KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:03 2014 Check: 00 .. Name: ENSP00000175756/1-460 Len: 673 Check: 9062 Weight: 1.00 Name: ENSBTAP00000015484/1-454 Len: 673 Check: 6118 Weight: 1.00 Name: bmy_14948T0/1-562 Len: 673 Check: 3898 Weight: 1.00 Name: BACU009938/1-438 Len: 673 Check: 7544 Weight: 1.00 Name: ENSTTRP00000011940/1-453 Len: 673 Check: 9920 Weight: 1.00 // 1 50 ENSP00000175756/1-460 MSRSLDSARS FLERLEARGG REGAVLAGEF S--------- ---------- ENSBTAP00000015484/1-454 MSRSLDAARS FLEQLEALGG RHGVVFAGEF S--------- ---------- bmy_14948T0/1-562 MSRSLDAARS FLEQLEARGG REGAVLAGEF SVSGRVGRQR AALRLLALDA BACU009938/1-438 MSRSLDAARS FLEQLEARGG REGAVLAGEF S--------- ---------- ENSTTRP00000011940/1-453 MSCSLDAARS FLEQLEARGV REGPVLAYEF S--------- ---------- 51 100 ENSP00000175756/1-460 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015484/1-454 ---------- ---------- ---------- ---------- ---------- bmy_14948T0/1-562 PLSVALSPCL SSPSASRVPE GDVHGRVGRD RASPRVPAPS PRSRNRPVAE BACU009938/1-438 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011940/1-453 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000175756/1-460 ---------- ---------- ---------- ---------- DIQACSAAWK ENSBTAP00000015484/1-454 ---------- ---------- ---------- ---------- DIRARSAAWK bmy_14948T0/1-562 QGGRSPALDT RRPAAPGDQA ATPVVVHDIM SIRVWVQSGT DIRARSASWK BACU009938/1-438 ---------- ---------- ---------- ---------- DIRARSASWK ENSTTRP00000011940/1-453 ---------- ---------- ---------- ---------- DIRARSASWK 151 200 ENSP00000175756/1-460 ADGVCSTVAG SRPENVRKNR YKDVLPYDQT RVILSLLQEE GHSDYINGNF ENSBTAP00000015484/1-454 TESVRSTEAG SRPENVRKNR YKDVLPYDQT RVILSLLQEE GHGDYINGNF bmy_14948T0/1-562 TDSVCSTEAG SRPENVRKNR YKDVLPYDQT RVILSLLQEE GHGDYINGNF BACU009938/1-438 TDSVCSTEAG SRPENVRKNR YKDVLPYDQT RVILSLLQEE GHGDYINGNF ENSTTRP00000011940/1-453 TDSVCSTEAG SRPENVRKNR YKDVLPYDKT RVILSLLQEE GHGDYINGNF 201 250 ENSP00000175756/1-460 IRGVDGSLAY IATQGPLPHT LLDFWRLVWE FGVKVILMAC REIENGRKRC ENSBTAP00000015484/1-454 IRGTDGSQAY IATQGPLPHT LLDFWRLIWE FGVKVILMAC QEMENGRKKC bmy_14948T0/1-562 IR-------- ---------- ---------- ---------- -------KKC BACU009938/1-438 IRGTDGSQAY IATQGPLPHT LLDFWRLIWE FGVKVILMAC QEMENGRKKC ENSTTRP00000011940/1-453 IRGTDGSQAY IATQGPLPHT LLDFWRLIWE FGVKVILMAC -EIENGQKKC 251 300 ENSP00000175756/1-460 ERYWAQEQEP LQTGLFCITL IKEKWLNEDI MLRTLKVTFQ KESRSVYQLQ ENSBTAP00000015484/1-454 ERYWALQQEP LQIGPFCITL TRDMWLNPDI KLRILQVTFQ KESRSVFQLQ bmy_14948T0/1-562 ERYWAQEQEP LQIGLFCITL -RGLWAN--- ---------- ---------- BACU009938/1-438 ERYWAQEQEP LQIGLFCITL TRETWLNADI TLRTLQVSFQ KESRSVYQLQ ENSTTRP00000011940/1-453 ERYWAQEQEP LQIGLFCITL TRETWLNADI TLRTLQVTFQ KESRSVYQLQ 301 350 ENSP00000175756/1-460 YMSWPDRGVP SSPDHMLAMV EEARRLQGSG PEPLCVHCSA GCGRTGVLCT ENSBTAP00000015484/1-454 YMSWPDRGVP