KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:03 2014 Check: 00 .. Name: ENSTTRP00000013189/1-576 Len: 592 Check: 5954 Weight: 1.00 Name: ENSP00000413405/1-579 Len: 592 Check: 2855 Weight: 1.00 Name: ENSBTAP00000015483/1-574 Len: 592 Check: 6861 Weight: 1.00 Name: bmy_02300T0/1-541 Len: 592 Check: 9434 Weight: 1.00 Name: BACU020146/1-575 Len: 592 Check: 2214 Weight: 1.00 // 1 50 ENSTTRP00000013189/1-576 MQVCGTRIAS VAAKSSA--L GPVSWQQFDM KMAARVLWGS LSLLRLVWCL ENSP00000413405/1-579 MQICGSSVAS VAAGTSFQVL GPVCWQQLDL KMAVRVLWGG LSLLRVLWCL ENSBTAP00000015483/1-574 ---CGTRIAS AAAEVILD-S GPVSLQQFDM EMEARVLWGS LGLLRLVWCL bmy_02300T0/1-541 ---------- ---------- ---------M KMAARVLWGS LSLLRLVWCL BACU020146/1-575 MQVCGTRIAS VAAEVIA--L GPVSWQQFDM KMAARVLWGS LGLLRLVWCL 51 100 ENSTTRP00000013189/1-576 LPQTGYVHPD EFFQSPEVMA EDVLGIKAAR PWEFHPSSPC RTVVFPLLTS ENSP00000413405/1-579 LPQTGYVHPD EFFQSPEVMA EDILGVQAAR PWEFYPSSSC RSVLFPLLIS ENSBTAP00000015483/1-574 LPQTGYVHPD EFFQSPEVMA GDILGIEAAR PWEFHPSSPC RTAVFPLLTS bmy_02300T0/1-541 LPQTGYVHPD EFFQSPEVMA ---------- ---------- --VVFPLLTS BACU020146/1-575 LPQTGYVHPD EFFQSPEVMA EDVLGIKAAR PWEFHPSSPC RTVVFPLLTS 101 150 ENSTTRP00000013189/1-576 GSAFWLLRLW EEWGPWPGPV SGYALLVGPR LLLASLSFAL DLAVYHLAPR ENSP00000413405/1-579 GSTFWLLRLW EELGPWPGLV SGYALLVGPR LLLTALSFAL DGAVYHLAPP ENSBTAP00000015483/1-574 GSAFWLLRLW EEWGPWPGVV SGYLLLVGPR LLLTALSFAL DLAVYHLAPG bmy_02300T0/1-541 GSAFWLLRLW EEWGPWPGLV SGYVLLVGPR LLLASLSFAL DLAVYHLAPR BACU020146/1-575 GSAFWLLRLW EEWGPWPGPV SGYALLVGPR LLLTSLSFAL DLAVYHVAPR 151 200 ENSTTRP00000013189/1-576 WGAERWNALV LLSGSYVTLV FYTRTFSNAI EGLLFAWLLV LVSPRVAGSC ENSP00000413405/1-579 MGADRWNALA LLSGSYVTLV FYTRTFSNTI EGLLFTWLLV LVSSHVTWGP ENSBTAP00000015483/1-574 WGAERWNALL LLSGSYVTLV FYTRTFSNAI EGLLFAWLLV LVSPRAARSR bmy_02300T0/1-541 WGAERWNALV LLSVSYVTLV FYTRTFSNAI EGLLFAWLLV LVSPRVAGSC BACU020146/1-575 WGAERWNALV LLSGSYVTLV FYTRTFSNAI EGLLFVWLLV LVSPRVTGSC 201 250 ENSTTRP00000013189/1-576 TPKKPAPGPP XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000413405/1-579 TRKEPAPGPR WRSWLLGGIV AAGFFNRPTF LAFAVVPLYL WGTRGATNPG ENSBTAP00000015483/1-574 TPRKPAPGPR WHGWLLGGLV VAGFFNRPTF LAFALVPLFL WGTCGATDPS bmy_02300T0/1-541 TPKKPAPGPL WHSWLLGGVM AAGFFNRPTF LAFALVPLFL WGTYGATNPS BACU020146/1-575 TPKKPAPGPL WHGWLLGGVM AAGFFNRPTF LAFALVPLFL WGTYGATNPS 251 300 ENSTTRP00000013189/1-576 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000413405/1-579 LKSLTREALV LLPGAALTAA VFVATDSWYF SSPATSRNLV LTPVNFLHYN ENSBTAP00000015483/1-574 