KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:14 2014 Check: 00 .. Name: ENSP00000331647/1-501 Len: 596 Check: 5198 Weight: 1.00 Name: ENSBTAP00000015528/1-498 Len: 596 Check: 1920 Weight: 1.00 Name: ENSTTRP00000006238/1-487 Len: 596 Check: 9309 Weight: 1.00 Name: bmy_22194T0/1-564 Len: 596 Check: 1034 Weight: 1.00 Name: BACU009063/1-543 Len: 596 Check: 7535 Weight: 1.00 // 1 50 ENSP00000331647/1-501 MGSRPPCGAT SSARRACQFP APMAAAREPE LPQEAPATEP APPPACRFFL ENSBTAP00000015528/1-498 ---------- ---------- ---------- -----SVAEP GPSPACRFFL ENSTTRP00000006238/1-487 ---------- ---------- --MAAAEGPE PPVGAPSAEP APPPACRFFL bmy_22194T0/1-564 ---------- ---------- --MAAAGGPE SPVGAPVAEP APPPACRFFL BACU009063/1-543 ---------- ---------- ---------- ---------- ---------M 51 100 ENSP00000331647/1-501 EGRCRFGARC RQPHPGAPAP PGREAQP--E AGAKKPPLRT AADVIQRIRW ENSBTAP00000015528/1-498 EGRCRFGARC RQPHPGAPAL PQPRGEAEDQ AKAKKPPLRT AEAVIQRIRW ENSTTRP00000006238/1-487 EGRCRFGARC RQPHPGAPAP PSLEASP--E AKAKKTPLRT AAAVIQRIRW bmy_22194T0/1-564 EGRCRFGARC RQPHPGAPAP PQPRGEPEAE AKTKKPPLRT AAAVIQRIRW BACU009063/1-543 EGRCRFGARC RQPHPGAPAP PQPRGEPEAE AKTKKPPLRT AAAVIQRIRW 101 150 ENSP00000331647/1-501 DPRLDPADFS VGYVDRFLGV REEPFSAFCW DQPLAALGPG VLAVPQHRVR ENSBTAP00000015528/1-498 DPHLNPADFS VGYVDRFLGV REEPFLSFCW DEPLAALAPG VLAVPQHRVR ENSTTRP00000006238/1-487 DPRLDPADFS VGYVDRFLGV REKPFLSFCW DEPLAALGPG VLAVPQHRVR bmy_22194T0/1-564 DPRLDPADFS VGYVDRFLGS REEPFLSFCW DEPLAALGPG VLAVPQHRIR BACU009063/1-543 DPRLDPADFS VGYVDRFLGL REEPFLSFCW DEPLAALGPG VLAVPQHRVR 151 200 ENSP00000331647/1-501 FFRFHGRLVW DRASRTDLVF GSGSAAGRGP TILDAPNTEG AHGA------ ENSBTAP00000015528/1-498 YFRFRGRLVW DRASRTDLVF GSGLAAGRGP TILDALHGED AHGP------ ENSTTRP00000006238/1-487 YFRFRGRLGW DRASRTDLVF GSGLAAGRGS TILYALDCGD AHGV------ bmy_22194T0/1-564 YFRFRGRLVW DRASRTDLVF GSGLAAGRGS TILDALDGGD AHGVGEAGDG BACU009063/1-543 YFRFRGRLVW DRASRTDLVF GSGLAAGRGS TILDALDGGD AHGVGEAGDG 201 250 ENSP00000331647/1-501 ---------E GAEWT----- ---------- ---------- --LAGTGQ-- ENSBTAP00000015528/1-498 ---------- ---------- ---------- -----GG--S GDAHGNGE-- ENSTTRP00000006238/1-487 --------LK DGEWT----- ---------- ---------- --PAETGR-- bmy_22194T0/1-564 EDAPQTGHAS DGEHVHGAGG ESDGV----- -GAHDGGDRG GDVHGTGTGD BACU009063/1-543 EDAHQTGHAS DGEHVHGAGG ESDGVDARGT GGAHDGGDRG GDVHGTGTGD 251 300 ENSP00000331647/1-501 ---------- ---------- ---------- -EAQAAPKRG STRPLCTGHQ ENSBTAP00000015528/1-498 ASDGEDANSV GDALGGEDTD GTGGALDSVA ATRLGTDAGG PVQPAQTRLR ENSTTRP00000006238/1-487 ---------- ---------- EAGGALRWT- -RPLGTSAGG RVQPAWTGLR bmy_22194T0/1-564 ESDGEDAYGA VGALSGGDTA GAGGALDGVA ATCLGTGAGG RVQPAWTGLR BACU009063/1-543 ESDGEDAYGA GGALSGGDTA GAGGALDGVA ATCLGTGAGG RVQPTWTELR 301 350 ENSP00000331647/1-501 EPGVEEPGEL EAAQERALGT AA-----DLG TLAPRGRLAG VTEEALKP-- ENSBTAP00000015528/1-498 AALASDGGSP EAGRLTLAGV LARTQEWESA DSGGQACPWM APGGALKPAA ENSTTRP00000006238/1-487 GMAEAPKRAP GVGRDVIE-- -------DPG AVALEGFPVD AAKKALKP-- bmy_22194T0/1-564 AALAPDGGGT EAGRLALAGT LSRIQELELG GPGGQGSPWM QPRRALKP-- BACU009063/1-543 AALAPDGGGP EAGRLGLAGT LSRIQERGLG GPGGQGSPWM QPRRALKP-- 351 400 ENSP00000331647/1-501 --TAATRTTL LGGKEAQAL- --GVPGGSAE TTEAEWGPAA WPEDKRARLS ENSBTAP00000015528/1-498 AAAAAARAMQ TRG------- --GKPPESFS EMGTEWGPGI WPVDRGATAA ENSTTRP00000006238/1-487 -AAAAARDLE PPGGKLPAVV APGRPSEGLS ETEVEWGPGV WPVDGGA--A bmy_22194T0/1-564 -AAAAIGELE PPGGELPAVV APGRPSEGLS ETKVEWGPGV WPVDGGAAGA BACU009063/1-543 -AAAAIGDLE PPGGELPAVV APGRPSEGLS ETEVEWGPGV WPVDGGAAGA 401 450 ENSP00000331647/1-501 VAAPCQPRPT HFVALMVTEP GLQAEVTKAQ EYLVHVAPHC ANFLVPSQNL ENSBTAP00000015528/1-498 V-GPRQPRPT HFVALMVTEP ELRAEVAKVQ EDLVRGAPAC AAFTVPAEAL ENSTTRP00000006238/1-487 V-GPRRPRPT HFVALMVTEA ELQAGVAKVQ EELVRNAPAC AAFTVPAQAL bmy_22194T0/1-564 V-GPRQPRPT HFVALMVTEA ELQAGVAKVQ EELVRNAPAS AAFTVPAQAL BACU009063/1-543 V-GPRQPRPT HFVALMVTEA ELQAGVAKVQ EELVRNAPAC AAFTVPAQAL 451 500 ENSP00000331647/1-501 HLTLALLRLA GAGEEAAAIG ALRRALLAPG LNAPPRLSFR KLVLLGPHVL ENSBTAP00000015528/1-498 HLTLALLRLA GPGEVAAAVT ALRHALSDPR LEVPLRLRFG RLVCLGSHVL ENSTTRP00000006238/1-487 HLTVALLRLA GPGEVAAAVD ALRGVLSDPG LQIPQRLRFR RLVFLGSRVL bmy_22194T0/1-564 HLTVALLRLA GPGEIAAAVD ALRGVLSDPG LRVPPRLRFR RLVFLGSRVL BACU009063/1-543 HLTVALLRLA GPGELAAAVD ALRGVLSDPG LQVPPRLRFR RLVFLGSHVL 501 550 ENSP00000331647/1-501 CAPPSPTLES MAQVLSQRLE AEGLSTLQSP GQLHPHLTVA KVPHGSQVHL ENSBTAP00000015528/1-498 CAPPSPPLES LAQRLSQRLE AEGLRVLQPL GGIRPHLTLA KVPQGAQVCL ENSTTRP00000006238/1-487 CAPPDPPLEN MAQVLSQRLE AEGLRVLQPC RGLHPHLTLA KVPQGSQVGL bmy_22194T0/1-564 CAPPDPPLEN MARVLSQRLE AGGLRVLQPC RGLHPHLTLA KVPQGSQVGL BACU009063/1-543 CAPPDPPLEN MARVLSQRLE AGGLRVLQPC RGLHPHLTLA KVPQGSQVGL 551 600 ENSP00000331647/1-501 PKLEFTLSQE VGCQPLQTLW LCRIGRTGGP FQPLAEIRLE ------ ENSBTAP00000015528/1-498 P--EVSPRQE LGSQPLGTLW LCRVGRAGGT YQALAELPLG ------ ENSTTRP00000006238/1-487 PKPGFSPRQE LGSQPLGKLW LCRVGRSGGT YQAVAEIPLV S----- bmy_22194T0/1-564 PKPGFSSRQE LGSQPLGKLW LCRVGRSGGT YQAVAEIPLV SQPQKK BACU009063/1-543 PKPGFSPRQE LGSQPLGKLW LCRVGRSGGT YQAVAEIPLV SQPQKK