SNPDNVLAMV EKARHLQGSG PNPLCVHCSA GCGRTGVLCT bmy_14948T0/1-562 ---------- ---------- ---------- ------RCPV HRGLCETVAP BACU009938/1-438 YMSWPDRGVP SNPDHMLAMV EEARRLQGSG PSPLCVHCSA GCGRTGVLCT ENSTTRP00000011940/1-453 YMSWPDRGVP SNPDHVLAMV EEARRLQGSG PSPLCVHCSA GCGRTGVLCT 351 400 ENSP00000175756/1-460 VDYVRQLLLT QMIPPDFSLF DVVLKMRKQR PAAVQTEEQY RFLYHTVAQM ENSBTAP00000015484/1-454 VDYVRQLLLT QMIPPNFSLF SVVLEIRKQR PLAIQTEEQY RFLYHTVSQM bmy_14948T0/1-562 DPGMKRAYKR SMIPPNFSLF NVVLEIRRQR PAAIQTEEQY RFLYHTVAQM BACU009938/1-438 VDYVRQLLLT QMIPPNFSLF NVVLEIRRQR PAAIQTEEQY RFLYHTVAQM ENSTTRP00000011940/1-453 LDYVRQLLLT QMIPSNFSLF SVVLEIRRQR PAAIQTEEQY RFLYHTVAQM 401 450 ENSP00000175756/1-460 FCSTLQNASP HYQNIKENCA PLYDDALFLR TPQALLAIPR PPGGVLRSIS ENSBTAP00000015484/1-454 FLSAIQNASP HYQNLKENCV PLYDDALSLW TSQNLNAIAR PSSGVLRSIS bmy_14948T0/1-562 FLSVLQNASP RYQNLKENCA PLYDDAFSLR TSHTLPAIAR PSGGVLRSIS BACU009938/1-438 FLSALQSASP RYQNLKENCA PLYDDAFSLW TSHTLPAIAR PSGGVLRSIS ENSTTRP00000011940/1-453 FLSALQNASP HYQNLKENCA PLYDDAFSLR TSHTLPATAR PSGGVLRSIS 451 500 ENSP00000175756/1-460 VPGSPGHAMA DTYAVVQKRG APAGAGSGTQ TGTGTGTGAR SAEEAPLYSK ENSBTAP00000015484/1-454 VLGPPALSMA DTYAVVQKRA APAGTGA--- ---GAGARAR GTEDTPLYSQ bmy_14948T0/1-562 VPGPPGLAMA DTYAVVQKRA APAGTGA--- ---GAGARAR GAEETPLYSQ BACU009938/1-438 VPGPPGLAMA DTYAV----- -PAFSGL--- ---GGCALAS --------QR ENSTTRP00000011940/1-453 VPGPPGLAMA DTYAVVQKRA APAGTGT--- ---GAGARAR GAEETPLYSQ 501 550 ENSP00000175756/1-460 VTPRAQRPGA HAEDARGTLP GR-------- ---------- ---------- ENSBTAP00000015484/1-454 VKPRAWRHQA LSEDARGAQQ GR-------- ---------- ---------- bmy_14948T0/1-562 VTPRARRPQA HAEDGREPLP GRVLPGHAPE ADVLASPATP LGQPPVLWSR BACU009938/1-438 LSGTSRGGLS RSVRG-GFLP A--------- ---------- ---------- ENSTTRP00000011940/1-453 VTPRARRPQA HAEDGRGPLP GR-------- ---------- ---------- 551 600 ENSP00000175756/1-460 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015484/1-454 ---------- ---------- ---------- ---------- ---------- bmy_14948T0/1-562 PEASRAKPRS LARPPSLGGG LRFGHAPGHA PSRWAPALGP QPAFSGLGGC BACU009938/1-438 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011940/1-453 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000175756/1-460 ---------- ---------- ------VPAD QSPAGSGAYE DVAGGAQTGG ENSBTAP00000015484/1-454 ---------- ---------- ------VPVD ESLAGPGAYE DVADRAQTGG bmy_14948T0/1-562 AFASQRLSGT SRGGLSRPVR GGFLPAVPVD QSPAGPGAYE DVVDGAQTGG BACU009938/1-438 ---------- ---------- ------VPVD QSPAGPGAYE DVVDGAQTGG ENSTTRP00000011940/1-453 ---------- ---------- ------VPVD QSPAGPGAYE DVVDGAQTGG 651 700 ENSP00000175756/1-460 LGFNLRIGRP KGPRDPPAEW TRV ENSBTAP00000015484/1-454 LGFNLRIGRP KGPRDPPAEW TRV bmy_14948T0/1-562 LGFNLRIGRP KGPRDPPAEW TRV BACU009938/1-438 LGFNLRIGRP KGPRDPPAEW TRV ENSTTRP00000011940/1-453 LGFNLRIGRP KGPRDPPAEW TRV