KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:55:57 2014 Check: 00 .. Name: ENSP00000265271/1-1060 Len: 1102 Check: 8610 Weight: 1.00 Name: ENSBTAP00000015463/1-1058 Len: 1102 Check: 2612 Weight: 1.00 Name: ENSTTRP00000015846/1-1056 Len: 1102 Check: 930 Weight: 1.00 Name: bmy_20420T0/1-1060 Len: 1102 Check: 3090 Weight: 1.00 Name: BACU015994/1-971 Len: 1102 Check: 1368 Weight: 1.00 // 1 50 ENSP00000265271/1-1060 MLIEDVDALK SWLAKLLEPI ---------- --------CD ADPSALANYV ENSBTAP00000015463/1-1058 MLIEDVDALK SWLAKLLEPI ---------- --------CD ADPSALANYV ENSTTRP00000015846/1-1056 MLIEDVDALK SWLAKLLEPI ---------- --------CD ADPSALANYV bmy_20420T0/1-1060 MLIEDVDALK SWLAKLLEPI YSVIFMEYLP YPGSELSKCD ADPSALANYV BACU015994/1-971 MLIEDVDALK SWLAKLLEPI ---------- --------CD ADPSALANYV 51 100 ENSP00000265271/1-1060 VALVKKDKPE KELKAFCADQ LDVFLQKETS GFVDKLFESL YTKNYLPLLE ENSBTAP00000015463/1-1058 VALVKKDKPE KELKAFCADQ LDVFLQKETS GFVDKLFESL YTKNYLPPLE ENSTTRP00000015846/1-1056 VALVKKDKPE KELKAFCADQ LDVFLQKETS GFVDKLFESL YTKNYLPPLE bmy_20420T0/1-1060 VALVKKDKPE KELKAFCADQ LD-------- ---------- ---NYLPPLE BACU015994/1-971 VALVKKDKPE KELKAFCADQ LDVFLQKETS GFVDKLFESL YTKNYLPPLE 101 150 ENSP00000265271/1-1060 PVKPEPKPLV QEKEEIKEEV FQEPAEEERD GRKKKYPSPQ KTRSESSERR ENSBTAP00000015463/1-1058 PVKPEPKPPV QEKEEIKEEV FQEPAEEERD GRKKKYPSPQ KTRSESSERR ENSTTRP00000015846/1-1056 PVKPEPKPPV QEKEEVKEEV FQEPAEEERD GRKKKYPSPQ KTRSESSERR bmy_20420T0/1-1060 PVKPEPKPPV QEKEEVKEEV FQEPAEEERD GRKKKYPSPQ KTRSESSERR BACU015994/1-971 PVKPEPKPPV PEKEEVKEEV FQEPAEEERD GRKKKYPSPQ KTRSESSERR 151 200 ENSP00000265271/1-1060 TREKKREDGK WRDYDRYYER NELYREKYDW RRGRSKSRSK SRGLSRSRSR ENSBTAP00000015463/1-1058 TREKKREDGK WRDYDRYYER NELYREKYDW RRGRSKSRSK SRGLSRSRSR ENSTTRP00000015846/1-1056 TREKKRDDGK WRDYDRYYER TEMYREKYDW RRGRSKSRSK SRGLSRSRSR bmy_20420T0/1-1060 TREKKRDDGK WRDYDRYYER TELYREKYDW RRGRSKSRSK SRGLSRSRSR BACU015994/1-971 TREKKRDDGK WRDYERYYER TELYREKYDW RRGRSKSRSK SRGLSRSRSR 201 250 ENSP00000265271/1-1060 SRGRSKDRDP NRNV-EHRER SKFKSERNDL ESSYVPVSAP PPNSSEQYSS ENSBTAP00000015463/1-1058 SRGRSKDRDP NRSV-EHRER SKFKSERNDL ESSYAPVSAP APNSSEQYSS ENSTTRP00000015846/1-1056 SRGRSKDRDP NRNV-EHRER SKFKSERNDL ESSYVSVSAP PPNSSEQYSS bmy_20420T0/1-1060 SRGRSKDRDP NRNVAEHRER SKFKSERNDL ESSYVSVSAP TPNSSEQYSS