KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:18 2014 Check: 00 .. Name: bmy_09648T0/1-830 Len: 977 Check: 5020 Weight: 1.00 Name: ENSP00000397026/1-908 Len: 977 Check: 2129 Weight: 1.00 Name: ENSTTRP00000005820/1-869 Len: 977 Check: 9542 Weight: 1.00 Name: ENSBTAP00000015563/1-908 Len: 977 Check: 2352 Weight: 1.00 Name: BACU018623/1-868 Len: 977 Check: 8177 Weight: 1.00 // 1 50 bmy_09648T0/1-830 ---------- ---------- ---------- ---------- ---------M ENSP00000397026/1-908 MKIIFPILSN PVFRRTVKLL LCLLWIGYSQ GTTHVLRFGG IFEYVESGPM ENSTTRP00000005820/1-869 ---------- ---------- ---------- ---------G IFEYVESGPM ENSBTAP00000015563/1-908 MKIISPVLSN PVFRRTIKLL LCLLWIGYSQ GTTHVLRFGG IFEYVESGPM BACU018623/1-868 ---------- ---------- ---------- ---------G IFEYVESGPM 51 100 bmy_09648T0/1-830 GAEELAFRFA VNTINRNRTL LPNTTLTYDT QKINLYDSFE ASKKACDQLS ENSP00000397026/1-908 GAEELAFRFA VNTINRNRTL LPNTTLTYDT QKINLYDSFE ASKKACDQLS ENSTTRP00000005820/1-869 GAEELAFRFA VNTINRNRTL LPNTTLTYDT QKINLYDSFE ASKKACDQLS ENSBTAP00000015563/1-908 GAEELAFRFA VNTINRNRTL LPNTTLTYDT QKINLYDSFE ASKKACDQLS BACU018623/1-868 GAEELAFRFA VNTINRNRTL LPNTTLTYDT QKINLYDSFE ASKKACDQLS 101 150 bmy_09648T0/1-830 LGVAAIFGPS HSSSANAVQS ICNALGVPHI QTRWKHQVSD NKDSFYVSLY ENSP00000397026/1-908 LGVAAIFGPS HSSSANAVQS ICNALGVPHI QTRWKHQVSD NKDSFYVSLY ENSTTRP00000005820/1-869 LGVAAIFGPS HSSSANAVQS ICNALGVPHI QTRWKHQVSD NKDSFYVSLY ENSBTAP00000015563/1-908 LGVAAIFGPS HSSSANAVQS ICNALGVPHI QTRWKHQVSD NKDSFYVSLY BACU018623/1-868 LGVAAIFGPS HSSSANAVQS ICNALGVPHI QTRWKHQVSD NKDSFYVSLY 151 200 bmy_09648T0/1-830 PDFSSLSRAI LDLVQFFKWK TVTVVYDDST GLIRLQELIK APSRYNLRLK ENSP00000397026/1-908 PDFSSLSRAI LDLVQFFKWK TVTVVYDDST GLIRLQELIK APSRYNLRLK ENSTTRP00000005820/1-869 PDFSSLSRAI LDLVQFFKWK TVTVVYDDST GLIRLQELIK APSRYNLRLK ENSBTAP00000015563/1-908 PDFSSLSRAI LDLVQFFKWK TVTVVYDDST GLIRLQELIK APSRYNLRLK BACU018623/1-868 PDFSSLSRAI LDLVQFFKWK TVTVVYDDST GLIRLQELIK APSRYNLRLK 201 250 bmy_09648T0/1-830 IRQLPADTKD AKPLLKEMKR GKEFH----- ---------- -ALAMGMMTE ENSP00000397026/1-908 IRQLPADTKD AKPLLKEMKR GKEFHVIFDC SHEMAAGILK QALAMGMMTE ENSTTRP00000005820/1-869 IRQLPADTKD AKPLLKEMKR GKEFHVIFDC SHEMAAGILK QALAMGMMTE ENSBTAP00000015563/1-908 IRQLPADTKD AKPLLKEMKR GKEFHVIFDC SHEMAAGILK QALAMGMMTE BACU018623/1-868 IRQLPADTKD AKPLLKEMKR GKEFHVIFDC SHEMAAGILK QALAMGMMTE 251 300 bmy_09648T0/1-830 YYHYIFTTLD LFALDVEPYR YSGVNMTGFR ILNTENTQVS SIIEKWSMER ENSP00000397026/1-908 YYHYIFTTLD LFALDVEPYR YSGVNMTGFR ILNTENTQVS SIIEKWSMER ENSTTRP00000005820/1-869 YYHYIFTTLD LFALDVEPYR YSGVNMTGFR ILNTENTQVS SIIEKWSMER ENSBTAP00000015563/1-908 YYHYIFTTLD LFALDVEPYR YSGVNMTGFR ILNTENTQVS SIIEKWSMER BACU018623/1-868 YYHYIFTTLD LFALDVEPYR