KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:17 2014 Check: 00 .. Name: ENSP00000317636/1-991 Len: 1020 Check: 4651 Weight: 1.00 Name: ENSBTAP00000015555/1-987 Len: 1020 Check: 5999 Weight: 1.00 Name: ENSTTRP00000015049/1-946 Len: 1020 Check: 6409 Weight: 1.00 Name: bmy_15345T0/1-579 Len: 1020 Check: 4231 Weight: 1.00 Name: BACU011519/1-1012 Len: 1020 Check: 373 Weight: 1.00 // 1 50 ENSP00000317636/1-991 MSSHHTTFPF DPERRVRSTL KKVFGFDSFK TPLQESATMA VVKGNKDVFV ENSBTAP00000015555/1-987 -MSTHPSSPF DPERRVRSTL KKVFGFDSFK TPLQEKAIMA VVKGDKDVFV ENSTTRP00000015049/1-946 ---------- ---------- ---------- ---------- ----DKDVFV bmy_15345T0/1-579 ---------- ---------- ---------- ---------- ---------- BACU011519/1-1012 -MSTNPSSPF DPERRVRSTL KKVFGFDSFK TPLQERATMA VVKGDKDVFV 51 100 ENSP00000317636/1-991 CMPTGAGKSL CYQLPALLAK GITIVVSPLI ALIQDQVDHL LTLKVRVSSL ENSBTAP00000015555/1-987 CMPTGAGKSL CYQLPALLAK GITIVVSPLI ALIQDQVDHL LALKVRVSSL ENSTTRP00000015049/1-946 CMPTGAGKSL CYQLPALLAK GITIVISPLI ALIQDQVDHL LALKVQVSTL bmy_15345T0/1-579 ---------- ---------- ---------- ---------- ---------- BACU011519/1-1012 CMPTGAGKSL CYQLPALLAK GITIVISPLI ALIQDQVDHL LSLKVRVSSL 101 150 ENSP00000317636/1-991 NSKLSAQERK ELLADLEREK PQTKILYITP EMAASSSFQP TLNSLVSRHL ENSBTAP00000015555/1-987 NSKLSVQERK ELLSDLEQEK PQTKLLYITP EMAASTSFQP TLNSLVSRHL ENSTTRP00000015049/1-946 NSKLSAQQKK ELLCDLEQEK PWTKLLYITP EMAASASFQP ALNSLASRHL bmy_15345T0/1-579 ---------- ---------- ---------- ---------- ---------- BACU011519/1-1012 NSKLSAQQKK ELLSDLEQEK PWTKLLYITP EMAASASFQP ALNSLASRHL 151 200 ENSP00000317636/1-991 LSYLVVDEAH CVSQWGHDFR PDYLRLGALR SRLGHAPCVA LTATATPQVQ ENSBTAP00000015555/1-987 LSYLVVDEAH CVSQWGHDFR PDYLRLGALR SRLADAPCVA LTATATPQVR ENSTTRP00000015049/1-946 LSYLVVDEAH CVSQWGHDFR PDYLRLGALR PRLAHAPCVA LTATATPQVR bmy_15345T0/1-579 ---------- ---------- ---------- ---------- ---------- BACU011519/1-1012 LSYLVVDEAH CVSQWGHDFR PDYLRLGALR PRLAHAPCVA LTATATPQVR 201 250 ENSP00000317636/1-991 EDVFAALHLK KPVAIFKTPC FRANLFYDVQ FKELISDPYG NLKDFCLKAL ENSBTAP00000015555/1-987 EDVFAALHLK QPVATFKTPC FRANLFYDVQ FKELLPDPYG