FKSLTQQALT LLPGASLTAV AFVAVDSWYF SGPSRPSTLV LTPANFLRYN bmy_02300T0/1-541 LKSLTKEALV LLPGATLTAV GFVAVDSCYF SSPSRPRTLV LTPANFLYYN BACU020146/1-575 LKSLTKEALV LLPGATLTAV GFVAVDSCYF SSPSRPSTLV LTPANFLYYN 301 350 ENSTTRP00000013189/1-576 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000413405/1-579 LNPQNLARHG THARLTHLAV NGFLLFGVLH AQALQAAWQR LQVGLQASAQ ENSBTAP00000015483/1-574 LDPVNLARHG THARLTHLAV NGFCSLGC-C TPILQAAWQQ LRAGLQAFAQ bmy_02300T0/1-541 LDPVNLARHG THMRLTHLAV NGFLLFGVLH AHALQAAWQQ LRACLQAFTQ BACU020146/1-575 LDPVNLARHG THMRLTHLAV NGFLLFGVLH AHALQAAWQQ LRACLQAFIQ 351 400 ENSTTRP00000013189/1-576 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXQ FLIPLLVPLV ENSP00000413405/1-579 MGLLRALGAR SLLSSPRSYL LLLYFMPLAL LSAFSHQEAR FLIPLLVPLV ENSBTAP00000015483/1-574 MGFPRTLEAW SPRPSPRSLL LLFYFVPLAL LSAFSHQEAR FLIPLLVPLV bmy_02300T0/1-541 MGFPRALAAR SLQSSPRSHL LLLYFMPLAL LSAFSHQEAR FLIPLLVPLV BACU020146/1-575 MGFPRALAAR SLQSSPRSHL LLLYFMPLAL LSVFSHQEAR FLIPLLVPLV 401 450 ENSTTRP00000013189/1-576 LLCSLPIQLA PCKGTLVLFN ALGALFFGCL HQGGLVPGLG HLEQVVRAPV ENSP00000413405/1-579 LLCSPQTQPV PWKGTVVLFN ALGALLFGCL HQGGLVPGLE YLEQVVHAPV ENSBTAP00000015483/1-574 LLCSLQTQPA PCRGTLALFN VLGALFFGCL HQGGLVPGLG HLERVVHAPE bmy_02300T0/1-541 LLCSLQTQLA PRKGTLVLCN ALGALFFGCL HQGGLVPGLG HLEQVVRAPA BACU020146/1-575 LLCSLQTQLA PRKGTLVLCN ALGALFFGCL HQGGLVPGLG HLERVVRAPA 451 500 ENSTTRP00000013189/1-576 LPQVPTHYTL LFTHTYMPPR HLLHLPGLGS PVEVVDMGGA EDQLLCQALS ENSP00000413405/1-579 LPSTPTHYTL LFTHTYMPPR HLLHLPGLGA PVEVVDMGGT EDWALCQTLK ENSBTAP00000015483/1-574 PLRVPTHFTL VFTHTYMPPR HLLHLPGLGL PVDVVDMGGA EDWVLCQALN bmy_02300T0/1-541 LPHVPTHYTL LFTHTYMPPR HLLHLPGLGS PVEVVDMGGA EDQLLCQALS BACU020146/1-575 LPRVPTHYTL LFTHTYMPPR HLLHLPGLGS PVEVVDMGGA EDQLLCQALS 501 550 ENSTTRP00000013189/1-576 NLTRRPACHV AGGPWLCRLF VVTPGTTRSA MKKCSFPLKS ETLIFPHVTL ENSP00000413405/1-579 SFTRQPACQV AGGPWLCRLF VVTPGTTRRA VEKCSFPFKN ETLLFPHLTL ENSBTAP00000015483/1-574 NFTRHAACQA AGGPWLCRLF VVTPGTTRPA VRKCRFPLKS ETLIFPHLTL bmy_02300T0/1-541 NLTRQPACHV AGGPWLCRLF VVTPGTTRSA MKKCSFPLKS ETLIFPHLTL BACU020146/1-575 NLTRQPACHV AGGPWLCRLF VVTPGTTRSA MKKCSFPLKN ETLIFPHLTL 551 600 ENSTTRP00000013189/1-576 EDPPALSSLL SGAWRYHLSL HILELGEA-- ---------- -- ENSP00000413405/1-579 EDPPALSSLL SGAWRDHLSL HIVELGEET- ---------- -- ENSBTAP00000015483/1-574 EDPPALSSLL SSAWRDHLSL HILELGEKP- ---------- -- bmy_02300T0/1-541 EDPPALSSLL SGAWRYHLSL HILELGEKPD NMTEKPLPKT QP BACU020146/1-575 EDPPALSSLL SGAWRYHLSL HILELGE--- ---------- --