KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:15 2014 Check: 00 .. Name: ENSP00000431885/1-1187 Len: 1260 Check: 482 Weight: 1.00 Name: ENSTTRP00000009057/1-1182 Len: 1260 Check: 7394 Weight: 1.00 Name: ENSBTAP00000015532/1-1185 Len: 1260 Check: 1084 Weight: 1.00 Name: bmy_13747T0/1-1210 Len: 1260 Check: 1170 Weight: 1.00 Name: BACU002500/1-1132 Len: 1260 Check: 6170 Weight: 1.00 // 1 50 ENSP00000431885/1-1187 MPLRHWG-MA RGSKPVGDGA QPMAAMGGLK VLLHWAGPGG GEPWVTFSES ENSTTRP00000009057/1-1182 MPLCQWGATT RGRKPDGDGA QPMATRGGLK VLLHWAGPGG GEPWVTFSED ENSBTAP00000015532/1-1185 MPLCQWRATT RGRKPSGDGA QPMATREGLK VLLHWAGPSG GEPWVTFTEP bmy_13747T0/1-1210 MPLCQWGATT RGRKPDGDGA QPVATRGGLK VLLHWAGPGG GEPWVTFSEA BACU002500/1-1132 ---------- ---------- --MATRGGLK VLLHWAGPGG GEPWVTFSEA 51 100 ENSP00000431885/1-1187 SLTAEEVCIH IAHKVGITPP CFNLFALFDA QAQVWLPPNH ILEIPRDASL ENSTTRP00000009057/1-1182 TLTAEEVCLH IAHKVGITPP CFNLFALFDV QAQVWLPPNH VLDMSRDSSL ENSBTAP00000015532/1-1185 TLTAEDVCIH VAHKVGITPP CFNLFALFDA QAQVWLPPNH ILDTSRDSSL bmy_13747T0/1-1210 TLTAEEVCIH IAHKVGITPP CFNLFALFDV QAQVWLPPNH VLDMSRDSSL BACU002500/1-1132 TLTAEEVCIH IAHKVGITPP CFNLFALFDV QAQVWLPPNH VLDMSRDSSL 101 150 ENSP00000431885/1-1187 MLYFRIRFYF RNWHGMNPRE PAVYRCGPPG TEASSDQTAQ GMQLLDPASF ENSTTRP00000009057/1-1182 MLYFRMRFYF RNWHGMHPQE PAVYRCGPPG SEPSSEQAEQ GVQLLDPASF ENSBTAP00000015532/1-1185 TLYFRMRFYF RNWHGTNPQE PAVYRCGPPG AETSSEQAEQ GVQLLDPASF bmy_13747T0/1-1210 MLHFRMRFYF RNWHGMHPQE PAVYRCGPPG SEPSSEQAEQ GVQLLDPASF BACU002500/1-1132 MLHFRMRFYF RNWHGMHPQE PAVYRCGPPG SEPSSEQAEQ GVQLLDPASF 151 200 ENSP00000431885/1-1187 EYLFEQGKHE FVNDVASLWE LSTEEEIHHF KNESLGMAFL HLCHLALRHG ENSTTRP00000009057/1-1182 EYLFEQGKHE FINDVASLWE LSSEEEIHHF QNESLGMAFL HLCHLALCHG ENSBTAP00000015532/1-1185 EYLFEQGKHE FVNDVASLWE LSSEEEIHHF QNESLGMALL HLCHLALRNG bmy_13747T0/1-1210 EYLFEQGKHE FINDVASLWE LSSQEEIHHF QNESLGMAFL HLCHLALCHG BACU002500/1-1132 EYLFEQGKHE FVNDVASLWE LSSEEEIHHF QNESLGMAFL HLCHLALCHG 201 250 ENSP00000431885/1-1187 IPLEEVAKKT SFKDCIPRSF RRHIRQHSAL TRLRLRNVFR RFLRDFQPGR ENSTTRP00000009057/1-1182 