KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:55:43 2014 Check: 00 .. Name: BACU006711/1-299 Len: 573 Check: 3674 Weight: 1.00 Name: ENSP00000364398/1-413 Len: 573 Check: 5691 Weight: 1.00 Name: ENSTTRP00000005477/1-415 Len: 573 Check: 984 Weight: 1.00 Name: bmy_19206T0/1-560 Len: 573 Check: 6695 Weight: 1.00 Name: ENSBTAP00000015392/1-417 Len: 573 Check: 1994 Weight: 1.00 // 1 50 BACU006711/1-299 --MCCCRP-- ---------- ---CVLAL-- ---------P FDF------- ENSP00000364398/1-413 MKGALGSPVA --AAGAAMQE SFGCVVANRF HQLLDDESDP FDILREAERR ENSTTRP00000005477/1-415 MKGALGSPVA AAAAGAAMQE SFGCVVANRF H-LLDDESDP FDILREAERR bmy_19206T0/1-560 MKGALGSPVA AAAAGAAMQE SFGCVVANRF HQLLDDESDP FDILREAERR ENSBTAP00000015392/1-417 MKGALGSPVA AAAAGAAMQE SFGCVVANRF HQLLDDESDP FDILREAERR 51 100 BACU006711/1-299 ---------- ---------- ---------- ---------- ---------- ENSP00000364398/1-413 RQQQLQRKRR DEAAAAA--G AGPRGGRSPA GASGHRAGA- GGRRESQKER ENSTTRP00000005477/1-415 RQQHLQRKRR DEAVGAVGLW FGNRGGRSPA GASGHRPGAG GG-RESQKER bmy_19206T0/1-560 RQQQLQRKRR DEAAGAAA-G AGNRGGRSPA GASGHRPGAG GGRRESQKER ENSBTAP00000015392/1-417 RQQQLQRKRR DEAAAAAA-G AGNRGGRSPA GASGHRPGAG GGRRESQKER 101 150 BACU006711/1-299 ---------- --------SL SGQKRTSRRG EQQGWSES-- ---------- ENSP00000364398/1-413 KSLPAPVAQR PDSPGGGLQA PGQKRTPRRG EQQGWNDS-- ---------- ENSTTRP00000005477/1-415 KSLPAPGAQQ PDSPGGGPQP PGQKRTSRRG EQQGWSES-- ---------- bmy_19206T0/1-560 KSLPAPGAQQ PDSPGGGPQP PGQKRTARRG EQQGWSESGG TESRAEILQG ENSBTAP00000015392/1-417 KSLPAPSSQQ PDSPGGGPQP PGQKRTPRRG EQQGWSDS-- ---------- 151 200 BACU006711/1-299 ---------- ---------- ---------- ---------- ---------- ENSP00000364398/1-413 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005477/1-415 ---------- ---------- ---------- ---------- ---------- bmy_19206T0/1-560 YRPYETERQA DFTPEKFTDE KPVDRFDRDR PLRGRGGPRG GMRSRGRGGP ENSBTAP00000015392/1-417 ---------- ---------- ---------- ---------- ---------- 201 250 BACU006711/1-299 ---------- ---------- ---RGTEVTL DRAERRSYRE YRPYETERQA ENSP00000364398/1-413 ---------- ---------- ---RGPEGML ERAERRSYRE YRPYETERQA ENSTTRP00000005477/1-415 ---------- ---------- ---RGTEVTL DRAERRSYRE YRPYETERQA bmy_19206T0/1-560 GNRAFDGQKR TSRRGEQQGW SETRGTEVTL DRAERRSYRE YRPYETERQA ENSBTAP00000015392/1-417 ---------- ---------- ---RGTEVTL DRAERRSYRE YRPYDTERQA 251 300 BACU006711/1-299 DFTPEKFTDE KPVDRFDRDR PEKPVDRFDR DRPLRGRGGP RGGMRSRGRG ENSP00000364398/1-413 DFTAEKFPDE KPGDR----- -------FDR