BACU015994/1-971 SRGRSKDRDP NRNV------ ---------- ---------- ---------- 251 300 ENSP00000265271/1-1060 GAQSIPSTVT VIAPAHHSEN TTESWSNYYN NHSSSNSFGR NLPPKRRCRD ENSBTAP00000015463/1-1058 GAQSIPSTVT VIAPAHHSEN TTESWSNYYN NHSSSNSFGR NPPPKRRCRD ENSTTRP00000015846/1-1056 GAQSIPSTVT VIAPAHHSEN TTESWSNYYN NHSSSNSFGR NPPPKRRCRD bmy_20420T0/1-1060 GAQSIPSTVT VIAPAHHSEN TTESWSNYYN NHSSSNSFGR NPPPKRRCRD BACU015994/1-971 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000265271/1-1060 YDERGFCVLG DLCQFDHGND PLVVDEVALP SMIPFPPPPP GLPPPPPPGM ENSBTAP00000015463/1-1058 YDERGFCVLG DLCQFDHGND PLVVDEVALP SMIPFPPPPP GLPPPPPPGM ENSTTRP00000015846/1-1056 YDERGFCVLG DLCQFDHGND PLVVDEVALP SMIPFPPPPP GLPPPPPPGM bmy_20420T0/1-1060 YDERGFCVLG DLCQFDHGND PLVVDEVALP SMIPFPPPPP GLPPPPPPGM BACU015994/1-971 --ERGFCVLG DLCQFDHGND PLVVDEVALP SMIPFPPPPP GLPPPPPPGM 351 400 ENSP00000265271/1-1060 LMPPMPGPGP GPGPGPGPGP GPGPGPGHSM RLPVPQGHGQ PPPSVVLPIP ENSBTAP00000015463/1-1058 LMPPMPGPGP GPGPGPG--P GPGPGPGHSM RLPVPQGHGQ PPPSVVLPIP ENSTTRP00000015846/1-1056 LMPPMPGPGP GPGPGPG--P GPGPGPGHSM RLPVPQGHGQ PPPSVVLPIP bmy_20420T0/1-1060 LMPPMPGPGP GPGPGPG--P GPGPGPGHSM RLPVPQGHGQ PPPSVVLPIP BACU015994/1-971 LMPPMPGPGP GPGPGPG--P GPGPGPGHSM RLPVPQGHGQ PPPSVVLPIP 401 450 ENSP00000265271/1-1060 RPPITQSSLI NSRDQPGTSA VPNLASVGTR LPPPLPQNLL YTVSERQPMY ENSBTAP00000015463/1-1058 RPPITQSSLI NNRDQPGTSA VPNLAPVGAR LPPPLPQNLL YTVSERQPMY ENSTTRP00000015846/1-1056 RPPITQSSLI NNRDQPGTSA VPNLAPVGAR LPPPLPQNLL YTVSERQPMY bmy_20420T0/1-1060 RPPITQSSLI NNRDQPGTSA VPNLAPVGAR LPPPLPQNLL YTVSERQPMY BACU015994/1-971 RPPITQSSLI NNRDQPGTSA VPNLAPVGAR LPPPLPQNLL YTVSERQPMY 451 500 ENSP00000265271/1-1060 SREHGAAASE RLQLGTPPPL LAARLVPPRN LMGSSIGYHT SVSSPTPLVP ENSBTAP00000015463/1-1058 SREHGAAASE RLQLGTPPPL LAARLVPPRN LMGSSIGYHT SVSSPTPLVP ENSTTRP00000015846/1-1056 SREHGAAASE RLQLGTPPPL LAARLVPPRN LMGSSIGYHT SVSSPTPLVP bmy_20420T0/1-1060 SREHGAAASE RLQLGTPPPL LAARLVPPRN LMGSSIGYHT SVSSPTPLVP BACU015994/1-971 SREHGAAASE RLQLGTPPPL LAARLVPPRN LMGSSIGYHT SVSSPTPLVP 501 550 ENSP00000265271/1-1060 DTYEPDGYNP EAPSITSSGR SQYRQFFSRT QTQRPNLIGL TSGDMDVNPR ENSBTAP00000015463/1-1058 DTYEPDGYNP EAPSITSSGR SQYRQFFSRT QTQRPNLIGL TSGDMDANPR ENSTTRP00000015846/1-1056 DTYEPDGYNP EAPSITSSGR SQYRQFFSRT QTQRPNLIGL TSGDMDANPR bmy_20420T0/1-1060 DTYEPDGYNP