KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:01 2014 Check: 00 .. Name: BACU012479/1-648 Len: 782 Check: 8317 Weight: 1.00 Name: ENSP00000298068/1-776 Len: 782 Check: 6095 Weight: 1.00 Name: ENSTTRP00000006812/1-729 Len: 782 Check: 1834 Weight: 1.00 Name: bmy_13202T0/1-668 Len: 782 Check: 6183 Weight: 1.00 Name: ENSBTAP00000015476/1-775 Len: 782 Check: 7531 Weight: 1.00 // 1 50 BACU012479/1-648 MLVADHMTRS ASRVGCPLK- ---------- ---------- --------DQ ENSP00000298068/1-776 MSEAVRVPSP ATPLVVAAPA PEERKGKESE REKLPPIVSA GAGATAGLDR ENSTTRP00000006812/1-729 ---------- ---------- ---------- ---------- ------GLDR bmy_13202T0/1-668 MSEVDRVPSP AAPPAVAATA PEEKKGKEPE REKLPPIVSA GAGATAGLDR ENSBTAP00000015476/1-775 MSEADRVPSP AAPPAVAASA PEEKKGKEPE REKLPPIVSA GASAPAGLDR 51 100 BACU012479/1-648 RNVGVLPTIT A--------- -AGDDTSSEK Q--------- -----LRDLP ENSP00000298068/1-776 GAKGQISTFS SFISAVSPKK EAAENRSSPA HLVFPNIKN- -----VREPP ENSTTRP00000006812/1-729 GSKGQISTSS SFVSTVNQKK EAAENRSSPT HLVFPNIKN- -----VRDLP bmy_13202T0/1-668 GSKGQISTFS SFISTVNQKK EAAENRSSPT HLVFPNIKNA FLSFTVRDLP ENSBTAP00000015476/1-775 GFKGQISTFS SVISTVNQKK EAAENRSSPT HLVFPNIKN- -----VRDLP 101 150 BACU012479/1-648 PICLDVRQKQ RISIDALSSE MKTPVLPESI LPVQPKTMKD FLEDVEKAKS ENSP00000298068/1-776 PICLDVRQKQ RTSMDASSSE MKAPVLPEPI LPIQPKTVKD FQEDVEKVKS ENSTTRP00000006812/1-729 PICLDVRQKQ RTSTDALSSE MKTPVLPEPI LPVQPKTMKD FLEDVEKAKS bmy_13202T0/1-668 PICLDVRQKQ RISIDALSSE MKTPVLPEPI LPVQPKTMKD FLEDVEKAKS ENSBTAP00000015476/1-775 PISLDVRQKQ RISTDPLSSE MKAPVLPEPI LPVQPKTMKD FLEDVEKAKS 151 200 BACU012479/1-648 SGDWKTVHDF YLTMFDSFPE LNAAFKKDAS ASFNTIEDSG INAKFVNAVY ENSP00000298068/1-776 SGDWKAVHDF YLTTFDSFPE LNAAFKKDAT ASFNTIEDSG INAKFVNAVY ENSTTRP00000006812/1-729 SGDWKTVHDF YLTMFDSFPE LNAAFKKDAS ASFNTIEDSG INAKFVNAVY bmy_13202T0/1-668 SGDWKTVHDF YLTMFDSFPE LNAAFKKDAS ASFNTIEDSG INAKFVNAVY ENSBTAP00000015476/1-775 SGDWKTVYDF YLTTFDSFPE LSAAFKKDAS AS-NTIEDSG INAKFVNAVY 201 250 BACU012479/1-648 DALLNTPQDI QKTVLKGIIN SLLREWKGPR TKDDLRAYFI LLQNPQFNNT ENSP00000298068/1-776 DTLLNTPQDV QKTVLKGIIN SLLREWKGPR TKDDLRAYFI LLQNPQFNNT ENSTTRP00000006812/1-729 DALLNTPQDI QKTVLKGIIN SLLREWKGPR TKDDLRAYFI