NLRDFCLKAL ENSTTRP00000015049/1-946 EDVFAALQLK QPVATFKTPC FRANLFYDVQ FKELLPDPYG NLRDFCLKAL bmy_15345T0/1-579 ---------- ---------- ---------- ---------- ---------- BACU011519/1-1012 EDVFAALQLK QPVATFKTPC FRANLFYDVQ FKELLPDPYG NLRDFCLKAL 251 300 ENSP00000317636/1-991 GQEADKGLSG CGIVYCRTRE ACEQLAIELS CRGVNAKAYH AGLKASERTL ENSBTAP00000015555/1-987 GQKADKGLSG CGIIYCRTRE ACEQLATELS YRGVNAKAYH AGLKAPERTL ENSTTRP00000015049/1-946 GQKADKGLSG CGIVYCRTRE ACEQLAIELS YRGVNAKAYH AGLKAPERTL bmy_15345T0/1-579 ---------- ---------- ---------- ---------- ---------- BACU011519/1-1012 GQKADKGLSG CGIVYCRTRE ACEQLAIELS YRGVNAKAYH AGLKAPERTL 301 350 ENSP00000317636/1-991 VQNDWMEEKV PVIVATISFG MGVDKANVRF VAHWNIAKSM AGYYQESGRA ENSBTAP00000015555/1-987 VQNEWMEEKV PVIVATISFG MGVDKANVRF VAHWNIAKSM AGYYQESGRA ENSTTRP00000015049/1-946 VQNEWMEEKV PVIVATISFG MGVDKANVRF VAHWNIAKSM AGYYQESGRA bmy_15345T0/1-579 ---------- ---------- ---------- ---------- ---------- BACU011519/1-1012 VQNEWMEEKV PVIVATISFG MGVDKANVRF VAHWNIAKSM AGYYQESGRA 351 400 ENSP00000317636/1-991 GRDGKPSWCR LYYSRNDRDQ VSFLIRKEVA KLQEKRGNKA SDKATIMAFD ENSBTAP00000015555/1-987 GRDGKPSWCR LYYSRSDRDQ VSFLIRKEVA KLQEKRGNKA SDKAAVLAFD ENSTTRP00000015049/1-946 GRDGKPSWCR LYYSRNDRDQ VSFLIRKEVA KLQEKRGNKA SDKAAVLAFD bmy_15345T0/1-579 ---------- ---------- ---------- ---------- ---------- BACU011519/1-1012 GRDGKPSWCR LYYSRNDRDQ VSFLIRKEVA KLQEKRGNKA SDKAAVLAFD 401 450 ENSP00000317636/1-991 ALVTFCEELG CRHAAIAKYF GDALPACAKG CDHCQNPTAV RRRLEALERS ENSBTAP00000015555/1-987 ALVAFCEESG CRHAAIAKYF GDSPPACTKG CDCCQNPTGV RKQLDALEQR ENSTTRP00000015049/1-946 ALVAFCEESG CRHAAIAKYF GDAPPACTKG CDHCQNPAAV RKQLDALEQS bmy_15345T0/1-579 ---------- CRHAAIAKYF GDAPPACTKG CDHCQNPAAV RKQLDALEQS BACU011519/1-1012 ALVAFCEESG CRHAAIAKYF GDASPACTKG CDHCQNPAAV RKQLDALEQS 451 500 ENSP00000317636/1-991 SSWSKTCIGP SQGNGFDPEL YEGGRKGYGD FSRYDEGSGG SGDEGRDEAH ENSBTAP00000015555/1-987 SSWNKTCIGP SQGNGYDPEL YEGGRRGYGG FSRYDEGSGG SGDEGRDEAQ ENSTTRP00000015049/1-946 CSWSKTSIAL SQGNGFDPEL YEGGRRGYGG FSRYNEGSEG SGDEGRDEAH bmy_15345T0/1-579 SSWSKTAIGP SQGNGFDPEL YEGGRRGYGG FSRYDEGSEG