EAPSITSSGR SQYRQFFSRT QTQRPNLIGL TSGDMDANPR BACU015994/1-971 DTYEPDGYNP EAPSITSSGR SQYRQFFSRT QTQRPNLIGL TSGDMDANPR 551 600 ENSP00000265271/1-1060 AANIVIQTEP PVPVSINSNI TRVVLEPDSR KRAMSGLEGP LTKKPWLGKQ ENSBTAP00000015463/1-1058 AANIVIQTEP PVPVSINSNI TRVVLEPDSR KRAMSGLEGP LTKKPWLGKQ ENSTTRP00000015846/1-1056 AANIVIQTEP PVPVSINSNI TRVVLEPDSR KRAMSGLEGP LAKKPWLGKQ bmy_20420T0/1-1060 AANIVIQTEP PVPVSINSNI TRVVLEPDSR KRAMSGLEGS LAKKPWLGKQ BACU015994/1-971 AANIVIQTEP PVPVSINSNI TRVVLEPDSR KRAMSGLEGS LAKKPWLGKQ 601 650 ENSP00000265271/1-1060 GNNNQNKPGF LRKNQYTNTK LEVKKIPQEL NNITKLNEHF SKFGTIVNIQ ENSBTAP00000015463/1-1058 GNNNQSKPGF LRKNQYTNTK LEVKKIPQEL NNITKLNEHF SKFGTIVNIQ ENSTTRP00000015846/1-1056 GNNNQSKPGF LRKNQYTNTK LEVKKIPQEL NNITKLNEHF SKFGTIVNIQ bmy_20420T0/1-1060 GNNNQSKPGF LRKNQYTNTK LEVKKIPQEL NNITKLNEHF SKFGTIVNIQ BACU015994/1-971 GNNNQSKPGF LRKNQYTNTK LEVKKIPQEL NNITKLNEHF SKFGTIVNIQ 651 700 ENSP00000265271/1-1060 VAFKGDPEAA LIQYLTNEEA RKAISSTEAV LNNRFIRVLW HRENNEQPTL ENSBTAP00000015463/1-1058 VAFKGDPEAA LIQYLTNEEA RKAISSTEAV LNNRFIRVLW HRENNEQPAL ENSTTRP00000015846/1-1056 VAFKGDPEAA LIQYLTNEEA RKAISSTEAV LNNRFIRVLW HRENNEQPAL bmy_20420T0/1-1060 VAFKGDPEAA LIQYLTNEEA RKAISSTEAV LNNRFIRVLW HRENNEQPAL BACU015994/1-971 VAFKGDPEAA LIQYLTNEEA RKAISSTEAV LNNRFIRVLW HRENNEQPAL 701 750 ENSP00000265271/1-1060 QSSAQLLLQQ QQTLSHLSQQ HHHLPQHLHQ QQVLVAQSAP STVHGGIQKM ENSBTAP00000015463/1-1058 QSPTQLLLQQ QQTLSHLSQQ HHHLPQHLHQ QQVLVAQSPP SSVHGGIQKI ENSTTRP00000015846/1-1056 QSPTQLLLQQ QQTLSHLSQQ HHHLPQHLHQ QQVLVAQSPP STVHGGIQKM bmy_20420T0/1-1060 QSPTQLLLQQ QQTLSHLSQQ HHHLPQHLHQ QQVLVAQAPP STVHG----- BACU015994/1-971 QSPTQLLLQQ QQTLSHLSQQ HHHLPQHLHQ QQVLVAQAPP STVHGGIQKM 751 800 ENSP00000265271/1-1060 MSKPQTSGAY VLNKVPVKHR LGHAGGNQSD ASHLLNQSGG AGEDCQIFST ENSBTAP00000015463/1-1058 MSKPQTSGAY VLNKVPVKHR LGHASGNQSD AAHLLNQSGG AGDDCQIFPT ENSTTRP00000015846/1-1056 MNKPQTSGAY VLNKVPVKHR LGHASGNQGD AAHLLNQC-- AGDDCQIFST bmy_20420T0/1-1060 ---------- ----VPVKHR LGHASGNQGD AAHLLNQSGG AGDDCQIFST BACU015994/1-971 MSKPQTSGAY VLNKVPVKHR LGHASGNQGD AAHLLNQSGG AGDDCQIFST 801 850 ENSP00000265271/1-1060 PGHPKMIYSS SNLKTPSKLC SGSKSHDVQE VLKKKQEAMK LQQDMRKKRQ ENSBTAP00000015463/1-1058 PGHPKMIYSS TNLKTPSKLC SGSKSHDVQE VLKKKQEAMK LQQDMRKKRQ ENSTTRP00000015846/1-1056 PGHPKMIYSS