KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:55:56 2014 Check: 00 .. Name: ENSTTRP00000014159/1-340 Len: 561 Check: 1889 Weight: 1.00 Name: bmy_06661T0/1-413 Len: 561 Check: 5185 Weight: 1.00 Name: ENSBTAP00000015459/1-314 Len: 561 Check: 2892 Weight: 1.00 Name: ENSP00000324856/1-433 Len: 561 Check: 5021 Weight: 1.00 Name: BACU006524/1-561 Len: 561 Check: 7048 Weight: 1.00 // 1 50 ENSTTRP00000014159/1-340 ---------- ---------- ---------- ---------- ---------- bmy_06661T0/1-413 MEVADPQQLG MFTEGELMSV GMDTFIHRID STEVIYQPRR KRAKLIGKYL ENSBTAP00000015459/1-314 ---------- ---------- ---------- ---------- ---------- ENSP00000324856/1-433 MEVVDPQQLG MFTEGELMSV GMDTFIHRID STEVIYQPRR KRAKLIGKYL BACU006524/1-561 MEVADPQQLG MFTEGELMSV GMDTFIHRID STEVIYQPRR KRAKLIGKYL 51 100 ENSTTRP00000014159/1-340 ---------- ---------- ---------- ---------- -------EIQ bmy_06661T0/1-413 MGDLLGEGSY GKVKEVLDSE TLCRRAVKIL KKKKLRRIPN GEANVKKEIQ ENSBTAP00000015459/1-314 ---------- ---------- ---------- ---------- ---------- ENSP00000324856/1-433 MGDLLGEGSY GKVKEVLDSE TLCRRAVKIL KKKKLRRIPN GEANVKKEIQ BACU006524/1-561 MGDLLGEGSY GKVKEVLDSE TLCRRAVKIL KKKKLRRIPN GEANVKKEIQ 101 150 ENSTTRP00000014159/1-340 LLRRLRHKNV IQLVDVLYNE EKQKT----- ---------- ---------- bmy_06661T0/1-413 LLRRLRHKNV IQLVDVLYNE EKQKM----- ---------- ---------- ENSBTAP00000015459/1-314 ---------- ---------- ---------- ---------- ---------- ENSP00000324856/1-433 LLRRLRHKNV IQLVDVLYNE EKQKM----- ---------- ---------- BACU006524/1-561 LLRRLRHKNV IQLVDVLYNE EKQKIYPFGA RGARCSLSAA DLGAGAPLQR 151 200 ENSTTRP00000014159/1-340 ---------- ---------- ---------- ---------- ---------- bmy_06661T0/1-413 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015459/1-314 ---------- ---------- ---------- ---------- ---------- ENSP00000324856/1-433 ---------- ---------- ---------- ---------- ---------- BACU006524/1-561 VPTGGAAGCG LVLRLDLLFS CGAGALLSAW SLERGRFPGF CLGAVRPGLW 201 250 ENSTTRP00000014159/1-340 ---------- ---------Y MVMEYCVCGM QEMLDSVPEK RFPVCQAH-Y bmy_06661T0/1-413 ---------- ---------Y MVMEYCVCGM QEMLDSVPEK RFPVCQAHGY ENSBTAP00000015459/1-314 ---------- --------TY MVMEYCVCGM QEMLDSVPEK RFPVCQAHGY ENSP00000324856/1-433 ---------- ---------Y MVMEYCVCGM QEMLDSVPEK RFPVCQAHGY BACU006524/1-561 RMHGGRDGEC VTAHCRCCTY MVMEYCVCGM QEMLDSVPEK RFPVCQAHGY 251 300 ENSTTRP00000014159/1-340 FCQLVHGLEY LHSQGIVHKD IKLGHLLLTT GGTLKISDLG VAE------- bmy_06661T0/1-413 