KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:55:29 2014 Check: 00 .. Name: ENSTTRP00000004689/1-841 Len: 919 Check: 737 Weight: 1.00 Name: ENSP00000389395/1-795 Len: 919 Check: 9337 Weight: 1.00 Name: ENSBTAP00000015359/1-793 Len: 919 Check: 3001 Weight: 1.00 Name: bmy_06906T0/1-748 Len: 919 Check: 225 Weight: 1.00 Name: BACU017728/1-795 Len: 919 Check: 6882 Weight: 1.00 // 1 50 ENSTTRP00000004689/1-841 ---------- ---------- ---------- ---------- ---------- ENSP00000389395/1-795 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015359/1-793 ---------- ---------- ---------- ---------- ---------- bmy_06906T0/1-748 MRMLSNVRTK LPYPPNKQPQ CLFSGAFLPT MTEPTGLDSE MHKYNQGQVP BACU017728/1-795 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000004689/1-841 ---------- ---------- MLEARLQSQQ RSSQHGREAS LWSSGLGMKL ENSP00000389395/1-795 ---------- -------MAT MLEGRCQTQP RSSPSGREAS LWSSGFGMKL ENSBTAP00000015359/1-793 ---------- -------MNT MAEARLQTQK KSSQDGQETS LWSSGFGMKL bmy_06906T0/1-748 LERERGRGGW FPDVIDPVDT MLEARLQTQQ RSSQNGQETS LWSSGFGMKL BACU017728/1-795 ---------- -------VDT MLEARLQTQQ RSSQNGRETS LWSSGFGMKL 101 150 ENSTTRP00000004689/1-841 EAVTPFLGKY RPFVGRCCQT CTPKSWESLF HRSIMDLGFC SVIQVKEENT ENSP00000389395/1-795 EAVTPFLGKY RPFVGRCCQT CTPKSWESLF HRSITDLGFC NVILVKEENT ENSBTAP00000015359/1-793 EAVTPFLGKY RPFVGRCCQT CTPKSWESLF HRSIMDLGFC NVILVKEENT bmy_06906T0/1-748 EAVTPFLGKY RPFVGRCCQT CTPKSWESLF HRSIMDLGFC NVILVKEENT BACU017728/1-795 EAVTPFLGKY RPFVGRCCQT CTPKSWESLF HRSIMDLGFC NVILVKEENT 151 200 ENSTTRP00000004689/1-841 RFRGWLVRRL CYFLWSLEQH IPPCQDAPQK VVESTGVQNV ILGRAPGGAG ENSP00000389395/1-795 RFRGWLVRRL CYFLWSLEQH IPPCQDVPQK IMESTGVQNL LSGRVPGGTG ENSBTAP00000015359/1-793 RFRGWLVRRL CYFLWSLEQH IPPCQDASQK IMESTGVQNV ISGRAPGGAG bmy_06906T0/1-748 R--------- ---------- ---------- ------VQNV IPGRAPGGAG BACU017728/1-795 RFRGWLVRRL CYFLWSLEQH IPPCQDAPQK IVESAGVQNV IPGRAPGGAG 201 250 ENSTTRP00000004689/1-841 EGQVPSHVKR EVQRILGHIQ APPRPFLLRL VSWALLRILN CLFLNVQLHK ENSP00000389395/1-795 EGQVPDLVKK EVQRILGHIQ APPRPFLVRL FSWALLRFLN CLFLNVQLHK ENSBTAP00000015359/1-793 EGQVPSHVRK EVQRILGHIQ APPRPFLLRL FSWALLRFLN CLFLNVQLYR bmy_06906T0/1-748 AGQVPSHVKR EVQRILGHIQ APPRPFL--- ---------- ---------- BACU017728/1-795 AGQVPSHVKR DIQRILGHMQ APPRPVLIRL FSWALLRILN CFFLNVQLHK 251 300 ENSTTRP00000004689/1-841 GQMKMVHKAA QA-GLPLVLL STHKSLLDGI LLPFVLLSQG LGVLRVAWDP ENSP00000389395/1-795 GQMKMVQKAA QA-GLPLVLL STHKTLLDGI LLPFMLLSQG LGVLRVAWDS ENSBTAP00000015359/1-793 GQMKMVQKAS QA-GSPLVFL STHKSVLDGI LLPFVLLSQG