LLQNPQFNNT bmy_13202T0/1-668 DALLNTPQDI QKTVLKGIIN SLLREWKGPR TKDDLRAYFI LLQNPQFNNT ENSBTAP00000015476/1-775 DALLNTPQDI QKTVLKGIIN SLLQEWKGPR TKDDLRAYFI LLQNPQFNNT 251 300 BACU012479/1-648 STYVIYAHLL RQIATLVEAD HHFLVHWFKK NDIR------ ---------- ENSP00000298068/1-776 STYVIYAHLL RQIATLVEAD HHFLVHWFKK LSQKRFKQLV ERLLQFISLR ENSTTRP00000006812/1-729 STYVIYAHLL RQIATLVEAD HHFLVHWFKK LSQKRFKQLV ERLLQFISLR bmy_13202T0/1-668 STYVIYAHLL RQIATLVEAD HHFLVHWFKK LSQKRFKQLV ERLLQFISLR ENSBTAP00000015476/1-775 STYVIYAHLL RQTASLVEAD HHFLAHWFKK LSQKRFKPLV ERLLQFISLR 301 350 BACU012479/1-648 ---------- ---------- ---------D TANNLVHPPL IPYTDFYNST ENSP00000298068/1-776 LFPAKPEEFP PITKCSWWIP SAAKVLALLN TANNLVHPPL IPYTDFYNST ENSTTRP00000006812/1-729 LFPAKPEEFP PISKCSWWIP SASKVLALLN TANNLVHPPL IPYTDFYNST bmy_13202T0/1-668 LFPAKPEEFP PISKCSWWIP SASKVLALLN TANNLVHPPL IPYTDFYNST ENSBTAP00000015476/1-775 LFPAKPEEFP PISKCSWWIP SASKVLALLN TANNLVHPPL IPYTDFYNST 351 400 BACU012479/1-648 LDHIDLMEEY HTWQSFGNSH RFSFCQYPFV ISIAAKKIII QRDSEQQMIS ENSP00000298068/1-776 LDHIDLMEEY HTWQNFGNSH RFSFCQYPFV ISVAAKKIII QRDSEQQMIN ENSTTRP00000006812/1-729 LDHIDLMEEY HTWQSFGNSH RFSFCQYPFV ISIAAKKIII QRDSEQQMIS bmy_13202T0/1-668 LDHIDLMEEY HTWQSFGNSH RFSFCQYPFV ISIAAKKIII QRDSEQQMIS ENSBTAP00000015476/1-775 LDHIDLMEEY HTWQSFGNSH RFSFCQYPFV ISIAAKKIII QRDSEQQMIS 401 450 BACU012479/1-648 IAR------- ---------- ---------- ---------L TRKRADLKKK ENSP00000298068/1-776 IARQSLVDKV SRRQRPDMNI LFLNMKVRRT HLVSDSLDEL TRKRADLKKK ENSTTRP00000006812/1-729 IARQSLVDKV SRRQRPDMNM LFLNMKVRRT HLVSDSLDEL TRKRADLKKK bmy_13202T0/1-668 IARQSLVDKV SRRQRPDMNM LFLNMKVRRT HLVSDSLDEL TRKRADLKKK ENSBTAP00000015476/1-775 IARQSLVDKV SRRQRPDMNM LFLNMKVRRT HLVSDSLDEL TRKRADLKKK 451 500 BACU012479/1-648 LKVTFVGEAG LDMGGLTKEW FLLLIRQIFH PDYGMFMYHK DSYCHWFSSF ENSP00000298068/1-776 LKVTFVGEAG LDMGGLTKEW FLLLIRQIFH PDYGMFTYHK DSHCHWFSSF ENSTTRP00000006812/1-729 LKVTFVGEAG LDMGGLTKEW FLLLIRQIFH PDYSMFTYHK DSYCHWFSSF bmy_13202T0/1-668 LKVTFVGEAG LDMGGLTKEW FLLLIRQIFH PDYGMFMYHK DSYCHWFSSF ENSBTAP00000015476/1-775 LKVTFVGEAG LDMGGLTKEW FLLLIRQIFH PDYGMFTYHK DSYCHWFSSF 501 550 BACU012479/1-648 KCDNYSEFRL VGILMGLAVY NSITLDIRFP