VPLEKVAKKI SFKDCIPRSF RQQIRQHNAL TRLRLRSIFR KFLRAFQPGC ENSBTAP00000015532/1-1185 VPLEKVAKKT SFKDCIPRSF RRQMRQHNAL TRLRQRSIFR KFLRAFQPGC bmy_13747T0/1-1210 VPLEKVAKKI RLEE------ --QIRQQNAL TRLRLRSIFR KFLRAFQPGC BACU002500/1-1132 VPLEKVAKKI SFKDCIPRSF RQQIRQHNAL TRLRLRSIFR KFLRAFQPGC 251 300 ENSP00000431885/1-1187 LSQQMVMVKY LATLERLAPR FGTERVPVCH LRLLAQAEGE PCYIRDSGVA ENSTTRP00000009057/1-1182 LSQQVVMVKY LATLERLAPR FGTERVPVCH LELLAQAEGE PCYIRDGGQA ENSBTAP00000015532/1-1185 LSQQVVMVKY LATLERLAPR FGTERVPVCH LELLSQADGE PCYIREGGQA bmy_13747T0/1-1210 LSQQVVMVKY LATLERLAPR FGTERVPVCH LELLAQAEGE PCYIRVGGQA BACU002500/1-1132 LSRQVVMVKY LATLERLAPR FGTERVPVCH LELLAQAEGE PCYIRVGGQA 301 350 ENSP00000431885/1-1187 PTDPGPESAA GPPTHEVLVT GTGGIQWWPV EEEVNKEEGS SGSSGRNPQA ENSTTRP00000009057/1-1182 PPDPGPESAA GPPTHEVLVS GTDGIQWRLV QA-----EGG GGGGRRMPHA ENSBTAP00000015532/1-1185 PPDPGSESAA GPPTHEVLVS GTEGIRWRLV PAEGPA-DGG AGGGSRMPDA bmy_13747T0/1-1210 PSDPGPESAA GPPTHEVLVS GTDGIRWRLV QAEGPS-DGG GGGGRRMPHA BACU002500/1-1132 PPDPGPESAA GPPTHEVLVS GTDGIRWRLV QAEGPSAGGG GGGGGRMPHA 351 400 ENSP00000431885/1-1187 SLFGKKAKAH KAVGQPADRP REPLWAYFCD FRDITHVVLK EHCVSIHRQD ENSTTRP00000009057/1-1182 GPSGKKAKAQ EVGNQPVYRP QEAPWAYFCD FQDITHVVLK ERRVSIHCQD ENSBTAP00000015532/1-1185 DPSGKKMKAE EVGSEPVDRP RESPWSYFCD FQDITHMVLK ERHVSIHCQD bmy_13747T0/1-1210 GPSGKKAKAQ EVGNQPVDRP QEAPWAYFCD FQDITHVVLK ERRVSIHCQD BACU002500/1-1132 GASGKKAKAQ EVGSQPVDRP QEAPWAYFCD FQDITHVVLK ERRVSIHCV- 401 450 ENSP00000431885/1-1187 NKCL------ ---------- ---------- ---------- -----ELSLP ENSTTRP00000009057/1-1182 NKCL------ ---------- ---------- ---------- -----ELTLP ENSBTAP00000015532/1-1185 NKCL------ ---------- ---------- ---------- -----ELTLP bmy_13747T0/1-1210 NKCLVGPGTG GRAGRGGRVG GRWEPLACDI CLMLSSPPPP PPGLQDLTLP BACU002500/1-1132 ---------- ---------- ---------- ---------- -----GPAVP 451 500 ENSP00000431885/1-1187 SRAAALSFVS LVDGYFRLTA DSSHYLCHEV AP--PRLVMS IRDGIHGPLL ENSTTRP00000009057/1-1182 SRAAALSLVS LVDGYFRLTA DSSHYLCHEV AP--PRLVMS IQDGIHGPLL ENSBTAP00000015532/1-1185 SRAAALSLVS LVDGYFRLTA DSNHYLCHEV