VGVLRVAWDP bmy_06906T0/1-748 ---------- ---------- ---------- ---------- ---------- BACU017728/1-795 GQMKMVHKAA QAQGSPLVLL STHKSLLDGI LLPFVLLSQG LGVLRVAWDP 301 350 ENSTTRP00000004689/1-841 RTCSPILRAL LKKLGGLFLP PEANLSLDSS EGVLARAVVH AAVEQLLVSG ENSP00000389395/1-795 RACSPALRAL LRKLGGLFLP PEASLSLDSS EGLLARAVVQ AVIEQLLVSG ENSBTAP00000015359/1-793 RTCSPLLRAL LKKLGGLFLP PEANLSPDSP EGVLARAVVH ATVEQLLASR bmy_06906T0/1-748 ------LRAL LKKLGGLFLP PEASLSLDSS EGVLARAVVH AAVEQLLVSG BACU017728/1-795 RTCSPILRAL LKKLGGLFLP PEASLSLDSS EGVLARAVVH AAVEQLLVSG 351 400 ENSTTRP00000004689/1-841 QPLLIFLEGP PGVQGPRLSA LGQTWLGLVV QAVQVGIVPD AMLVPVAITY ENSP00000389395/1-795 QPLLIFLEEP PGALGPRLSA LGQAWVGFVV QAVQVGIVPD ALLVPVAVTY ENSBTAP00000015359/1-793 QPLLIFLEEP PGVRGPRLSA LGLSWLGLVV QGVQAGIVPD TLLVPVAVTY bmy_06906T0/1-748 QPLLIFLEEP PGAQGPRLSA LGQTWLGLVV QAVQVGVVPD AMLVPVAIAY BACU017728/1-795 QPLLIFLEEP PGAQGPRLSA LGQTWLGLVV QVVQVGVVPD AMLVPVAISY 401 450 ENSTTRP00000004689/1-841 DLVPDAPRDT YHASAPLGLW TGALAVLWSL -RGWGCSRRA CVRVHLAQPF ENSP00000389395/1-795 DLVPDAPCDI DHASAPLGLW TGALAVLRSL WSRWGCSHRI CSRVHLAQPF ENSBTAP00000015359/1-793 DLVPEAPHDT CHALAPLGLW TGALAVLRSL -RRWGCGRRV CVRVNLAQPF bmy_06906T0/1-748 DLVPDAPRDT YHASAPLGLW TGALAVLRSL -RGWSCSRRA CVRVHLAQPF BACU017728/1-795 DLVPDAPRDT YHASAPLGLW TGALAVLRSL -RGWGCSRRA CVRVHLAQPF 451 500 ENSTTRP00000004689/1-841 SLHEYTVNAR SCWGSRQTLE QLLQPIVLGQ CTVVPDTEKV QEWTPV-GPL ENSP00000389395/1-795 SLQEYIVSAR SCWGGRQTLE QLLQPIVLGQ CTAVPDTEKE QEWTPITGPL ENSBTAP00000015359/1-793 SLQEYIIDAR SCWGSRQTLE QLLQPIVLGQ CTAVP-TLRR AEWTPVTGPL bmy_06906T0/1-748 SLHEYIINAR SCWGSRQTLE QLLQPIVLGQ CTVVPDTEKE QEWTPVTGPL BACU017728/1-795 SLHEYIINAR SCWGSRQTLE QLLQPIVLGQ CTVVPDTEKE QEWTPVTGPL 501 550 ENSTTRP00000004689/1-841 LT--EEDQLV --RLTCHVLN ACVASSAVMS TAIMATLLLF KHQKGVCLSH ENSP00000389395/1-795 LALKEEDQLL VRRLSCHVLS ASVGSSAVMS TAIMATLLLF KHQK------ ENSBTAP00000015359/1-793 LALREEDQLL VRRLSWHVLN ASVASSAVMS TAIMATLLLF KHQK------ bmy_06906T0/1-748 LALKEEDQLL VRRLSRHVLN ASTASSAVMS TAIMATLLLF KHQK------ BACU017728/1-795 LALKEEDQLL VRRLSRHVLN ASTASSAVMS TAIMATLLLF KHQK------ 551 600 ENSTTRP00000004689/1-841 LLGEFSWLTE ETLLRGFDVG FSGQLQCLVQ HTLSLLRPHV ALLRVQQGDL ENSP00000389395/1-795 LLGEFSWLTE EILLRGFDVG FSGQLRSLLQ HSLSLLRAHV ALLRIRQGDL ENSBTAP00000015359/1-793 LLGEFSWLTE ETLLRGFDVG FSGQLRCLVQ HTLSLLRPHV ALLRIQQGDL bmy_06906T0/1-748 LLGEFSWLTE ETLLRGFDVG FSGQLQCLVQ HALSLLRPHV ALLRVQQGDL BACU017728/1-795 LLGEFSWLTE EQLLRGFDVG FSGQLQCLVQ HALSLLRPHV ALLRVQQGDL 601 650 ENSTTRP00000004689/1-841 