KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:55:50 2014 Check: 00 .. Name: ENSTTRP00000013804/1-961 Len: 985 Check: 3888 Weight: 1.00 Name: BACU002190/1-832 Len: 985 Check: 9377 Weight: 1.00 Name: ENSP00000222145/1-963 Len: 985 Check: 9613 Weight: 1.00 Name: bmy_06417T0/1-749 Len: 985 Check: 6747 Weight: 1.00 Name: ENSBTAP00000015431/1-963 Len: 985 Check: 8553 Weight: 1.00 // 1 50 ENSTTRP00000013804/1-961 MLSGERKEGG SPRFGKLHLP VGLWINSPRK QLAKL-GRRW PSAVSVKSSS BACU002190/1-832 ---------- ---MGPRRLP L--------- LVAALAGCLL PARGCVMCDP ENSP00000222145/1-963 MLSGERKEGG SPRFGKLHLP VGLWINSPRK QLAKL-GRRW PSAASVKSSS bmy_06417T0/1-749 MLSGERKEGG SPRFGKLHLP VGLWINSPRK QLAKL-GRRW PSAVSVK--- ENSBTAP00000015431/1-963 MLSGERKEGG SPRFGKLHLP VGLWINSPRK QLAKL-GRRW PSAASVKSSS 51 100 ENSTTRP00000013804/1-961 SDTGSRSSEP LPPPPPHVEL RRVGAVKAAG GASGSRAKRI SQLFRGS--G BACU002190/1-832 KVVEALNSLE TDYLPGHLEA KHHKNVM--- ----KRVKQA VEAFKDLPID ENSP00000222145/1-963 SDTGSRSSEP LPPPPPHVEL RRVGAVKAAG GASGSRAKRI SQLFRGSGTG bmy_06417T0/1-749 ---------- --------EP ERVGC----- ---------- ---------- ENSBTAP00000015431/1-963 SDTGSRSSEP LPPPPPHVEL RRVGAVKAAG GASGSRAKRI SQLFRGSGTG 101 150 ENSTTRP00000013804/1-961 TTGSGGAGAP GTPGAAQRWA SEKKLPELAA GVAPEPPLAA RATAPPGVLK BACU002190/1-832 EDSYMGVVDE ATLEKAA-WS LLKDLKRI-- -------MDS DVKGELFVKE ENSP00000222145/1-963 TTGSSGAGGP GTPGGAQRWA SEKKLPELAA GVAPEPPLAT RATAPPGVLK bmy_06417T0/1-749 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015431/1-963 TTGSGGAGGP GTPGAAQRWA SEKKLPELAA GVAPEPPLAT RATAPPGVLK 151 200 ENSTTRP00000013804/1-961 IFGAGLASGA NYKSVLATAR STARELVAEA LERYGLAGSP GSGPGESSCV BACU002190/1-832 LFWMLRLAKD NFASYAAQFQ KAERKVKVHQ ME-------- ---------- ENSP00000222145/1-963 IFGAGLASGA NYKSVLATAR STARELVAEA LERYGLAGSP GGGPGESSCV bmy_06417T0/1-749 ---------- ---------- ---------- ---------- ------SSC- ENSBTAP00000015431/1-963 IFGAGLASGA NYKSVLATAR STARELVAEA LERYGLAGSP GSGPGESSCV 201 250 ENSTTRP00000013804/1-961 DAFALCDALG RPAAGTIGSG E----WRAEH LRVLGDSERP LLVQELWRAR BACU002190/1-832 DMILDCELNW HKISQGLTDY SFYRVWGNHS ETLMSKGKEP TLTKTMVRPK ENSP00000222145/1-963 DAFALCDALG RPAAAGVGSG E----WRAEH LRVLGDSERP LLVQELWRAR bmy_06417T0/1-749 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015431/1-963 DAFALCDALG RPAAGAVGSG E----WRAEH LRVLGDSERP LLVQELWRAR 251 300 ENSTTRP00000013804/1-961 PGWARRFELR GREEARR--- -LEQEAFGAA DGDGTGAPSW RPQKNRSRAA BACU002190/1-832 DAGTYRCELG SVQSSPATII YFHVTVLPKR IVEEIPSPN- --TETEDEVA ENSP00000222145/1-963 PGWARRFELR GREEARR--- -LEQEAFGAA DSEGTGAPSW RPQKNRSRAA bmy_06417T0/1-749 PEWA------ ---------- ---------- ---STGAPSW RSQKNRSRAA ENSBTAP00000015431/1-963 PGWARRFELR GREEARR--- -LEQEAFGAA DGDGTGAPSW