FCQLVDGLEY LHSQGIVHKD IKPGNLLLTT GGTLKISDLG VAE------- ENSBTAP00000015459/1-314 FCQLVDGLEY LHSQGIVHKD IKPGNLLLTT GGTLKISDLG VAE------- ENSP00000324856/1-433 FCQLIDGLEY LHSQGIVHKD IKPGNLLLTT GGTLKISDLG VAE------- BACU006524/1-561 FCQLVDGLEY LHSQGIVHKD IKPGNLLLTT GGTLKISDLG VAEAGAPPPS 301 350 ENSTTRP00000014159/1-340 ---------- ---------- --ALHPFAED DTCRTSQGSP AFQPPEIANG bmy_06661T0/1-413 ---------- ---------- --ALHPFAED DTCRTSQGSP AFQPPEIANG ENSBTAP00000015459/1-314 ---------- ---------- --ALHPFAED DTCRTSQGSP AFQPPEIANG ENSP00000324856/1-433 ---------- ---------- --ALHPFAAD DTCRTSQGSP AFQPPEIANG BACU006524/1-561 RTQGGVPARR GPLPEGCLVL LQALHPFAED DTCRTSQGSP AFQPPEIANG 351 400 ENSTTRP00000014159/1-340 LDTFSGFKVD IWSAGVTLXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06661T0/1-413 LDTFSGFKVD IWSAGVTLYN ITTGLYPFEG DNIYKLFENI GKGDYTIPGD ENSBTAP00000015459/1-314 LDTFSGFKVD IWSAGVTLYN ITTGLYPFEG DNIYKLFENI GKGDYTIPGD ENSP00000324856/1-433 LDTFSGFKVD IWSAGVTLYN ITTGLYPFEG DNIYKLFENI GKGSYAIPGD BACU006524/1-561 LDTFSGFKVD IWSAGVTLYN ITTGLYPFEG DNIYKLFENI GKGDYTIPGD 401 450 ENSTTRP00000014159/1-340 XXXXXXXXXX XMLEYEPAKR FSIQQIRQHS WFRKKHPPAE EPVPIPPSAD bmy_06661T0/1-413 CGPPLSDLLK GMLEYEPAKR FSIQQIRQHS WFRKKHPPAE EPVPIPPSAD ENSBTAP00000015459/1-314 CGPPLSDLLR WMLEYEPAKR FSIQQIRQHS WFRKKHPPAE QPVPIPPSAD ENSP00000324856/1-433 CGPPLSDLLK GMLEYEPAKR FSIRQIRQHS WFRKKHPPAE APVPIPPSPD BACU006524/1-561 CGPPLSDLLK ALGVVVPPFA ASGQPSTACS WFRKKHPPAE EPVPIPPSAD 451 500 ENSTTRP00000014159/1-340 CKDRWRGMTV VPYLEDLHGC ADAADDELFD IEDDIIYTQD FTVPGQVPEE bmy_06661T0/1-413 CKDRWRGMTV VPYLEDLHGC ADATDDELFD IEDDIIYTQD FTVPGGEEAS ENSBTAP00000015459/1-314 CKDRWRGMTV MPYLEDLHGC ADDVDDELFD IEDDVIYTQD FTVPGQVLEE ENSP00000324856/1-433 TKDRWRSMTV VPYLEDLHGA DE--DEDLFD IEDDIIYTQD FTVPGQVPEE BACU006524/1-561 CKDRWRGMTV VPYLEDLHGC ADATDDELFD IEDDIIYTQD FTVPGQVPEE 501 550 ENSTTRP00000014159/1-340 EAGRSAQSRG PPKAVCVNGT ESAQLSARSR AERRASAASN PARKACSASS bmy_06661T0/1-413 EAG--LRERG PQESQC---S DLSGEEAEAR AAEELRAEPG P--------- ENSBTAP00000015459/1-314 EAGRSAQNRV LPKAVCVNGT DTTQLNTRSR AERRASAASN PARKACSASS ENSP00000324856/1-433 EASHNGQRRG LPKAVCMNGT EAAQLSTKSR AEGR---APN PARKACSASS BACU006524/1-561 EAGRSTQSRG PHKAVCVNGT ESAQLSARSR AERRASAASN PARKACSASS 551 600 ENSTTRP00000014159/1-340 KIRRLSACKQ Q bmy_06661T0/1-413 ---------- - ENSBTAP00000015459/1-314 KIRRLSACKQ Q ENSP00000324856/1-433 KIRRLSACKQ Q BACU006524/1-561 KIRRLSACKQ Q