KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:55:54 2014 Check: 00 .. Name: ENSP00000275493/1-1210 Len: 1220 Check: 1602 Weight: 1.00 Name: bmy_08127T0/1-727 Len: 1220 Check: 2991 Weight: 1.00 Name: ENSTTRP00000016375/1-1211 Len: 1220 Check: 6447 Weight: 1.00 Name: ENSBTAP00000015445/1-1185 Len: 1220 Check: 8645 Weight: 1.00 Name: BACU012570/1-1149 Len: 1220 Check: 2962 Weight: 1.00 // 1 50 ENSP00000275493/1-1210 MRPSGTAGAA --LLALLAAL CPASRALEEK KVCQGTSNKL TQLGTFEDHF bmy_08127T0/1-727 MPPLSSPGLV PXAVLLFYLA FHVIPFFLLF PVCQGTSNKL TQLGTFEDHF ENSTTRP00000016375/1-1211 MRRSEAGRAV --LLALLAAH FQASPALEEK KVCQGTSNKL TQLGTFEDHF ENSBTAP00000015445/1-1185 ---------- --------MK KHEL------ -LCQGTSNKL TQLGTFEDHF BACU012570/1-1149 -------RFI --LVLLFYLA FHVIPFFLLF PVCQGTSNKL TQLGTFEDHF 51 100 ENSP00000275493/1-1210 LSLQRMFNNC EVVLGNLEIT YVQRNYDLSF LKTIQEVAGY VLIALNTVER bmy_08127T0/1-727 LSLQRMFNNC EVVLGNLEIT YMQSSYNLSF LKTIQEVAGY VLIALNTVEK ENSTTRP00000016375/1-1211 LSLQRMFNNC EVVLGNLEIT YMQSSYNLSF LKTIQEVAGY VLIALNTVET ENSBTAP00000015445/1-1185 LSLQRMFNNC EVVLGNLEIT YMQSSYNLSF LKTIQEVAGY VLIALNTVEK BACU012570/1-1149 VSLQRMFNNC EVVLGNLEIT YMQSSYNLSF LKTIQEVAGY VLIALNTVEK 101 150 ENSP00000275493/1-1210 IPLENLQIIR GNMYYENSYA LAVLSNYDAN KTGLKELPMR NLQEILHGAV bmy_08127T0/1-727 IPLEKLQIIR GNVLYENTHA LAVLSNYGAN KTGLRELPMR NLQEILQGAV ENSTTRP00000016375/1-1211 IPLEKLQIIR GNVLYENTHA LAVLSNYGAN KTGLRELPMR NLQEILQGAV ENSBTAP00000015445/1-1185 IPLENLQIIR GNVLYENTHA LAVLSNYGAN KTGLRELPLR NLQEILQGAV BACU012570/1-1149 IPLEKLQIIR GNVLYENTHA LAVLSNYGAN KTGLRELPMR NLQEILQGAV 151 200 ENSP00000275493/1-1210 RFSNNPALCN VESIQWRDIV SSDFLSNMSM DFQNHLGSCQ KCDPSCPNGS bmy_08127T0/1-727 RFSNNPGLCN METVQWRDIV HTDFLSNMSI ELQSQLSKCP KCDPVCLNGS ENSTTRP00000016375/1-1211 RFSNNPVLCN MDTVQWRDIV NADFLSNMSI EFQSQLSRCP KCDPVCLNGS ENSBTAP00000015445/1-1185 RFSNNPVLCN VETIQWRDIV NPDFLSNMTG DFQNQQGNCP KCDPACLNRS BACU012570/1-1149 RFSNNPVLCN METVQWRDIV HADFLSNMSI EFQNQLS--- ---------- 201 250 ENSP00000275493/1-1210 CWGAGEENCQ KLTKIICAQQ CSGRCRGKSP SDCCHNQCAA GCTGPRESDC bmy_08127T0/1-727 CWGAGKENCQ KMTKVICAQQ CSGRCRGRSP SDCCHSQCAA GCTGPRESDC ENSTTRP00000016375/1-1211 CWGTGKENCQ KLTKVICAQQ CSGRCRGRSP SDCCHSQCAA GCTGPRESDC ENSBTAP00000015445/1-1185 CWGAGEENCQ KLTKIICAQQ CSGRCRGRSP SDCCHNQCAA GCTGPRESDC BACU012570/1-1149 ---------- KLTKVICAQQ CSGRCRGRSP SDCCHSQCAA GCTGPRESDC 251 300 ENSP00000275493/1-1210 LVCRKFRDEA TCKDTCPPLM LYNPTTYQMD VNPEGKYSFG ATCVKKCPRN bmy_08127T0/1-727 LVCRRFRDEA TCKDTCPPPM LYDPTTYEMK VNPLGKYSFG