KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:55:47 2014 Check: 00 .. Name: ENSP00000366549/1-418 Len: 501 Check: 2717 Weight: 1.00 Name: ENSBTAP00000015414/1-420 Len: 501 Check: 3419 Weight: 1.00 Name: bmy_17882T0/1-328 Len: 501 Check: 428 Weight: 1.00 Name: BACU005903/1-454 Len: 501 Check: 8097 Weight: 1.00 Name: ENSTTRP00000008147/1-390 Len: 501 Check: 5833 Weight: 1.00 // 1 50 ENSP00000366549/1-418 MRTKAAGCAE RRPLQPRTEA A-AAPAGRAM PSEYTYVKLR SDCSRPSLQW ENSBTAP00000015414/1-420 MRKKAAGGAE RRPLKPRTEA AAAAPAGRAM PSDHSRMKLR RDCSRPSLQW bmy_17882T0/1-328 ---------- ---------- --------MS PG-------- ADCGASLCAS BACU005903/1-454 ---------- ---------- ---------M PSEYNRVKLK SDCSRPSLQW ENSTTRP00000008147/1-390 ---------- ---------- ---------M PSQYNRVKLK SDCSRPSLQW 51 100 ENSP00000366549/1-418 YTRAQSKMRR PSLLLKDILK CTLLVFGVWI L-YILKLNYT TEECDMKKMH ENSBTAP00000015414/1-420 YTRAQNKMRR PNLLLKDILK CTLLLFGVWI LFYILKLNHT TEECDMKRMP bmy_17882T0/1-328 FQRAQ----- ---------- ---------- ---------- ---------- BACU005903/1-454 YTRAQNKMRR PSLLLKDILK CTLLVFGVWI L-YILKLNYT TEECDTKKMH ENSTTRP00000008147/1-390 YTRAQNKMRR PSLLLKDILK CTLLVFGVWI L-YILKLNYT TEECDMKKVH 101 150 ENSP00000366549/1-418 YVDPDHVKRA QKYAQQVLQK ECRPKFAKTS MALLFEHRYS VDLLPFVQKA ENSBTAP00000015414/1-420 YMDPDRIKRA QQYAQQVLQK ECRPQFAKRS MAQLFGSRYS LDLPPFVTKV bmy_17882T0/1-328 ---------- -QYAQQVLQK ECRPQFAKRS MVQLFRHRYS SDLPPFVTKA BACU005903/1-454 YVDPNRIK-- ---------- -----FAKRS MGQLFRHRYS SDLPPFVTKA ENSTTRP00000008147/1-390 YVDPNRIKRA QQYAQEVLQK ECRPQFAKRS MVQLFRHRYT SDLPPFVTKG 151 200 ENSP00000366549/1-418 PKDSEAESKY DPPFGFRKFS SKVQTLLELL PEHDLPEHLK AKTCRRCVVI ENSBTAP00000015414/1-420 PAESEAEYKY DPPFGFRKFS GKVQTLLELL PEHDFPEHLR AKSCKHCVVI bmy_17882T0/1-328 PAGSEAEYKY NPPFGFRKFS EKVQTLLDLL PEHDFPAHLK AKSCRRCVVI BACU005903/1-454 PAGSEAEYKY DPPFGFRKFS EKVQTLLELL PEHDFPAHLK AKSCRRCVVI ENSTTRP00000008147/1-390 PAGSEAEYKY DPPFGFRKFS EKVQSLLELL PEHDFPAHLK AKSCRRCVVI 201 250 ENSP00000366549/1-418 GSGGILHGLE LGHTLNQFDV VIRLNSAPVE GYSEHVGNKT TIRMTYPEGA ENSBTAP00000015414/1-420 GSGGILHGLE LGHALNQFDV VIRLNNAPVE GYSEHVGNKT TIRMTYPEGA bmy_17882T0/1-328 GSGGILHGLE LGQALNQFDV VIRLNSAPVE GYSEHVGNKT TIRMTYPEGA