SGDEGRDEAH BACU011519/1-1012 SSWSKTAIGP SQGNGFDPEL YEGGRRGYGG FSRYGEGSEG SGDEGRDEAH 501 550 ENSP00000317636/1-991 KREWNLFYQK QMQLRK---- ---------- ---------- GKDPKIE--- ENSBTAP00000015555/1-987 KREWNLFYQK QMRLRK---- ---------- ---------- GKDPKTE--- ENSTTRP00000015049/1-946 KREWNLFYQK QMRLRK---- ---------- ---------- GKDPKIE--- bmy_15345T0/1-579 KREWNLFYQK QMRLRK---- ---------- ---------- GKDPKIE--- BACU011519/1-1012 KREWNLFYQK QMRLRKVSTE MPPGLVSGCG RRMPRWGVGD AREQKVEWKD 551 600 ENSP00000317636/1-991 -EFVPPDENC PLKEASSRRI PRLTVKAREH CLRLLEEALS SNRQSTRTAD ENSBTAP00000015555/1-987 -EFVPPDEDC PLREAASRKI PRLTVKAREH CLGLLEEALS SNRQAAGSTD ENSTTRP00000015049/1-946 -EFVPPDADC PLREASSRKI PRLTVKAREH CLGLLEEALS SNRQAAGSTD bmy_15345T0/1-579 -EFVPPDADC PLKEASSRKI PRLTVKAREH CLGLLEEALS SNRQAAGSTD BACU011519/1-1012 SPLLPPDADC PLKEASSRKI PRLTVKAREH CLGLLEEALS SNHQAAGSTD 601 650 ENSP00000317636/1-991 EADLRAKAVE LEHETFRNAK VANLYKASVL KKVADIHRAS KDGQPYDMGG ENSBTAP00000015555/1-987 GLDLQAKAVE LEHETFRNAK VANLYKASVL KKVAEIHRAS KDGQLYRVGG ENSTTRP00000015049/1-946 GSDLQAKAVD LEHETFRNAK VANLYKASVL KKVAEIHKAS KDGQLYDVGG bmy_15345T0/1-579 GSDLQAKAVE LEHETFRNAK VANLYKASVL KKVAEIHKAS KDGQLYDVGG BACU011519/1-1012 GSDLQAKAVE LEHETFRDAK VANLYKASVL KKVAEIHKAS KDGQLYDVGG 651 700 ENSP00000317636/1-991 SAKSCSAQAE PPEPNEYDIP PASHVYSLKP KRVGAGFPKG SCPFQTATEL ENSBTAP00000015555/1-987 GASSCSAQAE PPEPTEHDIL PASQVYSLKP KRVGAGFPKG SCLFQTATEL ENSTTRP00000015049/1-946 GARSCSAQAE PPEPTEYDIR PASQVYSLKP KRVGAGFPKG SCTFQTAPQL bmy_15345T0/1-579 GARSCSAQAE PPQPTEYDIR PASQVYSFKP KRVGAGFPKG SCTFQTASEL BACU011519/1-1012 GARSCSAQAE PPEPTEYDIR PASQVYSFKP KRVGAGFPKG SCTFQTASEL 701 750 ENSP00000317636/1-991 METTRIREQA PQPERGGEHE PPSRPCGLLD EDGSEPLPGP RGEVPGGSAH ENSBTAP00000015555/1-987 MEKTWVPEQE PRPKQGGERG APSQPCDCQG AEPAKSLPGP QGEAPRSGAV ENSTTRP00000015049/1-946 MEKTRLKEQD PRPVQGGEQE PPGQPRGRQD EDRAEPLPGP RAEAPGSGAH bmy_15345T0/1-579 MEKTQLKEQD PRPVQGGGQE PPGRPRGRQD EEGAEPLPGP RGGAPGSGAH BACU011519/1-1012 MEKMQLKEQD PRPVQGGGQE PPGRPRGRQD EEGA----GP RGEAPGSGAH 751 800 ENSP00000317636/1-991 YGGPSPEKKA KSSSGGSSLA KGRASKKQQL LATAAHKDSQ SIARFFCRRV ENSBTAP00000015555/1-987 CRGPSPEEE- RGPARGSPTA KARVNKKQQL LAAAALKDSQ NIARFFCRRT ENSTTRP00000015049/1-946 CGASSPEKKA KGPSPGSPTA KARVGKKQQL LAAAALKDSQ NIARFFYQRT bmy_15345T0/1-579 CGGPSPEKKA KGPSRGSPTA KARVGKKQQL LAAAALKDSQ NISRFFYQRT BACU011519/1-1012 CGGPSPEKEA KGPSRGSPTA KARVGKKQQL LAAAALKDSQ NIARFFYQRT 801 850 ENSP00000317636/1-991 ESPALLASAP EAEGACPSCE GVQGPPMAPE KYTGEEDGAG GHSPAPPQTE ENSBTAP00000015555/1-987 KSPPPVTAAP GADGTSPSRD GARGPLTFLE KGSGQEDGAV GHLAARPETK ENSTTRP00000015049/1-946 ESSPPLTSAP GAEGASPSRD GARGPLTAPE KCTGEEDGAM GHLAAHPQTE bmy_15345T0/1-579 ERSPPLTSAP GAEGASPSRD GARGPLTAPE KCTGEEDGAM ERLAAHPQTE BACU011519/1-1012 ERSPPLTSAP GAEGARPSRD GARGPLPAPE KCTGEEDGAM GRLAAHPQTE 851 900 ENSP00000317636/1-991 ECLRERPSTC -PPRDQGTPE VQPTPAKDTW KGKRPRSQQE NPESQPQKRP ENSBTAP00000015555/1-987 ECAEEGPSAC -PLRDQRPPE GQPSPTEEAQ RGKRPRPQQE SPGSQAQKRP ENSTTRP00000015049/1-946 ECSEEGPSAC LLLRDQRPPE GQPTPTKEAQ RGKRPRPQQE NPESQAQKRP bmy_15345T0/1-579 ECSKDGPSAC -PLRDQRPPE GQPTPTKEAQ RGKRPRPQQE NPESQAQKRP BACU011519/1-1012 ECSEDGPSAF -PLRDQRPPE GQPTPTKEAQ RGKRPRPQQE NPESQAQKRP 901 950 ENSP00000317636/1-991 RPSAKPSVVA EVKGSVSASE QGTLNPTAQD PFQLSAPGVS LKEAANVVVK ENSBTAP00000015555/1-987 RPSAKASILA EAKGSVSASD QRPSIP--QG SCQLLAPSIS LKEAANVVVK ENSTTRP00000015049/1-946 CPSAKVPILA ETKGSVSASD RGSVKP--QG SCQLLAPGIS LKEAANIVVK bmy_15345T0/1-579 CPSAKVSVLA ETKGSISASD QGSLNP--QG SCQLLAPGIS LKEAANVVVK BACU011519/1-1012 RPSAKVSVLA ETKGSISASD QGSLNP--QG SCQLLATGIS LKEAANVVVK 951 1000 ENSP00000317636/1-991 CLTPFYKEGK FASKELFKGF ARHLSHLLTQ KTSPGRSVKE EAQNLIRHFF ENSBTAP00000015555/1-987 CLTPFYKEGK FASKELFKAF ARHLSHSLTQ NPCPGRSVKE EAQDVIKQLF ENSTTRP00000015049/1-946 CLTPFYKEGK FASKELFKAF ARHLSHSLTQ NPSPGRSVKE EAQNVIKQFF bmy_15345T0/1-579 CLTPFYKEGK FASKELFKAF ARHLSHSLTQ NPSPGRSVKE EAQNVIKQLF BACU011519/1-1012 CLTPFYKEGK FASKELFKAF ARHLSHSLTQ NPSPGRSVKE EAQNVIKQLF 1001 1050 ENSP00000317636/1-991 HGRARCESEA DWHGLCGPQR ENSBTAP00000015555/1-987 HGRARCESEA DWHGLCGPQR ENSTTRP00000015049/1-946 HGRARCESEA DWHGLCGLQR bmy_15345T0/1-579 HGRARCESEA DWHGLCGPQR BACU011519/1-1012 HGRARCESEA DWHGLCGPQR