KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:07 2014 Check: 00 .. Name: ENSP00000275072/1-436 Len: 436 Check: 9026 Weight: 1.00 Name: ENSBTAP00000015493/1-428 Len: 436 Check: 415 Weight: 1.00 Name: ENSTTRP00000003456/1-428 Len: 436 Check: 530 Weight: 1.00 Name: bmy_17634T0/1-397 Len: 436 Check: 9059 Weight: 1.00 Name: BACU016931/1-433 Len: 436 Check: 3789 Weight: 1.00 // 1 50 ENSP00000275072/1-436 MRPGGERPVE GGACNGRSEL ELLKLRSAEC IDEAAERLGA LSRAIWSQPE ENSBTAP00000015493/1-428 MRPGEERPVE GGACASVSDL ELLKLRAAEC VDAAAERLGA LSRAIWSEPE ENSTTRP00000003456/1-428 MRPGEERPVE GGACR-VFEV ELLKLRAAEC IDEAAERLGA -SRAIWSEPE bmy_17634T0/1-397 MKPGEERPVE GGACAAVFEV ELLKLRAAEC IDEAAERLGA LSREIWSEPE BACU016931/1-433 MRPGEERPVE GGACAAVFEV ELLKLRAAEC IDEAAERLGA LSREIWSEPE 51 100 ENSP00000275072/1-436 LAYEEHHAHR VLTHFFEREP PAASWAVQPH YQLPTAFRAE WEPPEARAPS ENSBTAP00000015493/1-428 LAYEEHHAHG VLTRFFQSET PAGSWAVQPH YQLATAFRAE WGSPGGW--- ENSTTRP00000003456/1-428 LAYEEHHAHD VLTRFFQSER PAASWVVQPH YQLVTAFRAE WGPTRGW--- bmy_17634T0/1-397 LAYEEHHAHG VLTRFFESER PAASWAVQPH YQLVTAFRAE WGPPGGW--- BACU016931/1-433 LAYEEHHAHG VLTRFFESER PAASWVVQPH YQLVTAFRAE WGPPGGW--- 101 150 ENSP00000275072/1-436 ATPRPLHLGF LCEYDALPGI GHACGHNLIA EVGAAAALGV RGALEGLPRP ENSBTAP00000015493/1-428 AAPRPLHLGF LCEYDALPGI GHACGHNLIA EVGAAAALGV KGALESLAGL ENSTTRP00000003456/1-428 AAPSPLHLGF LCEYDALPGI GHACGHNLIA EVGAAAALGV KGALESLPGP bmy_17634T0/1-397 AAPRPLHLGF LCEYDALPGI GHACGHNLIA EVGAAAALGV KGALESLPRP BACU016931/1-433 AAPRPLHLGF LCEYDALPGI GHACGHNLIA EVGAAAALGV KGALESLPRL 151 200 ENSP00000275072/1-436 PPPVKVVVLG TPAEEDGGGK IDLIEAGAFT NLDVVFMAHP SQENAAYLPD ENSBTAP00000015493/1-428 PLPVKVIVLG TPAEEDGGGK IDLIEAGAFK NLDVVFMAHP SQENAAYLPD ENSTTRP00000003456/1-428 PLPVKVIVLG TPAEEDGGGK IDLIEAGAFK NLDVVFMAHP SQENAAYLPD bmy_17634T0/1-397 PLPVKVIVLG TPAEEDGGGK IDLIEAGAFK NLDVVFMAHP SQENAAYLPD BACU016931/1-433 PLPVKVVVLG TPAEEDGGGK IDLIEAGAFK SLDVVFMAHP SQENAAYLPD 201 250 ENSP00000275072/1-436 MAEHDVTVKY YGKASHSASY PWEGLNALDA AVLAYNNLSV FRQQMKPTWR ENSBTAP00000015493/1-428 VAEHDVTVKY YGKASHAAAY PWEGLNALDA AVLAYNNLSV LRQQLKPTWR ENSTTRP00000003456/1-428 VAEHDVTVKY YGKASHAAAY PWEGLNALDA AVLAYSNLSV LRQQMKPTWR bmy_17634T0/1-397 VAEHDMTVTY YGKASHAAAY PWEGLNALDA AVLAYNNLSV LRQQMKPTWR BACU016931/1-433 VAEHDMIVKY YGKASHAAAY PWEGLNALDA AVLAYNNLSA LRQQMKPTWR 251 300 ENSP00000275072/1-436 VHGIIKNGGV KPNIIPSYSE LIYYFRAPSM KELQVLTKKA EDCFRAAALA ENSBTAP00000015493/1-428 VHGIIKNGGV KPNIIPSYSE LIYYFRAPSM KELPVLTKKA EDCFRAAALA ENSTTRP00000003456/1-428 VHGIIKNGGV KPNIIPSYSE LIYYFRAPSM KELPVLTKKA EDCFRAAALA bmy_17634T0/1-397 VHGIIKNGGV KPNIIPSYSE LIYYFRAPSM KELPVLTKKA EDCFRAAALA BACU016931/1-433 VHGIIKNGGV IPNIIPSYSE LIYYFRAPSM KELPVLTKKA EDCFRAAALA 301 350 ENSP00000275072/1-436 SGCTVEIKGG AHDYYNVLPN KSLWKAYMEN GRKLGIEFIS EDTMLNGPSG ENSBTAP00000015493/1-428 TGCTVEINGG AHDYYNVLPN KSLWKAYVEN GKKLGIDFIS EDAMFSGPSG ENSTTRP00000003456/1-428 TGCTVEIEGG AHDYYNVLPN KSLWKAYIEN GKKLGIDFIS EDAMLNGPSG bmy_17634T0/1-397 TGCTVEIKGG AHDYYNVLPN KSLWKAYIEN GKKLGIDFIS EDAMLNVPS- BACU016931/1-433 TGCTVEIKGG AHDYYNVLPN KSLWRAYIEN GKKLGIDFIS EDAMLNVPSG 351 400 ENSP00000275072/1-436 STDFGNVSFV VPGIHPYFHI GSNALNHTEQ YTEAAGSQEA QFYTLRTAKA ENSBTAP00000015493/1-428 STDFGNVSFV VPGIHPYFYI GSNALNHTEQ YTEAAGSQEA QFYTLRTAKA ENSTTRP00000003456/1-428 STDFGNVTFV VPGIHPYFYI -SNALNHTEQ YTEAAGSQEA QFYTL-TAKA bmy_17634T0/1-397 ---------- ---------- ---------- -----GSQEA QFYTLRTAKA BACU016931/1-433 STDFGNVTFV VPGIHPYFYI GSNALNHTEQ YTEAAGSQEA QFYTLRTAKA 401 450 ENSP00000275072/1-436 LAMTALDVIF KPELLEGIRE DFKLKLQEEQ FVNAVE ENSBTAP00000015493/1-428 LAMTALDVIF KPELLARIRE DFRLKLEEEK F----- ENSTTRP00000003456/1-428 LAMTALDVI- KPELLERIRE DFKLKLQEEE FLNTVE bmy_17634T0/1-397 LAMTALDVIF KPELLERIRE DFKLKLQEEE FLNTVE BACU016931/1-433 LAMTALDVIF KPELLERIRE DFKLKLQEEE FLNTVE