ATCVRKCPRN ENSTTRP00000016375/1-1211 LVCRRFRDGA TCKDTCPPLM LYDPTTYEMK VNPLGKYSFG ATCVRKCPRN ENSBTAP00000015445/1-1185 LVCRRFRDEA TCKDTCPPLM LYDPTTYEMK VNPLGKYSFG ATCVKKCPRN BACU012570/1-1149 LVCRRFRDEA TCKDTCPPLM LYDPTTYEMK VNPLGKYSFG ATCVRKCPRN 301 350 ENSP00000275493/1-1210 YVVTDHGSCV RACGADSYEM EEDGVRKCKK CEGPCRK--- ----VCNGIG bmy_08127T0/1-727 YVVTDHGSCV RACSSDSQEV EEDGVRKCKK CDGPCGKGGK LPSAVCNGIG ENSTTRP00000016375/1-1211 YVVTDHGSCV RACSSDSQEV EEDGVRKCKK CDGPCGK--- ----VCNGIG ENSBTAP00000015445/1-1185 YVVTDHGSCV RACSSDSQEV EEDGVRKCKK CDGPCGK--- ----VCNGIG BACU012570/1-1149 YVVTDHGSCV RACSSDSQEV EEDGVRKCKK CDGPCGK--- ----VCNGIG 351 400 ENSP00000275493/1-1210 IGEFKDSLSI NATNIKHFKN CTSISGDLHI LPVAFRGDSF THTPPLDPQE bmy_08127T0/1-727 IGEFKDTLSI NATNIKHFRN CTSISGDLHI LPVAFRGDSF TRTPRLDPKE ENSTTRP00000016375/1-1211 IGEFKDTLSI NATNIKHFRN CTSISGDLHI LPVAFKGDSF TRTPPLDPKE ENSBTAP00000015445/1-1185 IGEFKDTLSI NATNIKHFRN CTSISGDLHI LPVAFRGDSF TRTAPLDPKE BACU012570/1-1149 IGEFKDTLSI NATNIKHFRN CTSISGDLHI LPVAFRGDSF TRTPPLDPKE 401 450 ENSP00000275493/1-1210 LDILKTVKEI TGFLLIQAWP ENRTDLHAFE NLEIIRGRTK QHGQFSLAVV bmy_08127T0/1-727 LDILKTVKEI T--------- ---------- -----VSPAL ESGQFSLAVV ENSTTRP00000016375/1-1211 LDILKTVKEI TGFLLIQAWP ANRTGLHAFE NLEIIRGRTK QHGQFSLAVV ENSBTAP00000015445/1-1185 LDILRTVKEI TGFLLIQAWP ENRTDLHAFE NLEIIRGRTK QHGQFSLAVV BACU012570/1-1149 LDILKTVKEI TGFLLIQAWP ANRTGLHAFE NLEIIRGRTK QHGQFSLAVV 451 500 ENSP00000275493/1-1210 SLNITSLGLR SLKEISDGDV IISGNKNLCY ANTINWKKLF GTSGQKTKII bmy_08127T0/1-727 GLDIMSLGLR SLKEISDGDV IISGNRKLCY ADTINWKKLF GTSSQKTKII ENSTTRP00000016375/1-1211 GLDITSLGLR SLKEISDGDV IISGNRKLCY ADTINWKKLF GTSSQKTKIT ENSBTAP00000015445/1-1185 GLDITSLGLR SLKEISDGDV IISGNRNLCY ADTIRWKKLF GTSTQKTKIL BACU012570/1-1149 GLDIMSLGLR SLKEISDGDV IISGNRKLCY ADTINWKKLF GTSNQKTKII 501 550 ENSP00000275493/1-1210 SNRGENSCKA TGQVCHALCS PEGCWGPEPR DCVSCRNVSR GRECVDKCNL bmy_08127T0/1-727 NNRSEKECKA MGHVCNPLCS SEGCWGPKPK DCVSCRNFSR GKECVEKCNI ENSTTRP00000016375/1-1211 NNRSEKECKA MGHVCNPLCS SEGCWGPKPE DCMSCRNFSR GRECVEKCNV ENSBTAP00000015445/1-1185 NNRSEKQCKA AGHICHPLCS SEGCWGPGPK YCMSCQNFSR GKECVGKCNI BACU012570/1-1149 NNRSEKECKA TGHVCNPLCS SEGCWGPKPK DCVSCRNFSR GKECVEKCNI 551 600 ENSP00000275493/1-1210 LEGEPREFVE NSECIQCHPE CLPQAMNITC TGRGPDNCIQ CAHYIDGPHC bmy_08127T0/1-727 LKGEPREFVE NSECVQCHPE CLPQAMNVTC TGH-----VR SMFDVT-PYT ENSTTRP00000016375/1-1211 LKGEPREFVE NSECVQCHPE CLPQAMNVTC TGHGPGSCVK CAHNIDGPHC ENSBTAP00000015445/1-1185 LEGEPREFVE NSECVQCHPE CLPQAMNVTC