AP--PRLVMS IQDGIHGPLL bmy_13747T0/1-1210 SRAAALSLVS LVDGYFRLTA DSSHYLCHEV AP--PRLVMS IQDGIHGPLL BACU002500/1-1132 PGALMVP--- ---------- -----LCPPP PPPPPR---- ---------- 501 550 ENSP00000431885/1-1187 EPFVQAKLRP EDGLYLIHWS TSHPYRLILT VAQRSQAPDG MQSLRLRKFP ENSTTRP00000009057/1-1182 EPFVLARLQP EDGLYLIHWS TSHLHRLILT VAQRDQAP-G VKGLHLRKFP ENSBTAP00000015532/1-1185 EPFVLAKLKP EAGLYLIHWS TSHLHRLILT VAQRDQAP-G TKGLRLRKFP bmy_13747T0/1-1210 EPFVLAKLQP GDGLYLIHWS TSHLNRLILT VAQRDQAP-G VKGLHLRKFP BACU002500/1-1132 EPFVLAKLQP GDGLYLIHWS TSHLNRLILT VAQRDQAC-G VKGLHLRKFP 551 600 ENSP00000431885/1-1187 IEQQDGAFVL EGWGRSFPSV RELGAALQGC LLRAGDDCFS LRRCCLPQPG ENSTTRP00000009057/1-1182 IELQAGTVTL EGWDRSFPSV RELQVALQGC SLRVGDNCFS LRHCXXXXXX ENSBTAP00000015532/1-1185 IELQAGTVML EGWGRSFPSV RDLRAALQDC SLRAGNDCFS LRRCCLPRPG bmy_13747T0/1-1210 IELQAGTVAL EGWDRSFPSV RELRVALQGC SLRAGDDCFS LRHCCLPRPG BACU002500/1-1132 IELQAGTVAL EGWDRSFPSV RELRVALQGC SLRAGDDCFS LRHCCLPRPG 601 650 ENSP00000431885/1-1187 ETSNLIIMRG ARASPRTLNL SQLSFHRVDQ KEITQLSHLG QGTRTNVYEG ENSTTRP00000009057/1-1182 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000015532/1-1185 EISNLIVTRG PQASTRPLNL SHLSFYRVRQ EDITQLSHLG QGTRTNVYEG bmy_13747T0/1-1210 EISNLIVTRG PRASSRPLNL SHLSFHRVRQ EDITQLSHLG QGTRTNVYEG BACU002500/1-1132 EISNLIVTRG PRASSRPLNL SHLSFHRVRQ EDITQLSHLG QGTRTNVYEG 651 700 ENSP00000431885/1-1187 RLRVEGSGDP EEGKMDDEDP LVPGRDRGQE LRVVLKVLDP SHHDIALAFY ENSTTRP00000009057/1-1182 XXXX-XXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000015532/1-1185 LLRV-GGGGP EEDKADGEEP PTPAGDRGQE LRVVLKVLDP SHHDIALAFY bmy_13747T0/1-1210 LLRV-GGGGP EEDKVDGGDP PMPGAGCEQE LRVVLKVLDP SHHDIALAFY BACU002500/1-1132 LLRV-GGGGP EEDKVDGGDP PMPGAGCEQE LRVVLKVLDP SHHDIALAFY 701 750 ENSP00000431885/1-1187 ETASLMSQVS HTHLAFVHGV CVRGPE---- ---------- ---------- ENSTTRP00000009057/1-1182 XXXXXXXXXX XXXXXXXXXX XXXXXXX--- ---------- ---------- ENSBTAP00000015532/1-1185 ETASLMSQVS HVHLAFVHGV FVHGSE---- ---------- ---------- bmy_13747T0/1-1210 ETASLMSQVS HVHLVFVHGI YVHGSETPPR VLPPGTLEGK LVGSTCNGWA BACU002500/1-1132 ETASLMSQVS HVHLVFVHGI