KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:20 2014 Check: 00 .. Name: ENSP00000298248/1-319 Len: 563 Check: 6997 Weight: 1.00 Name: BACU000168/1-507 Len: 563 Check: 174 Weight: 1.00 Name: ENSBTAP00000015575/1-321 Len: 563 Check: 9145 Weight: 1.00 Name: bmy_11031T0/1-415 Len: 563 Check: 441 Weight: 1.00 Name: ENSTTRP00000003354/1-305 Len: 563 Check: 3033 Weight: 1.00 // 1 50 ENSP00000298248/1-319 ---MASSAAG CVVIVGSGVI GRSWAMLFAS GGFQVKLYDI EQQQIRNALE BACU000168/1-507 ---------- ---------- -----MLFAS AGFKVKLYDI EPRQVTHALD ENSBTAP00000015575/1-321 MASPGSSAPG GVAVVGSGLI GRSWAMLFAS AGFRVKLFDI EPRQVTDALV bmy_11031T0/1-415 MRMRTEFERR LCAPFRCGLI GRSWAMLFAS AGFKVKLYDI EPRQVTHALD ENSTTRP00000003354/1-305 ---------- -------GLI GRSWAMLFAS AGFKVKLYDI EQRQVTYALD 51 100 ENSP00000298248/1-319 NIRKEMKLLE QAGSLKGSLS VEEQLSLISG CPNIQEAVEG AMHIQE-CVP BACU000168/1-507 SIRKEMKSLE QSGSLKGSLG AEGQLSLISG CSDIREAVEG ALHVQAQVSP ENSBTAP00000015575/1-321 SLRKEMKMLE LSGYLKGELG AEEQLSLISG CSDLREAVEG ALHVQE-CVP bmy_11031T0/1-415 SIRKEMKSLE QSGSLKGSLG AEGQLSLISG CSDIREAVEG ALHVQE-CVP ENSTTRP00000003354/1-305 SIRKEMKLLE RSGSLKGSLG AEEQLSLISS CSDIREAVEG ALHVQE-CVP 101 150 ENSP00000298248/1-319 EDLELKKKIF AQLDSI---- ------IDDR VILSSSTSCL MPSKLFAGLV BACU000168/1-507 PDPDILTILM ARRGTDDQDP RRPHLGTGDR GVFQYSQPLL RAGGRPAIQP ENSBTAP00000015575/1-321 ENLELKRKLF AQLDKI---- ------ADDH VILSSSSSCL LPSKLFAGLA bmy_11031T0/1-415 ENLELKKQLF AQLDGI---- ------VGDQ VVLSSSSSCL LPSRLFSGLV ENSTTRP00000003354/1-305 ENLELKKQLF AQLDGI---- ------VGDQ VVLSSSSSCL LPTRLFSGLV 151 200 ENSP00000298248/1-319 HVKQCIVAHP ---------- ---------- ---------- ---------- BACU000168/1-507 DRKGGTFFLH SDVGTDCANV LARRVLRGVS DHELQVGTWA LNLFAINVLM ENSBTAP00000015575/1-321 HVKQCLVAHP ---------- ---------- ---------- ---------- bmy_11031T0/1-415 HVKQCLVAHP VNIVTDCANV LTSRALRGVL DHELHVGTWA LNLFAINVLI ENSTTRP00000003354/1-305 HVKQCLVAHP ---------- ---------- ---------- ---------- 201 250 ENSP00000298248/1-319 ---------- ---------- --VNPPYYIP LVELVPHPET APTTVDRTHA BACU000168/1-507 SGKGNQSGDS GVIRWTFEYR VEVNPPYYVP LVELVPHPET APATVDRTYA ENSBTAP00000015575/1-321 ---------- ---------- --VNPPYYVP LVELVPHPET APATVDRTYA bmy_11031T0/1-415 SGKGNQSGDS GVIRWMFEYR VEVNPPYYVP LVELVPHPET APATVDRTYA ENSTTRP00000003354/1-305 ---------- ---------- --VNPPYYVP LVELVPHPET APATVDRTYA 251 300 ENSP00000298248/1-319 LMKKIGQCPM RVQKEVAGFV LNRLQYAIIS EAWRLVE--- ---------- BACU000168/1-507 LMRKIGQSPV