SNLKTPSKLC SGSKSHDVQE VLKKKQEAMK LQQDMRKKRQ bmy_20420T0/1-1060 PGHPKMIYSS SNLKTPSKLC SGSKSHDVQE VLKKKQEAMK LQQDMRKKRQ BACU015994/1-971 PGHPKMIYSS SNLKTPSKLC SGSKSHDVQE VLKKKQEAMK LQQDMRKKRQ 851 900 ENSP00000265271/1-1060 EVLEKQIECQ KMLISKLEKN KNMKPEERAN IMKTLKELGE KISQLKDELK ENSBTAP00000015463/1-1058 EMLEKQIECQ KMLISKLEKN KNMKPEERAN IMKTLKELGE KISQLKDELK ENSTTRP00000015846/1-1056 EMLEKQIECQ KMLISKLEKN KNMKPEERAN IMKTLKELGE KISQLKDELK bmy_20420T0/1-1060 EMLEKQIECQ KMLISKLEKN KNMKPEERAN IMKTLKELGE KISQLKDELK BACU015994/1-971 EMLEKQIECQ KMLISKLEKN KNMKPEERAN IMKTLKELGE KISQLKDELK 901 950 ENSP00000265271/1-1060 TSSAVSTPSK VKTKTEAQKE LLDTELDLHK RLSSGEDTTE LRKKLSQLQV ENSBTAP00000015463/1-1058 TSSAVSTPSK VKTKTEAQKE LLDTELDLHK RLSSGEDTTE LRKKLNQLQV ENSTTRP00000015846/1-1056 TSSAVSTPSK VKXXXXAQKE LLDTELDLHK RLSSGEDTTE LRKKLSQLQV bmy_20420T0/1-1060 TSSAVSTPSK VKTKTEAQKE LLDTELDLHK RLSSGEDTTE LRKKLNQLQV BACU015994/1-971 TSSAVCTPSK VKTKTEAQKE LLDTELDLHK RLSSGEDTTE LRKKLNQLQV 951 1000 ENSP00000265271/1-1060 EAARLGILPV GRGKTMSSQG RGRGRGRGGR GRGSLNHMVV DHRPKALTVG ENSBTAP00000015463/1-1058 EAARLGILPV GRGKTMSSQG RGRGRGRGGR GRGSLNHMVV DHRPKALTVG ENSTTRP00000015846/1-1056 EAARLGILPV GRGKTMSSQG RGRGRGRGGR GRGSLNHMVV DHRPKALTVG bmy_20420T0/1-1060 EAARLGILPV GRGKTMSSQG RGRGRGRGGR GRGSLNHMVV DHRPKALTVG BACU015994/1-971 EAARLGILPV GRGKTMSSQC RGRGRGRGGR GRGSLNHMVV DHRPKALTVG 1001 1050 ENSP00000265271/1-1060 GFIEEEKEDL LQHFSTANQG PKFKDRRLQI SWHKPKVPSI STETEEEEVK ENSBTAP00000015463/1-1058 GFMEEEKDDL LQHFSPANQG SKFKDRRLQI SWHKAKVPSV STETEEEEVK ENSTTRP00000015846/1-1056 GFIEEEKDDL LQHFSPANQG SKFKDRRLQI SWHKAKVPSV STETEEEEVK bmy_20420T0/1-1060 GFIEEEKDDL LQHFSPANQG SKFKDRRLQI SWHKAKVPSV STETEEEEVK BACU015994/1-971 GFIEEEKDDL LQHFSPANQG SKFKDRRLQI SWHKAKVPSV STETEEEEVK 1051 1100 ENSP00000265271/1-1060 EE-------- ---------- -----ETETS DLFLPDDDDE DEDEYESRSW ENSBTAP00000015463/1-1058 EE-------- ---------- -----ETETS DLFLHDDDDE DEDEYESRSW ENSTTRP00000015846/1-1056 EE-------- ---------- -----ETETS DLFLHDDDDE DEDEYESRSW bmy_20420T0/1-1060 EEKEKKNLGI SGMFVDTLCK ILDFYETETS DLFLHDDDDE DEDEYESRSW BACU015994/1-971 EE-------- ---------- -----ETETS DLFLHDDDDE DEDEYESRSW 1101 1150 ENSP00000265271/1-1060 RR ENSBTAP00000015463/1-1058 RR ENSTTRP00000015846/1-1056 RR bmy_20420T0/1-1060 RR BACU015994/1-971 RR