PCCYKKLLSP PIVPNDQSMP ENSP00000298068/1-776 KCDNYSEFRL VGILMGLAVY NSITLDIRFP PCCYKKLLSP PIIPSDQNIP ENSTTRP00000006812/1-729 KCDNYSEFRL VGILMGLAVY NSITLDI-FP PCCYKXXXXX XXXXXXXXXX bmy_13202T0/1-668 KCDNYSEFRL VGILMGLAVY NSITLDIRFP PCCYKKLLSP PIVPNDQSMP ENSBTAP00000015476/1-775 KCDNYSEFRL VGILMGLAVY NSITLDIRFP PCCYKKLLSP PIVPSDQNTP 551 600 BACU012479/1-648 VGICSVTTDD LCQIMPELAH GLSELLSYEG NVEEDFYSTF QVFQEEFGII ENSP00000298068/1-776 VGICNVTVDD LCQIMPELAH GLSELLSHEG NVEEDFYSTF QVFQEEFGII ENSTTRP00000006812/1-729 XXXXXXXXXX XXXXXXELAH GLSELLSYEG NVEEDFYSTF QVFQEEFGII bmy_13202T0/1-668 VGICSVTTDD LCQIMPELAH GLSELLSYEG NVEEDFYSTF QVFQEEFGII ENSBTAP00000015476/1-775 VGICSVTTDD LCQIMPELAH GLSELLSYEG NVEEDFYSTF QVFQEEFGII 601 650 BACU012479/1-648 KSYNLKPGGD KIPVTNQNRK EYVQLYIDFL LNKSIYKQFA AFYYGFHSVC ENSP00000298068/1-776 KSYNLKPGGD KISVTNQNRK EYVQLYTDFL LNKSIYKQFA AFYYGFHSVC ENSTTRP00000006812/1-729 KSYNLKPGGD KIAVTNQNRK EYVQLYIDFL LNKSIYKQFA AFYYGFHSVC bmy_13202T0/1-668 KSYNLKPGGD KIPVTNQNRK EYVQLYIDFL LNKSIYKQFA AFYYGFHSVC ENSBTAP00000015476/1-775 KSYNLKPGGD KIPVTNQNRK EYVQLYIDFL LNKSIYKQFA AFYYGFHSVC 651 700 BACU012479/1-648 ASNALMLLRP EEVEILVCGS PELDMHALQR STQYEGYAKT DLTIRYFWDV ENSP00000298068/1-776 ASNALMLLRP EEVEILVCGS PDLDMHALQR STQYDGYAKT DLTIKYFWDV ENSTTRP00000006812/1-729 ASNALMLLRP EEVEILVCGS PELDMHALQR STQYDGYAKT DLTIRYFWDV bmy_13202T0/1-668 ASNALMV--- ---------- -SLKLHAFSK VL-------- ---------- ENSBTAP00000015476/1-775 ASNALMLLRP EEVEILVCGS PELDMHALQR STQYDGYAKT DLTIRYFWDV 701 750 BACU012479/1-648 VLGFPLDLQK KLLHFTTGSD RVPVGGMADL NFKISKNETS TNWLPVAHTC ENSP00000298068/1-776 VLGFPLDLQK KLLHFTTGSD RVPVGGMADL NFKISKNETS TNCLPVAHTC ENSTTRP00000006812/1-729 VLGFPLDLQK KLLHFTTGSD RVPVGGMADL NFKISKNETS TNWLPVAHTC bmy_13202T0/1-668 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015476/1-775 VLGFPLDLQK KLLHFTTGSD RVPVGGMADL NFKISKNETS TNWLPVAHTC 751 800 BACU012479/1-648 FNQLCLPPYK SKKDLKQKLI IGISNSEGFG LE ENSP00000298068/1-776 FNQLCLPPYK SKKDLKQKLI IGISNSEGFG LE ENSTTRP00000006812/1-729 FNQLCLPPYK SKKDLKQKLI IGISNSEGFG LE bmy_13202T0/1-668 ---------- ---------- ---------- -- ENSBTAP00000015476/1-775 FNQLCLPPYK SKKDLKQKLI IGISNSEGFG LE