KLTKEVDGFA LNRLQYAVIS EAWRLVE--- ---------- ENSBTAP00000015575/1-321 LMRRVGQSPV RLLREIDGFA LNRLQYAVIA EAWRLVE--- ---------- bmy_11031T0/1-415 LMRKIGQSPV KLTKEVDGFA LNRLQYAVIS EAWRLVERFR CTLLHGSVAC ENSTTRP00000003354/1-305 LMRKIGQSPV RLMKEVDGFA LNRLQYAIIS EAWRLVE--- ---------- 301 350 ENSP00000298248/1-319 ---------- --------EG IVSPSDLDLV MSEGLGMRYA FIGPLETMHL BACU000168/1-507 ---------- --------EG VVSPGDLDLV MSDGLGMRYA FIGPLETMHL ENSBTAP00000015575/1-321 ---------- --------EG VVSPGDLDLV MSDGLGLRYA FIGPLETMHL bmy_11031T0/1-415 SAHTCPAETR QSERGSVQEG VVSPGDLDLV MSDGLGMRYA FIGPLETMHL ENSTTRP00000003354/1-305 ---------- --------XX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 351 400 ENSP00000298248/1-319 NAEGMLSYCD RYSEGIKHVL QTFGPIPEFS RATAEKVNQD ---------- BACU000168/1-507 NAEGMLSYCD RYSEGMKHVL KTFGPIPEFS GAAAEKVHQV SLLLLGPGKE ENSBTAP00000015575/1-321 NAEGMLSYCD RYGEGMKRVL KTFGPVPEFS GATAEKVHQA ---------- bmy_11031T0/1-415 NAEGMLSYCD RYSEGMKHVL KTFGPIPEFS GAAAEKVHQA ---------- ENSTTRP00000003354/1-305 XXXXMLSYCD RYSEGMKHVL KTFGPVPEFS GAAAEKVHQA ---------- 401 450 ENSP00000298248/1-319 ---------- ---------- ---------- --------MC MKVPDD---- BACU000168/1-507 KPRPPNLGQS EEKVTAGVSF SPLEKGKQSD LVRCLPGKAA IKMNDNNNSR ENSBTAP00000015575/1-321 ---------- ---------- ---------- --------MC VKVPDD---- bmy_11031T0/1-415 ---------- ---------- ---------- --------MC VKVPDD---- ENSTTRP00000003354/1-305 ---------- ---------- ---------- --------MC VKVPDD---- 451 500 ENSP00000298248/1-319 ----PEHL-- ---------- ---------- ---------- ---------- BACU000168/1-507 TAMVPYHLQH SLTAPLRGQH KRIRPRSSAS RGSAVPRVQD LVVSHFHATP ENSBTAP00000015575/1-321 ----AEHL-- ---------- ---------- ---------- ---------- bmy_11031T0/1-415 ----PEHL-- ---------- ---------- ---------- ---------- ENSTTRP00000003354/1-305 ----PEHL-- ---------- ---------- ---------- ---------- 501 550 ENSP00000298248/1-319 ---------- --AARRQW-- ------RDEC LMRLAKLK-- ---------- BACU000168/1-507 VPQTLGQHRA PEGTRGHWAG LEAEEQADVP VPRLSTAKTS PIVSLSTHRL ENSBTAP00000015575/1-321 ---------- --AARRAW-- ------RDGC LMRLAQLK-- ---------- bmy_11031T0/1-415 ---------- --AARREW-- ------RDRC LMRLARLK-- ---------- ENSTTRP00000003354/1-305 ---------- --AARREW-- ------RDRC LMRLARLK-- ---------- 551 600 ENSP00000298248/1-319 ------SQVQ PQ- BACU000168/1-507 VRAPGPHRLD PRI ENSBTAP00000015575/1-321 ------HQL- PQ- bmy_11031T0/1-415 ------SQPQ PQ- ENSTTRP00000003354/1-305 ------SQLQ PQ-