BACU005903/1-454 GSGGILHGLE LGQALNQFDV VIRLNSAPVE GYSEHVGNKT TIRMTYPEGA ENSTTRP00000008147/1-390 GSGGILHGLE LGRALNQFDV VIRLNSAPVE GYSEHVGNKT TIRMTYPEGA 251 300 ENSP00000366549/1-418 PLSDLEYYSN DLFVAVLFKS VDFNWLQAMV KKETLPFWVR LFFWKQVAEK ENSBTAP00000015414/1-420 PLSDLEYYSS DLFVTVLFKS VDFNWLQAMV KNETLPFWVR LFFWKQVAEK bmy_17882T0/1-328 PLSDLEYYSN DLFVAVLFKS VDFNWLQAMV KNETLPFWVR LFFWKQVAEK BACU005903/1-454 PLSDLEYYSN DLFVAVLFKS VDFNWLQAMV KNETLPFWVR LFFWKQVAEK ENSTTRP00000008147/1-390 PLSDLEYYSN DLFVAVLFKS VDFNWLQAMV KNETLPFWVR LFFWKQVAEK 301 350 ENSP00000366549/1-418 IPLQPKHFRI LNPVIIKETA FDILQYSEPQ SRFWGRDKNV PTIGVIAVVL ENSBTAP00000015414/1-420 IPLQPKQFRI LNPVIIKETA FDILQYSEPQ SRFWGRDKNV PTIGVIAVVL bmy_17882T0/1-328 IPLQPKQFRI LNPVIIKETA FDILQYSEPQ SRFWGRDKNV PTIGVIAVVL BACU005903/1-454 IPLQPKQFRI LNPVIIKETA FDILQYSEPQ SRFWGRDKNV PTIGVIAVVL ENSTTRP00000008147/1-390 IPLQPKQFRI LNPVIIKETA FDILRYSEPQ SRFWGRDKNV PTIGVIAVVL 351 400 ENSP00000366549/1-418 ATHLCDEVSL AGFGYDLNQP RTPLHYFDSQ CMAAMNFQTM HNVTTETKFL ENSBTAP00000015414/1-420 ATHLCDEVSL AGFSYALNQP RTPLHYFDNL CMAAMNFQTM HNVTTETNFL bmy_17882T0/1-328 ATHLCDEVSL AGFGYDLSQP RTPLHYFDNL CMAAMNFQTM HNVTTETGFL BACU005903/1-454 ATHLCDEVSL AGFGYDLSQP RTPLHYFDNL CMAAMNFQTM HNVTTETGFL ENSTTRP00000008147/1-390 ATHLCDEVSL AGFGYDLSQP RTPLHYFDNL CMAAMNFQTM HNVTTETGFL 401 450 ENSP00000366549/1-418 LKLVKEGVVK DLSG------ GIDREF---- ---------- ---------- ENSBTAP00000015414/1-420 LKLVREGVVR DLSG------ GIHSEF---- ---------- ---------- bmy_17882T0/1-328 LKLVREGVVR DLSG------ GIHCEF---- ---------- ---------- BACU005903/1-454 LKLVREGVSP TIASHQQNLT GHQCDVANQP RFTISENSIH PNARSYLHKK ENSTTRP00000008147/1-390 LKLVREGVVR DLSG------ GIHCEF---- ---------- ---------- 451 500 ENSP00000366549/1-418 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015414/1-420 ---------- ---------- ---------- ---------- ---------- bmy_17882T0/1-328 ---------- ---------- ---------- ---------- ---------- BACU005903/1-454 LGQTCRGLDE GPDEEDEHIH NSRWPKVKGM GDLKGMTTQG PYQGEKRVSN ENSTTRP00000008147/1-390 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000366549/1-418 - ENSBTAP00000015414/1-420 - bmy_17882T0/1-328 - BACU005903/1-454 N ENSTTRP00000008147/1-390 -