YVHGSE---- ---------- ---------- 751 800 ENSP00000431885/1-1187 --NIMVTEYV EHGPLDVWLR RERGHVPMAW KMVVAQQLAS ALSYLENKNL ENSTTRP00000009057/1-1182 --XIMVTEYV EHGPLDVWLR RERGRVPLAW KLTVAQQLAS ALSYLEDKSL ENSBTAP00000015532/1-1185 --NIMVTEYV EHGPLDVWLR RERGRVPLAW KLAVAQQLAS ALSYLEDKSL bmy_13747T0/1-1210 FADIMVTEYV EHGPLDVWLR RERGHVPLAW KLAVAQQLAS ALSYLEDKSL BACU002500/1-1132 --NIMVTEYV EHGPLDVWLR RERGHVPLAW KLAVAQQLAS ALSYLEDKSL 801 850 ENSP00000431885/1-1187 VHGNVCGRNI LLARLGLAEG TSPFIKLSDP GVGLGALSRE ERVERIPWLA ENSTTRP00000009057/1-1182 VHSNVCGRNI LLARLGLAEG TSPFIKLSDP GVGLSVLSRE ERVERIPWTA ENSBTAP00000015532/1-1185 VHGNVCGRNI LLARLGLAEG TSPFIKLSDP GVGLSALSRE ERVERIPWTA bmy_13747T0/1-1210 VHSNVCGRNI LLARLGLAEG TSPFIKLSDP GVGLSALSRE ERVERIPWTA BACU002500/1-1132 VHSNVCGRNI LLARLGLAEG TSPFIKLSDP GVGLSALSRE ERVERIPWTA 851 900 ENSP00000431885/1-1187 PECLPGGANS LSTAMDKWGF GATLLEICFD GEAPLQSRSP SEKEHFYQRQ ENSTTRP00000009057/1-1182 PECLSGGANS LSTAADKWGF GATLLEICFD GEAPLQGRSP SEKERFYQKQ ENSBTAP00000015532/1-1185 PECLSGGANS LSTAADKWGF GATLLEICFD GEAPLQGRSP SEKERFYQKQ bmy_13747T0/1-1210 PECLSGGANS LSTAADKWGF GATLLEICFD GEAPLQGRSP SEKERFYQKQ BACU002500/1-1132 PECLSGGANS LSTAADKWGF GATLLEICFD GEAPLQGRSP SEKERFYQKQ 901 950 ENSP00000431885/1-1187 HRLPEPSCPQ LATLTSQCLT YEPTQRPSFR TILRDLTRLQ PH---NLADV ENSTTRP00000009057/1-1182 QKLREPSCPE LAILTSQCLT YEPAQRPSFR TILRDLTQLQ PQ---NLVDV ENSBTAP00000015532/1-1185 HKLPEPSCPE LATLTSQCLT YEPAQRPSFR TILRDFTQLQ PQ---NLADV bmy_13747T0/1-1210 HKLPEPSCPE LATLTSRCLT YEPAQRPSFR TILRDLTQLQ PQTLPDLVDV BACU002500/1-1132 HKLPEPSCPE LATLTSQCLT YEPAQRPSFR TILRDLTQLQ PQTLPDLVDV 951 1000 ENSP00000431885/1-1187 LTVNPDSPAS DPTVFHKRYL KKIRDLGEGH FGKVSLYCYD PTNDGTGEMV ENSTTRP00000009057/1-1182 LSVNPDSPAS DPTVFHKRYL KKIRDLGEGH FGKVSLYCYD PTNDGTGEMV ENSBTAP00000015532/1-1185 LSVSPDSLAS DPTVFHKRYL KKIRDLGEGH FGKVSLYCYD PTNDGTGEMV bmy_13747T0/1-1210 LSVNPDSPAS DPTVFHKRYL KKIRDLGEGH FGKVSLYCYD PTNDGTGEMV BACU002500/1-1132 LSVNPDSPAS DPTVFHKRYL KKIRDLGEGH FGKVSLYCYD PTNDGTGEMV 1001 1050 ENSP00000431885/1-1187 AVKALKADCG PQHRSGWKQE IDILRTLYHE HIIKYKGCCE