DRPLRGRGGP RGGMRGRGRG ENSTTRP00000005477/1-415 DFTPEKFTDE RPVDR----- -------FDR ERPLRGRGCP RGGMRSRGRG bmy_19206T0/1-560 DFTPEKFTDE KPVDR----- -------FDR DRPLRGRGGP RGGMRSRGRG ENSBTAP00000015392/1-417 DFPPEKFTDE KPIDR----- -------FDR DRPLRGRGGP RGGMRSRGRG 301 350 BACU006711/1-299 GPGNRAFDGF DQRGKREFER YSGNDKIAIR TEDNTGGYGV RTWGSGKDTR ENSP00000364398/1-413 GPGNRVFDAF DQRGKREFER YGGNDKIAVR TEDNMGGCGV RTWGSGKDTS ENSTTRP00000005477/1-415 GPGNRAFDGF DQRGKREFER YSGNDKIAIR TEDNMGGYGV RTWGSGKDTS bmy_19206T0/1-560 GPGNRAFDGF DQRGKREFER YSGNDKIAIR TEDNMGGYGV RTWGSGKDTS ENSBTAP00000015392/1-417 GPGNRTFDGF DQRGKREFER YGGNDKIASR TEDNMGGYGV HTWGSGKDTS 351 400 BACU006711/1-299 ---------- ---------- ---------- ---------- ---------- ENSP00000364398/1-413 DVEPTAPMEE PTVVEESQGT PEEESPAK-- ---------- ---------- ENSTTRP00000005477/1-415 DMDPTAPMEE TTVVEESLGP LEEESPAK-- ---------- ---------- bmy_19206T0/1-560 DMDLTAPMEE TTVVEESLGP LEAESPAKWS HCPRYPSGAS QQISLPLLNM ENSBTAP00000015392/1-417 DTDPAAPMEE TTVVEESLGP LEDESPAK-- ---------- ---------- 401 450 BACU006711/1-299 ---------- ---------- ---------V PELEVEEETQ VQEMTLDEWK ENSP00000364398/1-413 ---------- ---------- ---------V PELEVEEETQ VQEMTLDEWK ENSTTRP00000005477/1-415 ---------- ---------- ---------V PELEVEEETQ VQEMTLDEWK bmy_19206T0/1-560 LDSEHPVKIA GAAVHRSCSL VADHTEKFLV PELEVEEETQ VQEMTLDEWK ENSBTAP00000015392/1-417 ---------- ---------- ---------V PELEVEEETQ VQEMTLDEWK 451 500 BACU006711/1-299 NLQEQTRPKP EFNIRKPEST VPSKAVVIHK SKYRDDLVKD DYEDDAHVFR ENSP00000364398/1-413 NLQEQTRPKP EFNIRKPEST VPSKAVVIHK SKYRDDMVKD DYEDDSHVFR ENSTTRP00000005477/1-415 NLQEQTRPKP EFNIRKPEST VPSKAVVIHK SKYRDDLVKD DYEDDAHVFR bmy_19206T0/1-560 NLQEQTRPKP EFNIRKPEST VPSKAVVIHK SKYRDDLVKD DYEDDAHVFR ENSBTAP00000015392/1-417 NLQEQTRPKP EFNIRKPEST VPSKAVVIHK SKYRDDMVKD DYEDDAHVFR 501 550 BACU006711/1-299 KAANDITSQL EINFGNLPRP GRGARGGTRG GRGRIRRAEN YGPRAEVVTH ENSP00000364398/1-413 KPANDITSQL EINFGNLPRP GRGARGGTRG GRGRIRRAEN YGPRAEVVMQ ENSTTRP00000005477/1-415 K-GHDITSQL EIIFGNFPRL GRGARGCTPG RLGRIRRAEN YGPRAEVVTQ bmy_19206T0/1-560 KAANDITSQL EINFGNLPRP GRGARGGTRG GRGRIRRAEN YGLRAEVVGL ENSBTAP00000015392/1-417 KAANDITSQL EINFGNLPRP GRGARGGTRG GRGRIRRAEN YGARAEVVIQ 551 600 BACU006711/1-299 DVAPNPD--- ----DPEDFP ALA ENSP00000364398/1-413 DVAPNPD--- ----DPEDFP ALS ENSTTRP00000005477/1-415 DVAPNPD--- ----DPEDFP ALA bmy_19206T0/1-560 QGSPMSAMNA RSELEKNSHI CIR ENSBTAP00000015392/1-417 DVAPNPD--- ----DPEDFP ALA