TGRGPGNCVK CAHYIDGPHC BACU012570/1-1149 LKGEPREFVE NSECVQCHPE CLPQAMNVTC TGHGPGSCVK CAHNIDGPHC 601 650 ENSP00000275493/1-1210 VKTCPAGVMG ENNTLVWKYA DAGHVCHLCH PNCTYGCTGP GLEGCPTNGP bmy_08127T0/1-727 ---------- ---------- ---------- ---------- ---------P ENSTTRP00000016375/1-1211 VKTCPAGVTG ENSTLIWKFA DANHVCHLCH PSCTYGCAGP GSEGCAVSGP ENSBTAP00000015445/1-1185 VKTCPAGVAG ENGTLIWKFA DANHVCLLCH PNCTYGCEGP GLEGCPQKGP BACU012570/1-1149 VKTCPAGVTG ENSTLIWKYA DANHMCHLCH PSCTY----- --------GP 651 700 ENSP00000275493/1-1210 KIPSIATGMV GALLLLLVVA LGIGLFMRRR HIVRKRTLRR LLQERELVEP bmy_08127T0/1-727 RIPSIATGIV GALLLAVVLA LGVGLFLRRR RIVRKRTLRR LLQERE---- ENSTTRP00000016375/1-1211 RIPSIATGMV GALLLALVLA LGVGLFLRRR RIVRKRTLRR LLQERELVEP ENSBTAP00000015445/1-1185 KIPSIATGIV GGLLLVVVLA LSVGLFMRRR HIVRKRTLRR LLQERELVEP BACU012570/1-1149 RIPSIATGIV GALLLALVLA LGVGLFLRRR RIVRKRTLRR LLQERELVEP 701 750 ENSP00000275493/1-1210 LTPSGEAPNQ ALLRILKETE FKKIKVLGSG AFGTVYKGLW IPEGEKVKIP bmy_08127T0/1-727 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016375/1-1211 LTPSGEAPNQ ALLRILKETE LKKVKVLGSG AFGTVYKGLW IPEGEKVKIP ENSBTAP00000015445/1-1185 LTPSGEAPNQ ALLRILKETE FKKVKVLGSG AFGTVYKGLW IPEGEKVKIP BACU012570/1-1149 LTPSGEAPNQ ALLRILKETE LKKVKVLGSG AFGTVYKGLW IPEGEKVKIP 751 800 ENSP00000275493/1-1210 VAIKELREAT SPKANKEILD EAYVMASVDN PHVCRL-LGI CLTSTVQLIT bmy_08127T0/1-727 ---------- -PASVSDNVS EARGPGKRDP P--------- ---------- ENSTTRP00000016375/1-1211 VAIKELREAT SPKANKEILD XXXXXXXXXX XXXXXXSLGI CLTSTVQLIT ENSBTAP00000015445/1-1185 VAIKELREAT SPKANKEILD EAYVMASVDN PHVCRL-LGI CLTSTVQLIT BACU012570/1-1149 VAIKELREAT SPKANKEILD EAYVMASVDN PHVCRL-LGI CLTSTVQLVT 801 850 ENSP00000275493/1-1210 QLMPFGCLLD YVREHKDNIG SQYLLNWCVQ IAKGMNYLED RRLVHRDLAA bmy_08127T0/1-727 QLQHHGC--- ---------- ---------- ---------- ---------- ENSTTRP00000016375/1-1211 QLMLFGCLLD YVREHKDNIG SQHLLNWCVQ IAKGMNYLED RRLVHRDLAA ENSBTAP00000015445/1-1185 QLMPFGCLLD YVREHKDNVG SQYLLNWCVQ IAKGMNYLED RRLVHRDLAA BACU012570/1-1149 QLMPFGCLLD YVREHKDNIG SQHLLNWCVQ IAKGMNYLED RRLVHRDLAA 851 900 ENSP00000275493/1-1210 RNVLVKTPQH VKITDFGLAK LLGAEEKEYH AEGGKVPIKW MALESILHRI bmy_08127T0/1-727 -----EGPDR S----FGLG- ---------- ---------- ---------- ENSTTRP00000016375/1-1211 RNVLVKTPQH VKITDFGLAK LLGAEEKEYH AEGGKVPIKW MALESILHRI ENSBTAP00000015445/1-1185 RNVLVKTPQH VKITDFGLAK LLGAEEKEYH AEGGKVPIKW MALESILHRI BACU012570/1-1149 RNVLVKTPQH VKITDFGLAK LLGAEEKEYH AEGGKVPIKW MALESILHRI 901 950 ENSP00000275493/1-1210 YTHQSDVWSY GVTVWELMTF GSKPYDGIPA