DQGEKSLQLV ENSTTRP00000009057/1-1182 AVKALKAGCG PQLRTGWRRE IEILRTLYHQ HIVKYKGCCE DQGEKSVQLV ENSBTAP00000015532/1-1185 AVKALKAGCG PQLRTGWRRE IDILRKLYHK HIVKYKGCCE DQGEKSIQLV bmy_13747T0/1-1210 AVKALKAGCG PQLRTGWRRE IEILRTLYHE HIVKYKGCCE DQGEKSVQLV BACU002500/1-1132 AVKALRADCG PQLRTGWRRE IEILRTLYHE HIVKYKGCCE DQGEKSVQLV 1051 1100 ENSP00000431885/1-1187 MEYVPLGSLR DYLPRHSIGL AQLLLFAQQI CEGMAYLHAQ HYIHRDLAAR ENSTTRP00000009057/1-1182 MEYVPLGSLR DYLPRHNVGL AQLLLFSQQI CEGMAYLHAQ HYVHRDLAAR ENSBTAP00000015532/1-1185 MEYMPLGSLR DYLPRHNVGL VQLLLFSLQI CEGMAYLHSQ HYVHRDLAAR bmy_13747T0/1-1210 MEYVPLGSLR DYLPRHNVGL AQLLLFSQQI CEGMAYLHAQ HYVHRDLAAR BACU002500/1-1132 MEYVPLGSLR DYLPRHNVGL AQLLLFSQQI CEGMAYLHAQ HYVHRDLAAR 1101 1150 ENSP00000431885/1-1187 NVLLDNDRLV KIGDFGLAKA VPEGHEYYRV REDGDSPVFW YAPECLKEYK ENSTTRP00000009057/1-1182 NVLLDNNRLV KIGDFGLAKA VPEGHEYYCV REDGDSPVFW YAPECLKECK ENSBTAP00000015532/1-1185 NVLLDNNRLV KIGDFGLTKA VPEGHEYYCV REDGDSPVFW YAPECLKECK bmy_13747T0/1-1210 NVLLDNNRLV KIGDFGLAKA VPEGHEYYCV REDGDSPVFW YAPECLKECK BACU002500/1-1132 NVLLDNNRLV KIGDFGLAKA VPEGHEYYCV REDGDSPVFW YAPECLKECK 1151 1200 ENSP00000431885/1-1187 FYYASDVWSF GVTLYELLTH CDSSQSPPTK FLELIGIAQG QMTVLRLTEL ENSTTRP00000009057/1-1182 FYYASDVWSF GVTMYELLTY CDSTQSPPSK FIELIGLTQG QMTVLRLTEL ENSBTAP00000015532/1-1185 FYYASDVWSF GVLMYELLTY CDSSQSPPSK FIELIGLTQG QMTVLRLTEL bmy_13747T0/1-1210 FYYASDVWSF GVTMYELLTY CDSTQSPPS- ---------- ---------- BACU002500/1-1132 FYYASDVWSF GVTMYELLTY CDSTQSPPSK FIELIGLTQG QMTVLRLTEL 1201 1250 ENSP00000431885/1-1187 LERGERLPRP DKCPCEVYHL MKNCWETEAS FRPTFENLIP ILKTVHEKYQ ENSTTRP00000009057/1-1182 LERGERLPQP EKCPCEIYCL MKNCWKAEAS FRPTFQNLIP ILKTVHEKYQ ENSBTAP00000015532/1-1185 LERGERLPQP EKCPSEIYCL MKDCWKAEAS FRPTFQNLVP ILRSYHEKYQ bmy_13747T0/1-1210 ---------- ------IYCL MKNCWKAEAS FRPTFQNLIP ILKTVHEKYQ BACU002500/1-1132 LERGERLPQP EKCPCEIYCL MKNCWKAEAS FRPTFQNLIP ILKTVHEKYQ 1251 1300 ENSP00000431885/1-1187 GQAPSVFSVC ENSTTRP00000009057/1-1182 GQAASVFSVC ENSBTAP00000015532/1-1185 GQAPSVFSVC bmy_13747T0/1-1210 GQAPSVFSVC BACU002500/1-1132 GQPPSVFSVC