RPQKNRSRAA 301 350 ENSTTRP00000013804/1-961 SGGAALASPG PGSGSGPSAG SGGKERSENL ---------- ---XXXXXXX BACU002190/1-832 PGEVTLDRPQ TATTLQSQSP KPEKVLRSRL VGPLIWGFVV LIASVATAVS ENSP00000222145/1-963 SGGAALASPG PGTGSGAPAG SGGKERSENL ---------- ---SLRRSVS bmy_06417T0/1-749 SGGAALASPG PGSGSGPSAG SGGKERSENL ---------- ---SLRRSVS ENSBTAP00000015431/1-963 SGGAALASPG PGSGSGTPAG SGGKERSENL ---------- ---SLRRSVS 351 400 ENSTTRP00000013804/1-961 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU002190/1-832 ELSLQGRRRR QQERRQQALS MAPGAADAQI GPVDPGDFDQ LTQCLIQAPS ENSP00000222145/1-963 ELSLQGRRRR QQERRQQALS MAPGAADAQI GTADPGDFDQ LTQCLIQAPS bmy_06417T0/1-749 ELSLQGRRRR QQERRQQALS MAPGAADAQI GPVDPGDFDQ LTQCLIQAPS ENSBTAP00000015431/1-963 ELSLQGRRRR QQERRQQALS MAPGAADAQI GPVDPGDFDQ LTQCLIQAPS 401 450 ENSTTRP00000013804/1-961 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU002190/1-832 NRPYFLLLQG YQDAQDFVVY VMTREQHVFG RGGNSSARGG SPAPYVDTFL ENSP00000222145/1-963 NRPYFLLLQG YQDAQDFVVY VMTREQHVFG RGGNSSGRGG SPAPYVDTFL bmy_06417T0/1-749 NRPYFLLLQG YQDAQDFVVY VMTREQHVFG RGGNSSARGG SPAPYVDTFL ENSBTAP00000015431/1-963 NRPYFLLLQG YQDAQDFVVY VMTREQHVFG RGGNSSARGG SPAPYVDTFL 451 500 ENSTTRP00000013804/1-961 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU002190/1-832 NAPDILPRHC TVRAGPEPPA M--------- ---------- ---------- ENSP00000222145/1-963 NAPDILPRHC TVRAGPEHPA MVRPSRGAPV THNGCLLLRE AELHPGDLLG bmy_06417T0/1-749 NAPDILPRHC TVRAGPEPPA MVRPSRGAPV THNGCLLLRE TELHPGDLLG ENSBTAP00000015431/1-963 NAPDILPRHC TVRAGPEPPA MVRPSRGAPV THNGCLLLRE AELHPGDLLG 501 550 ENSTTRP00000013804/1-961 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU002190/1-832 ---------- ---------- ---------- ---------- ---------- ENSP00000222145/1-963 LGEHFLFMYK DPRTGGSGPA RPPWLPARPG ATPPGPGWAF SCRLCGRGLQ bmy_06417T0/1-749 LGEHFLFMYK DPRAGGAGPA RPPWLPARPG ATPPGPGWAF SCRLCGRGLQ ENSBTAP00000015431/1-963 LGEHFLFMYK DPRAGGSGPA RPPWLPARPG ATPPGPGWAF SCRLCGRGLQ 551 600 ENSTTRP00000013804/1-961 XXXXXXXXXX XXXXXXXHFR PREEEALLGE IVRAAAAGAG DLPPLGAATL BACU002190/1-832 ---------- ----PVLRFR PREEEALLGE IVRAAAAGAG DLPPLGPATL ENSP00000222145/1-963 ERGEALAAYL DGREPVLRFR PREEEALLGE IVRAAAAGSG DLPPLGPATL bmy_06417T0/1-749 ERGEALAAYL DGREPVLRFR PREEEALLGE IVRAAAAGAG DLPPLGPATL ENSBTAP00000015431/1-963 ERGEALAAYL DGREPVLRFR PREEEALLGE IVRTAAAGAG DLPPLGPATL 601 650 ENSTTRP00000013804/1-961 LALCVQHSAR ELELGHLPRL LGRLARLIKE AVWEKIKEIG DRQPENHPEG BACU002190/1-832 LALCVQHSAR ELELGHLPRL LGRLARLIKE AVWEKIKEIG DRQPENHPEG ENSP00000222145/1-963 LALCVQHSAR ELELGHLPRL LGRLARLIKE AVWEKIKEIG DRQPENHPEG bmy_06417T0/1-749 LALCVQHSAR ELELGHLPRL LGRLARLIKE AVWEKIKEIG DRQPENHPEG ENSBTAP00000015431/1-963 LALCVQHSAR ELELGHLPRL LGRLARLIKE TVWEKIKEIG DRQPENHPEG 651 700 ENSTTRP00000013804/1-961 VPEVPLTPEA VSVELRPLML WMANTTELLS FVQEKVLEME KEADQEDPQL BACU002190/1-832 VPEVPLTPEA VSVELRPLML WMANTTELLS FVQEKVLEME KEADQEDPQL ENSP00000222145/1-963 VPEVPLTPEA VSVELRPLML WMANTTELLS FVQEKVLEME KEADQEDPQL bmy_06417T0/1-749 VPEVPLTPEA VSVELRPLML WMANTTELLS FVQEKVLEME KEADQEDPQL ENSBTAP00000015431/1-963 VPEVPLTPET VSVELRPLML WMANTTELLS FVQEKVLEME KEADQEDPQL 701 750 ENSTTRP00000013804/1-961 CNDLELCDEA MALLDEVIMC TFQQSVYYLT KTLYSTLPAL LDSNPFTAGA BACU002190/1-832 CNDLELCDEA MALLDEVIMC TFQQSVYYLT KTLYSTLPAL LDSNPFTAGA ENSP00000222145/1-963 CNDLELCDEA MALLDEVIMC TFQQSVYYLT KTLYSTLPAL LDSNPFTAGA bmy_06417T0/1-749 CNDLELCDEA MALLDEVIMC TFQQSVYYLT KTLYSTLPAL LDSNPFTAGA ENSBTAP00000015431/1-963 CNDLELCDEA MALLDEVIMC TFQQSVYYLT KTLYSTLPAL LDSNPFTAGA 751 800 ENSTTRP00000013804/1-961 ELPGPGAELG AMPPGLRPTL GVFQAALELT SQCELHPDLV SQTFGYLFFF BACU002190/1-832 ELPGPGAELG AMPPGLRPTL GVFQAALELT SQCELHPDLV SQTFGYLFFF ENSP00000222145/1-963 ELPGPGAELG AMPPGLRPTL GVFQAALELT SQCELHPDLV SQTFGYLFFF bmy_06417T0/1-749 ELPGPGAELG AMPPGLRPTL GVFQAALELT SQCELHPDLV SQTFGYLFFF ENSBTAP00000015431/1-963 ELPGPGAELG AMPPGLKPTL GVFQAALELT SQCELHPDLV SQTFGYLFFF 801 850 ENSTTRP00000013804/1-961 SNASLLNSLM ERGQGRPFYQ WSRAVQIRTN LDLVLDWLQG AGLGDIATEF BACU002190/1-832 SNASLLNSLM ERGQGRPFYQ WSRAVQIRTN LDLVLDWLQG AGLGDIATEF ENSP00000222145/1-963 SNASLLNSLM ERGQGRPFYQ WSRAVQIRTN LDLVLDWLQG AGLGDIATEF bmy_06417T0/1-749 SNASLLNSLM ERGQGRPFYQ WSRAVQIRTN LDLVLDWLQG AGLGDIATEF ENSBTAP00000015431/1-963 SNASLLNSLM ERGQGRPFYQ WSRAVQIRTN LDLVLDWLQG AGLGDIATEF 851 900 ENSTTRP00000013804/1-961 FRKLSIAVNL LCVPRTSLLK ASWSSLRTDH PTLTPAQLHH LLSHYQLGPG BACU002190/1-832 FRKLSIAVNL LCVPRTSLLK ASWSSLRTDH PTLTPAQLHH LLSHYQLGPG ENSP00000222145/1-963 FRKLSMAVNL LCVPRTSLLK ASWSSLRTDH PTLTPAQLHH LLSHYQLGPG bmy_06417T0/1-749 FRKLSIAVNL LCVPRTSLLK ASWSSLRTDH PTLTPAQLHH LLSHYQLGPG ENSBTAP00000015431/1-963 FRKLSIAVNL LCVPRTSLLK ASWSSLRTDH PTLTPAQLHH LLSHYQLGPG 901 950 ENSTTRP00000013804/1-961 RGPPPAWDPP PAERDAVDTG DIFESFSSHP PLILPLGSSR LSLTGPVTDD BACU002190/1-832 RGPPPAWDPP PAERDAVDTG DIFESFSSHP PLILPLGSSR LSLTGPVTDD ENSP00000222145/1-963 RGPPAAWDPP PAEREAVDTG DIFESFSSHP PLILPLGSSR LRLTGPVTDD bmy_06417T0/1-749 RGPPPAWDPP PAERDAVDTG DIFESFSSHP PLILPLGSSR LSLTGPVTDD ENSBTAP00000015431/1-963 RGPPPAWDPP PAERDAVDTG DIFESFSSHP PLILPLGSSR LSLTGPVTDD 951 1000 ENSTTRP00000013804/1-961 ALHRELRRLR RLLWDLEQQE LPANHRHGPP VATPP BACU002190/1-832 ALHRELRRLR RLLWDLEQQE LPANHRHGPP VATPP ENSP00000222145/1-963 ALHRELRRLR RLLWDLEQQE LPANYRHGPP VATSP bmy_06417T0/1-749 ALHRELRRLR RLLWDLEQQE LPANHRHGPP VATPP ENSBTAP00000015431/1-963 ALHRELRRLR RLLWDLEQQE LPANHRHGPP MATPP