KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:18 2014 Check: 00 .. Name: BACU008144/1-252 Len: 356 Check: 103 Weight: 1.00 Name: ENSP00000451406/1-317 Len: 356 Check: 2062 Weight: 1.00 Name: ENSBTAP00000015564/1-317 Len: 356 Check: 9616 Weight: 1.00 Name: bmy_03903T0/1-325 Len: 356 Check: 7567 Weight: 1.00 Name: ENSTTRP00000000746/1-317 Len: 356 Check: 9424 Weight: 1.00 // 1 50 BACU008144/1-252 ---------- --------MW -----LYLAV LV-------- --GLYYLLRW ENSP00000451406/1-317 ---------- --------MW -----LYLAA FV-------- --GLYYLLHW ENSBTAP00000015564/1-317 ---------- --------MW -----LYLAV LL-------- --GLYYLLRW bmy_03903T0/1-325 MACDPMFTPD SKATREVNSW GPKPSCFLPG ALSLTKTWAG EDGIWRLMMG ENSTTRP00000000746/1-317 ---------- --------MW -----LYLAV LV-------- --GLYYLLRW 51 100 BACU008144/1-252 YRE------R QVVSHLQDKF VFITGCDSGF GNLLARQLHL RGLRVLAACL ENSP00000451406/1-317 YRE------R QVVSHLQDKY VFITGCDSGF GNLLARQLDA RGLRVLAACL ENSBTAP00000015564/1-317 YQE------R QVVSHLQDKF VFITGCDSGF GNQLARQLDL RGLRVLAGCL bmy_03903T0/1-325 KEEQRRDILR QVVSHLQDKF VFITGCDSGF GNLLARQLHL RGLRVLAACL ENSTTRP00000000746/1-317 YRE------R QVVSHLQDKF VFITGCDSGF GNLLARQLHL RGLRVLAACL 101 150 BACU008144/1-252 TEQGAEQLRN QTSDRLETVI LDVTKTESIA AATEWVKERV GDRGLWGLVN ENSP00000451406/1-317 TEKGAEQLRG QTSDRLETVT LDVTKMESIA AATQWVKEHV GDRGLWGLVN ENSBTAP00000015564/1-317 TEQGAEQLRN QTSDRLQTVI LDVTKTESIA AATEWVKECV GDRGLWGLVN bmy_03903T0/1-325 TEQGAEQLRN QTSDRLETVI LDVTKTESIA AATEWVKERV GDR------- ENSTTRP00000000746/1-317 TEQGAEQLRN QTSDRLETVI LDVTKTESIA AATEWVKERV GNRGLWGLVN 151 200 BACU008144/1-252 NAGTFHPHGY TEWLKIEAYM NTLKVNLIGL IEVTLSMLPL VRRAQGRIVN ENSP00000451406/1-317 NAGILTPITL CEWLNTEDSM NMLKVNLIGV IQVTLSMLPL VRRARGRIVN ENSBTAP00000015564/1-317 NAGIFHSHGY AEWIKIETYR DTLRVNLIGV IEVTLSMLPL VRKAQGRIVN bmy_03903T0/1-325 ---------- ---------- ----VNLIGL IEVTLNMLPL VRRAQGRIVN ENSTTRP00000000746/1-317 NAGVFHPHGY TEWLKIEACM DTLKVNLIGL IEVTLSMLPL VRRAQGRIVN 201 250 BACU008144/1-252 VSSILGRIAF FGGVYSSTKY GVEAFSDILR P--------- ---------- ENSP00000451406/1-317 VSSILGRVAF FVGGYCVSKY GVEAFSDILR REIQHFGVKI SIVEPGYFRT ENSBTAP00000015564/1-317 VSSILGRIAF FGAVYSCSKY GVEAFSDILR RELQHFGVKV SMVEPGYFRT bmy_03903T0/1-325 VSSILGRIAF FGGVYSSTKY GVEAFSDILR RELQHFGVKI SIVEPGYFRT ENSTTRP00000000746/1-317 VSSILGRIAF FGGVYSCTKY GVQAFSDILR RELQHFGVKI SIIEPGYFRT 251 300 BACU008144/1-252 --SPLDENRE DNGGVLE--P PQQQEELAPP AAEGPQIIAR KQRRNRTAFT ENSP00000451406/1-317 GMTNMTQSLE RMKQSWKEAP KHIKETYGQQ YFDALYNIMK EGLLNCSTNL ENSBTAP00000015564/1-317 AMTDWQKFSE IMKQIWKETP AHIKETYGQK FFDAYHDLMK QGLLSCSTNL bmy_03903T0/1-325 GMTDMQKSSE AVKQVWKEVP VHIKESYGQK FFDTYQDLLK QGMLSCSTNL ENSTTRP00000000746/1-317 GMSDLQKSSE AAKQVWKEVP VHIKESYGQK FFDTYHDLLK QGMLSCSTNL 301 350 BACU008144/1-252 QLQLQQLENV FHST------ ---------- ---------- ---------- ENSP00000451406/1-317 NLVTDCMEHA LTSVHPRTRY SAGWDAKFFF IPLSYLPTSL ADYILTRSWP ENSBTAP00000015564/1-317 NLVTDCMEHA LTSVHPRTRY SAGWDAQFFF VPLSYLPTSL ADYILTRSWP bmy_03903T0/1-325 NLVTDCMEHA LTSVHPRTRY SAGWDAQFFF IPLSYLPTSL ADYILTRSWP ENSTTRP00000000746/1-317 NLVTDCMEHA LTSVHPRTRY SAGWDAKFFF IPLSYLPTSL ADYILTRSWP 351 400 BACU008144/1-252 ------ ENSP00000451406/1-317 KPAQAV ENSBTAP00000015564/1-317 KPAQAV bmy_03903T0/1-325 KPAQAV ENSTTRP00000000746/1-317 KPAQAV