YSGVNMTGFR ILNTENTQVS SIIEKWSMER 301 350 bmy_09648T0/1-830 LQAPPKPDSG LLDGFMTVAY IYEVRKEREG TEGYTVVEEM NEGAQDQECK ENSP00000397026/1-908 LQAPPKPDSG LLDGFMT--- ---------- ---------- ---------- ENSTTRP00000005820/1-869 LQAPPKPDSG LLDGFMT--- ---------- ---------- ---------- ENSBTAP00000015563/1-908 LQAPPKPDSG LLDGFMT--- ---------- ---------- ---------- BACU018623/1-868 LQAPPKPDSG LLDGFMT--- ---------- ---------- ---------- 351 400 bmy_09648T0/1-830 EADEILSDAM NSGNTGIYSV VNSHALRLLG HTQMPSTDAA LMYDAVHVVS ENSP00000397026/1-908 ---------- ---------- ---------- ------TDAA LMYDAVHVVS ENSTTRP00000005820/1-869 ---------- ---------- ---------- ------TDAA LMYDAVHVVS ENSBTAP00000015563/1-908 ---------- ---------- ---------- ------TDAA LMYDAVHVVS BACU018623/1-868 ---------- ---------- ---------- ------TDAA LMYDAVHVVS 401 450 bmy_09648T0/1-830 VGVQQFPQMT VSSLQCNRHK PWRFGTRFMS LIKEAHWEGL TGRITFNKTN ENSP00000397026/1-908 VAVQQFPQMT VSSLQCNRHK PWRFGTRFMS LIKEAHWEGL TGRITFNKTN ENSTTRP00000005820/1-869 VGVQQFPQMT VSSLQCNRHK PWRFGTRFMS LIKEAHWEGL TGRITFNKTN ENSBTAP00000015563/1-908 VGVQQFPQMT VSSLQCNRHK PWRFGTRFMS LIKEAHWEGL TGRITFNKTN BACU018623/1-868 VGVQQFPQMT VSSLQCNRHK PWRFGTRFMS LIKEAHWEGL TGRITFNKTN 451 500 bmy_09648T0/1-830 GLRTDFDLDV ISLKEEGLEK ---------- ---------- ---------- ENSP00000397026/1-908 GLRTDFDLDV ISLKEEGLEK IGTWDPASGL NMTESQKGKP ANITDSLSNR ENSTTRP00000005820/1-869 GLRTDFDLDV ISLKEEGLEK IGTWDPASGL NMTESQKGKP ANITDSLSNR ENSBTAP00000015563/1-908 GLRTDFDLDV ISLKEEGLEK IGTWDPASGL NMTESQKGKP ANITDSLSNR BACU018623/1-868 GLRTDFDLDV ISLKEEGLEK IGTWDPASGL NMTESQKGKP ANITDSLSNR 501 550 bmy_09648T0/1-830 --------EE PYVLFKKSDK PLYGNDRFEG YCIDLLRELS TILGFTYEIR ENSP00000397026/1-908 SLIVTTILEE PYVLFKKSDK PLYGNDRFEG YCIDLLRELS TILGFTYEIR ENSTTRP00000005820/1-869 SLIVTTILEE PYVLFKKSDK PLYGNDRFEG YCIDLLRELS TILGFTYEIR ENSBTAP00000015563/1-908 SLIVTTILEE PYVLFKKSDK PLYGNDRFEG YCIDLLRELS TILGFTYEIR BACU018623/1-868 SLIVTTILEE PYVLFKKSDK PLYGNDRFEG YCIDLLRELS TILGFTYEIR 551 600 bmy_09648T0/1-830 LVEDGKYGAQ DDANGQWNGM VRELIDHKAD LAVAPLAITY VREKVIDFSK ENSP00000397026/1-908 LVEDGKYGAQ DDANGQWNGM VRELIDHKAD LAVAPLAITY VREKVIDFSK ENSTTRP00000005820/1-869 LVEDGKYGAQ DDANGQWNGM VRELIDHKAD LAVAPLAITY VREKVIDFSK ENSBTAP00000015563/1-908 LVEDGKYGAQ DDANGQWNGM VRELIDHKAD LAVAPLAITY VREKVIDFSK BACU018623/1-868 LVEDGKYGAQ DDANGQWNGM VRELIDHKAD LAVAPLAITY VREKVIDFSK 601 650 bmy_09648T0/1-830 PFMTLGISIL YRKPNGTNPG VFSFLNPLSP DIWMYILLAY LGVSCVLFVI ENSP00000397026/1-908 PFMTLGISIL YRKPNGTNPG VFSFLNPLSP DIWMYILLAY LGVSCVLFVI ENSTTRP00000005820/1-869 PFMTLGISIL YRKPNGTNPG VFSFLNPLSP DIWMYILLAY LGVSCVLFVI ENSBTAP00000015563/1-908 PFMTLGISIL YRKPNGTNPG VFSFLNPLSP DIWMYILLAY