000015341/1-1413 QLAIERSVMN RIFKLAFYPN QDGDILRDQV LHEHIQRLSK VVTANHRALQ 1401 1450 ENSTTRP00000016491/1-1416 IPEXXXXXXX XXXXXXXXXX XXXXKTPRDK VQCILRMCST IMNLQSLANE bmy_04640T0/1-1326 IPEVYLREAP WPSAQSEIRT ISAYKTPRDK VQCILRMCST IMNLLSLANE BACU016285/1-1479 IPEVYLREAP WPSAQSEIRT ISAYKTPRDK VQCILRMCST IMNLLSLANE ENSP00000377665/1-1487 IPEVYLREAP WPSAQSEIRT ISAYKTPRDK VQCILRMCST IMNLLSLANE ENSBTAP00000015341/1-1413 IPEVYLKEAP WPSAQSEIRT ISAYKTPRDK VQCILRMCST IMNLLSLANE 1451 1500 ENSTTRP00000016491/1-1416 DSVPGADDFV PVLVFVLIKX XXXXXXXXXX XXXXXXXXCL SGEESYWWMQ bmy_04640T0/1-1326 DSVPGADDFV PVLVFVLIKA NPPCLLSTVQ YISSFYASCL SGEESYWWMQ BACU016285/1-1479 DSVPGADDFV PVLVFVLIKA NPPCLLSTVQ YISSFYASCL SGEESYWWMQ ENSP00000377665/1-1487 DSVPGADDFV PVLVFVLIKA NPPCLLSTVQ YISSFYASCL SGEESYWWMQ ENSBTAP00000015341/1-1413 DSVPGADDFV PVLVFVLIKA NPPCLLSTVQ YISSFYASCL SGEESYWWMQ 1501 1550 ENSTTRP00000016491/1-1416 FTAAVEFIKT IDDRK bmy_04640T0/1-1326 FTAAVEFIKT IDDRK BACU016285/1-1479 FTAAVEFIKT IDDRK ENSP00000377665/1-1487 FTAAVEFIKT IDDRK ENSBTAP00000015341/1-1413 FTAAVEFIKT IDDRK