SEISSILEKG ERLPQPPICT bmy_08127T0/1-727 ---------- -------MTS G--------- ---------- ---------- ENSTTRP00000016375/1-1211 YTHQSDVWSY GVTVWELMTF GSKPYDGIPA SEISTVLEKG ERLPQPPICT ENSBTAP00000015445/1-1185 YTHQSDVWSY GVTVWELMTF GSKPYDGIPA SEISTVLEKG ERLPQPPICT BACU012570/1-1149 YTHQSDVWSY GVTVWELMTF GSKPYDGIPA SEISTVLEKG ERLPQPPICT 951 1000 ENSP00000275493/1-1210 IDVYMIMVKC WMIDADSRPK FRELIIEFSK MARDPQRYLV IQGDERMHLP bmy_08127T0/1-727 ---------- ---------- ---------- ------KSMQ IRGD------ ENSTTRP00000016375/1-1211 IDVYMIMVKC WMIDADSRPK FRELIIEFSK MARDPQRYLV IQGDERMHLP ENSBTAP00000015445/1-1185 IDVYMIMVKC WMIDADSRPK FRELILEFSK MARDPQRYLV IQGDERMHLP BACU012570/1-1149 IDVYMIMVKC WMIDADSRPK FRELIIEFSK MARDPQRYLV IQGDERMHLP 1001 1050 ENSP00000275493/1-1210 SPTDSNFYRA LMDEEDMDDV VDADEYLIPQ QGFFSSPSTS RTPLLSSLSA bmy_08127T0/1-727 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016375/1-1211 SPTDSNFYRA LMDEEDMQDV VDADEYLIPQ QGFFHSPASS RTPLLSSLSS ENSBTAP00000015445/1-1185 SPTDSNFYRA LMDEEDMEDV VDADEYLVPQ QGFFHSPTTS RTPLLSSLST BACU012570/1-1149 SPTDSNFYRT LMDEEDMEDV VDADEYLIPQ QGFFHSPTTS RTPLLSSL-- 1051 1100 ENSP00000275493/1-1210 TSNNSTVACI DRNGLQSCPI KEDSFLQRYS SDPTGALTED SIDDTFLPVP bmy_08127T0/1-727 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016375/1-1211 TSNTPTVACG DRNGQQSYPL QEDSFLQRYS SDPTGXXXXX XXXXXXXXXX ENSBTAP00000015445/1-1185 SSNTPTVTCV DRNG--SYPL KEDSFLQRYS SDPTGALIED SMDDTFLPVP BACU012570/1-1149 ---------- ------SYPL KEDSFLQRYS SDPTGTLTED SIDDAFLPAA 1101 1150 ENSP00000275493/1-1210 EYINQSVPKR PAGSVQNPVY HNQPLNPAPS RDPHYQDPHS TAVGNPEYLN bmy_08127T0/1-727 THLEANLKKR S--------- ---------- ---------- ---------- ENSTTRP00000016375/1-1211 XYVNQSIPKR PAGSVQNPVY HNQPLNPAPG RDPHYQNSHS NAVDSPEYLN ENSBTAP00000015445/1-1185 EYVNQSVPKR PAGSVQNPVY HNQPLYPAPG RDPQYQNSLS NAVDNPEYLN BACU012570/1-1149 EYINQSIPKR PAGSVQNPVY HNQPLNPAPG RDPHYQNSHS NAVGNPEYLN 1151 1200 ENSP00000275493/1-1210 TVQPTCVNST FDSPAHWAQK GSHQISLDNP DYQQDFFPKE AKPNGIFKGS bmy_08127T0/1-727 ---------- ---------- GGHQINLDNP DYQQAFFPKE AKSNGIFKGP ENSTTRP00000016375/1-1211 TTHPACSNGV LDGPALWAQK GGHQINLDNP DYQQAFLPKE AKSNGIFKGS ENSBTAP00000015445/1-1185 TTHPACINGV LDGPALWAQK GSHQFSLDNP DYQQAFFPKE AKSNGIFKGP BACU012570/1-1149 TAHPACASGV LDGPALWAQK GGHQINLDNP DYQQAFLPKD AKSNGIFKGP 1201 1250 ENSP00000275493/1-1210 TAENAEYLRV APQSSEFIGA bmy_08127T0/1-727 AAENAEYLTA APAGSDLTGA ENSTTRP00000016375/1-1211 AAENAEYLRV APAGSDLTGA ENSBTAP00000015445/1-1185 AAENAEYLRA APAGSDFTGA BACU012570/1-1149 AAENAEYLRA APAGSDLTGA