LGVSCVLFVI BACU018623/1-868 PFMTLGISIL YRKPNGTNPG VFSFLNPLSP DIWMYILLAY LGVSCVLFVI 651 700 bmy_09648T0/1-830 ARFSPYEWYN PHPCNPDSDV VENNFTLLNS FWFGVGALMQ QAQ------- ENSP00000397026/1-908 ARFSPYEWYN PHPCNPDSDV VENNFTLLNS FWFGVGALMQ QGSELMPKAL ENSTTRP00000005820/1-869 ARFSPYEWYN PHPCNPDSDV VENNFTLLNS FWFGVGALMQ QGSELMPKAL ENSBTAP00000015563/1-908 ARFSPYEWYN PHPCNPDSDV VENNFTLLNS FWFGVGALMQ QGSELMPKAL BACU018623/1-868 ARFSPYEWYN PHPCNPDSDV VENNFTLLNS FWFGVGALMQ QGSELMPKAL 701 750 bmy_09648T0/1-830 ---------- -FQKIILK-- --NVKFVLLQ ARAGSRY--- ---------- ENSP00000397026/1-908 STRIVGGIWW FFTLIIISSY TANLAAFLTV ERMESPIDSA DDLAKQTKIE ENSTTRP00000005820/1-869 STRIVGGIWW FFTLIIISSY TANLAAFLTV ERMESPIDSA DDLAKQTKIE ENSBTAP00000015563/1-908 STRIVGGIWW FFTLIIISSY TANLAAFLTV ERMESPIDSA DDLAKQTKIE BACU018623/1-868 STRIVGGIWW FFTLIIISSY TANLAAFLTV ERMESPIDSA DDLAKQTKIE 751 800 bmy_09648T0/1-830 ---------L ALKGKSKIST YDKMWAFMSS RRQSVLVKSN EEGIQRVLTS ENSP00000397026/1-908 YGAVEDGATM TFFKKSKIST YDKMWAFMSS RRQSVLVKSN EEGIQRVLTS ENSTTRP00000005820/1-869 YGTVEDGATM TFFKKSKIST YDKMWAFMSS RRQSVLVKSN EEGIQRVLTS ENSBTAP00000015563/1-908 YGAVEDGATM TFFKKSKIST YDKMWAFMSS RRQSVLVKSN EEGIQRVLTS BACU018623/1-868 YGTVEDGATM TFFKKSKIST YDKMWAFMSS RRQSVLVKSN EEGIQRVLTS 801 850 bmy_09648T0/1-830 DYAFLMESTT IEFVTQRNCN LTQIGGLIDS KGYGVGTPMG SPYRDKVTIA ENSP00000397026/1-908 DYAFLMESTT IEFVTQRNCN LTQIGGLIDS KGYGVGTPMG SPYRDKITIA ENSTTRP00000005820/1-869 DYAFLMESTT IEFVTQRNCN LTQIGGLIDS KGYGVGTPMG SPYRDKITIA ENSBTAP00000015563/1-908 DYAFLMESTT IEFVTQRNCN LTQIGGLIDS KGYGVGTPMG SPYRDKITIA BACU018623/1-868 DYAFLMESTT IEFVTQRNCN LTQIGGLIDS KGYGVGTPMG SPYRDKITIA 851 900 bmy_09648T0/1-830 ILQLQEEGKL HMMKEKWWRG NGCPEEESKE ASALGVQNIG GIFIVLAAGL ENSP00000397026/1-908 ILQLQEEGKL HMMKEKWWRG NGCPEEESKE ASALGVQNIG GIFIVLAAGL ENSTTRP00000005820/1-869 ILQLQEEGKL HMMKEKWWRG NGCPEEESKE ASALGVQNIG GIFIVLAAGL ENSBTAP00000015563/1-908 ILQLQEEGKL HMMKEKWWRG NGCPEEESKE ASALGVQNIG GIFIVLAAGL BACU018623/1-868 ILQLQEEGKL HMMKEKWWRG NGCPEEESKE ASALGVQNIG GIFIVLAAGL 901 950 bmy_09648T0/1-830 VLSVFVAVGE FLYKSKKNAQ LEKRSFCSAM VEELRMSLKC QRRLKHKPQA ENSP00000397026/1-908 VLSVFVAVGE FLYKSKKNAQ LEKRSFCSAM VEELRMSLKC QRRLKHKPQA ENSTTRP00000005820/1-869 VLSVFVAVGE FLYKSKKNAQ LEKRSFCSAM VEELRMSLKC QRRVKHKPQA ENSBTAP00000015563/1-908 VLSVFVAVGE FLYKSKKNAQ LEKRSFCSAM VEELRMSLKC QRRLKHKPQA BACU018623/1-868 VLSVFVAVGE FLYKSKKNAQ LEKRSFCSAM VEELRMSLKC QRRLKHKPQA 951 1000 bmy_09648T0/1-830 PVIVKTEEVI NMHTFNDRRL PGKETMA ENSP00000397026/1-908 PVIVKTEEVI NMHTFNDRRL PGKETMA ENSTTRP00000005820/1-869 PVIVKTEEVI NMHTFNDRRL PGKETMA ENSBTAP00000015563/1-908 PVIVKTEEVI NMHTFNDRRL PGKETMA BACU018623/1-868 PVIVKTEEVI NMHTFNDRRL PGKETM-