LVVLRPGPGL AHLARLSSEM LPAFLSEAVG ACAVWGLLVG RVLPEGPWEL ENSP00000389395/1-795 LVVPQPGPGL THLAQLSAEL LPVFLSEAVG ACAVRGLLAG RVPPQGPWEL ENSBTAP00000015359/1-793 LVVPRPGPGL TSLARLSAEL LPTFLSEAVG ACAVRGLLAG RVPPEGPWEL bmy_06906T0/1-748 LVVLRPGPGL THLARLSSEL LPAFLSEAVG ACAVRALLAG RVLPEGPWEL BACU017728/1-795 LVVLRPGPGL THLAHLSSEL LPAFLSEAVG ACAVRALLAG RVPPEGPWEL 651 700 ENSTTRP00000004689/1-841 QGIELLSQNQ LYHQILLLMH LLPQELLLLQ XXXXXXXXXX XXXXXXXXXX ENSP00000389395/1-795 QGILLLSQNE LYRQILLLMH LLPQDLLLLK PCQSSYCYCQ EVLDRLIQCG ENSBTAP00000015359/1-793 QGVELLSQKE LYCQILLLLH LLPQDLLLLQ PCQSCYCYCQ EVLDRLIQCG bmy_06906T0/1-748 QGIELLSQNQ LYHQILLLMH LLPQDLLLLQ PCQSSYCYCQ DVLDRLIQCG BACU017728/1-795 QGIELLSQNQ LYHQILLLMH LLPQDLLLLQ PCQSSYCYCQ EVLDRLIQCG 701 750 ENSTTRP00000004689/1-841 XXXXXXTPGS RPACDTGRRR LSAKLLWKPS GDFTDSDSDD FEEAEGRYFR ENSP00000389395/1-795 LLVAEETPGS RPACDTGRQR LSRKLLWKPS GDFTDSDSDD FGEADGRYFR ENSBTAP00000015359/1-793 LLVAEETRGS QPACDTGRQR LSARLLWKLS GDFTDSDSDD FEEAEGRYFR bmy_06906T0/1-748 LLVAEETPGS RPACDTGRQR LSAKLLWKPS GDFTDSDSDD FEEAEGRYFR BACU017728/1-795 LLVAEETSGS RPACDTGRQR LSAKLLWKPS GDFTDSDSDD FEEAEGRYFR 751 800 ENSTTRP00000004689/1-841 VRWEHQGRAV GRQWAALTLA CPLQLSQQSR CPDFFLFLCR LLSPLLKAFA ENSP00000389395/1-795 ---------- ---------- ----LSQQSH CPDFFLFLCR LLSPLLKAFA ENSBTAP00000015359/1-793 ---------- ---------- ----LSQQSR CPDFFLFLCR LLSPVLKAFA bmy_06906T0/1-748 ---------- ---------- ----LSQQSR CPDFFLFLCR LLSPLLKAFA BACU017728/1-795 ---------- ---------- ----LNQQSR CPDFFLFLCR LLSPLLKAFA 801 850 ENSTTRP00000004689/1-841 QAATFLHRGQ LPDTGEARAT APSGEAVPAW GPRPQTSLSH RVGLCGAAVA ENSP00000389395/1-795 QAAAFLRQGQ LPDT------ ---------- ---------- ELGYTEQLFQ ENSBTAP00000015359/1-793 QAAAFLHRGR LPDT------ ---------- ---------- ESGYTEQLFQ bmy_06906T0/1-748 QAATFLHQGQ LPDT------ ---------- ---------- ESGYAEQLFR BACU017728/1-795 QAATFLHQGQ LPDT------ ---------- ---------- ESGYAEQLFR 851 900 ENSTTRP00000004689/1-841 VLRGHRPGGR VLRVCGPKSR HQCRLDLQRP GGAAADAQPC RPHAPPVPHL ENSP00000389395/1-795 FLQATAQEEG IFECADPKLA ISAVWTFRDL GVLQQTPSPA GPRLHLSPTF ENSBTAP00000015359/1-793 FLRATAQEEG LFECADPNLA ISAIWTFRDL GVLQQTPGPT GPMLHLSPAF bmy_06906T0/1-748 FLEATAQEEG FFECVDPNLA ISAVWTFRDL GVLQQTPSPA GPMLHLSRTF BACU017728/1-795 FLEATAQEEG FFECVDPNLA ISAVWTFRDL GVLQQTPSPA GPMLHLSRTF 901 950 ENSTTRP00000004689/1-841 CQPGQSGKAG T-VHPAVHL ENSP00000389395/1-795 ASLDNQEKLE QFIRQFICS ENSBTAP00000015359/1-793 ASRDSQEKLG QFIRQFICS bmy_06906T0/1-748 ASRDNQEKLE QFIRQFICG BACU017728/1-795 ASGDNQEKLE WFIQQFICG