KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:55:44 2014 Check: 00 .. Name: ENSP00000266659/1-266 Len: 273 Check: 9713 Weight: 1.00 Name: ENSBTAP00000015396/1-272 Len: 273 Check: 4853 Weight: 1.00 Name: ENSTTRP00000001565/1-266 Len: 273 Check: 8890 Weight: 1.00 Name: bmy_20670T0/1-267 Len: 273 Check: 3174 Weight: 1.00 Name: BACU016409/1-178 Len: 273 Check: 2228 Weight: 1.00 // 1 50 ENSP00000266659/1-266 ------MRVT LATIAWMVSF VSNYSHTANI LPDIENEDFI KDCVRIHNKF ENSBTAP00000015396/1-272 MSDSLSRRVT FAVTAWMLSV VSSSSAPANT LPDIENEDFI KDCVRMHNKF ENSTTRP00000001565/1-266 ------MRVT LAVTHWMLSV VSSSSSPANT LPDIENEDFI KDCVRMHNKF bmy_20670T0/1-267 ------MRVT LAVTACMLSV VSSSSSPANT LPDIKNEDFI KDCVRMHNKF BACU016409/1-178 ------MRVT LAVTACMLSV VSSSSSPANT LPDIENEGFI KDCVRMHNKF 51 100 ENSP00000266659/1-266 RSEVKPTASD MLYMTWDPAL AQIAKAWASN CQFSHNTRLK PPHKLHPNFT ENSBTAP00000015396/1-272 RSSVTPAASD MLYMTWDPLL AQIAKAWASH CEFAHNKRLK PPYKLHPNFT ENSTTRP00000001565/1-266 RSEVTPKASD MLYMTWDPVL AQIAKAWARN CQFAHNIQLK LPHKLHPNFT bmy_20670T0/1-267 RSEVTPKASD MLYMTWDPAL AQIAKAWARN CQFAHNTQLK PPNKLHPNFT BACU016409/1-178 RSEVTPKASD MLYMTWDPVL ARIAKAWARN CLFAHNTQLK PPHKLHPNFT 101 150 ENSP00000266659/1-266 SLGENIWTGS VPIFSVSSAI TNWYDEIQDY DFKTRICKKV CGHYTQVVWA ENSBTAP00000015396/1-272 SLGENLWTGS LSIFSVSSAI TAWYDEVKYY DFKTRKCNKV CGHYTQVVWA ENSTTRP00000001565/1-266 SLGENLWTGS LYLFSVSSAV TDWYNEIQYY DFKTRKCDKV CGHYTQIVWA bmy_20670T0/1-267 SLGENLWTGS LSLFSVSSAV TDWYNEIQYY DFKTQKCDKV CGHYTQIVWA BACU016409/1-178 SLGENLWTGS LSLFSVSSAV TDWYNEIQYY DFKTQKCDKV CGHYTQIVWA 151 200 ENSP00000266659/1-266 DSYKVGCAVQ FCPKVSGFDA LSNGAHFICN YGPGGNYPTW PYKRGATCSA ENSBTAP00000015396/1-272 DSYKVGCAVH FCPRVSGFGA LLNGAHFICN YGPPGNYPTW PYKKGSTCSA ENSTTRP00000001565/1-266 DSYKVGCAVQ FCSRVAGFES LRNGAHFICN YGPAGNYPTW PYKKGSTCSA bmy_20670T0/1-267 DSYKVGCAVQ FCPRVSGFET LRNGAHFICN YGPGGNYPTW PYKKGSTCSA BACU016409/1-178 DSYKVGCAVQ FCPRVSGFET LRNGAHFICN YGPG------ ---------- 201 250 ENSP00000266659/1-266 CPNNDKCLDN LCVNRQRDQV KRYYSVVYPG WPIYPRNRYT SLFLIVNSVI ENSBTAP00000015396/1-272 CPRNDKCLDN LCTNPQRDKV TRYYSTVFPD WPIFPRDRYT SLFLIIIPPI ENSTTRP00000001565/1-266 CPSNDNCLDN LCANPQRDKV TRYYSVVFPD WPIFPRNRYT SLFLIVTPPI bmy_20670T0/1-267 CPSNDNCLDN LCANPQRDKV TRYYSLVFPD WPVLPRNRYI SLFLIVTPPI BACU016409/1-178 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000266659/1-266 LILSVIITI- LVQHKYPNLV LLD ENSBTAP00000015396/1-272 LILSVIIII- WAKGKYPHLF TLK ENSTTRP00000001565/1-266 LILSVIIIS- LVKHKYPHLV LLN bmy_20670T0/1-267 LILSVVIIIS LVKHKYPHLV LLN BACU016409/1-178 ---------- ---------- ---