KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:20 2014 Check: 00 .. Name: ENSP00000272342/1-926 Len: 964 Check: 3031 Weight: 1.00 Name: ENSBTAP00000015577/1-899 Len: 964 Check: 4545 Weight: 1.00 Name: ENSTTRP00000004558/1-905 Len: 964 Check: 4162 Weight: 1.00 Name: bmy_08750T0/1-934 Len: 964 Check: 3324 Weight: 1.00 Name: BACU013729/1-934 Len: 964 Check: 1796 Weight: 1.00 // 1 50 ENSP00000272342/1-926 MSRRRKHDDS PSPKKTPHKT VAAEECGSVV EPGRRRLRSA RGSWPCGARE ENSBTAP00000015577/1-899 MSRRRKHGDS SGLKQTPRKA MATEEGSLVF ESGKRRLRAA RGSGPQGPGE ENSTTRP00000004558/1-905 MSRRRKYADS PGLKNTPRKA AATEECSSVV ETGKRRLRSA RGSGPCGAGE bmy_08750T0/1-934 MSRRRKYGDS PGLKNTPRKA AATEECSSVV ETGKRRLRSA RGSGPCGAGE BACU013729/1-934 MSRRRKYGDS PGLKNTPRKA AATEECSSVV ETGKRRLRSA RGSGPCGAGE 51 100 ENSP00000272342/1-926 GPPGPVRQRE QPPTAALCSK SNPE------ ---------- ---------- ENSBTAP00000015577/1-899 RPPRPLPQQE QPPVAASCRK SNTE------ ---------- ---------- ENSTTRP00000004558/1-905 RPLRPLPQQE QPPVAASCSK SNPE------ ---------- ---------- bmy_08750T0/1-934 RPPRPLPQQE QPPVAASCSK SNPEGETWAG GPPWASAPQL QKPARDQETP BACU013729/1-934 RPPRPLPQQE QPPVAASCSK SNPEGETWAA GPPWASAPQL QKPARDRETP 101 150 ENSP00000272342/1-926 --ERYETPKR ALKMDSLSSS FSSPNDPDGQ NDIFWDQNSP LTKQLGKGRK ENSBTAP00000015577/1-899 --ERYETPKR MLQMDLLSST FSSPNDPDGQ NDIFWDQNSP MTKQLDKGRK ENSTTRP00000004558/1-905 --EMYETPKR MLQMDLLSSA FSSPNDPDGQ NDIFWDQNSP MTKQLGKGRK bmy_08750T0/1-934 GAEMYETPKR MLQMDLLSST FSSPNDPDGQ NDIFWDQNSP MTKQLGKGRK BACU013729/1-934 GAEMYETPKR MLQMDLLSST FSSPNDPDGQ NDIFWDQNSP MTKQLGKGRK 151 200 ENSP00000272342/1-926 KQIYTTDSDE ISHIVNRIAP QDEKPTTNSM LDMWIGETAI PCTPSVAKGK ENSBTAP00000015577/1-899 KQLYTTDSDE ISHIVNRIAP QDEKPTTDSM LGVWIGDTAI PCTPSVAKGK ENSTTRP00000004558/1-905 KRIYTTDSDE ISHIVNRIAP QDEKPTTDSM LGVWIGATAI PCTPSVAKGK bmy_08750T0/1-934 KQTYTTDSDE ISHIVKRIAP QDEKPTTDSM LGVWIGATAI PCTPSVAKGK BACU013729/1-934 KQIYTTDSDE ISHIVKRIAP QDEKPTTDSM LGVWIGATAI PCTPSVAKGK 201 250 ENSP00000272342/1-926 SRAKISCTKL KTQSQEEELM KLAKQFDKNM EELDVIQEQN KRNYDFTQMI ENSBTAP00000015577/1-899 SRTKLSCTKL KSQNQEEELM KLAKQFDKNM EELDVIQEQD KRNHDLIQMI ENSTTRP00000004558/1-905 SRAKLSCTKL KSQNQEEELM KLAKQFDKNM EELDVIQEQN KRNHDLIQMI bmy_08750T0/1-934 SRAKLSCTKL KSQNQEEELM KLAKQFDKNM EELDVIQEQN KRNHDLIQMI BACU013729/1-934 SRAKLSCAKL KSQNQEEELM KLAKQFDKNM EELDVIQEQN KRNHDLIQMI 251 300 ENSP00000272342/1-926 SETEILSNYK DNIQMWSLHN IVPEIDNA-T KKPIKGNTKI SVANNQNSSQ ENSBTAP00000015577/1-899 SEAETSLNCR DNVQMQLLCD TVPEIDKALL KKPVKENTKI SVVNDQTSSQ ENSTTRP00000004558/1-905 SEAETLNNYR DNVQMQLLHD IVPEIDNAMI KKPVKEN-RI FVVNDQNSSQ bmy_08750T0/1-934 SEAETLNNYR DSVQTQLLHD IVPEIDNAMI KKPVKEN-RI FVVNDQNSSQ BACU013729/1-934 SEAETLNNYR DSVQTQLLHD IVPEIDNAMI KKPVKEN-RI FVVNDQNSSQ 301 350 ENSP00000272342/1-926 KPFDQIAEAA FNAIFDGSTQ KCSGQLSQEL PEAFWSTSNT TFVKTNALKE ENSBTAP00000015577/1-899 KPFDQNAEAA FIAMFDGSTQ KCSGQLSQDL SDSFLKTSNT TFGKKNTLKE ENSTTRP00000004558/1-905 KPFDQNAEAA FIAIFDGSTQ KCSGQLSQDL SDAFLSTSST TFGKKNALKE bmy_08750T0/1-934 KPFDQNAEAA FIAIFDGSTQ KCSGRLSQDL SDAFLNTSNT TFGKKNALKE BACU013729/1-934 KPFDQNAEAA FIAIFDGSTQ KCSGRLSQDL SDVFLNTSNT TFGKKNALKE 351 400 ENSP00000272342/1-926 EKIITNETLV IEKLSNKTPR SLSSQVDTPI MTKSCVTSCT KEPETSNKYI ENSBTAP00000015577/1-899 EKIITNESVV TENLPSKTLG SLSHQVDNPG MTKSYVTFCT KEPGTFNKHI ENSTTRP00000004558/1-905 ENIITNETLV TEKLPNKTQG SLSHQVDNPG MTKSYVTSCT KEPGAFNKHS bmy_08750T0/1-934 ENIITNETLI TEKLPNKTEG SLSRQVDNPG MTKSHVTSCA KEPGAFNKHI BACU013729/1-934 ENIITNETLV TEKLPNKTKG SLSRQVDNPG MTKSHVTACT KEPGAFNKHI 401 450 ENSP00000272342/1-926 DAFTTSDFED DWENLLGSEP FAMQNIDMPE LFPS-KTAHV TDQKEICTFN ENSBTAP00000015577/1-899 DTFTTSDFED DWENLLSNEP FVMQNIETSE LFPAPKTIQI ADQKEMCSFN ENSTTRP00000004558/1-905 DTFTTSDFED DWENLLSNEP FVMQNIEMSE LFAAPETAQI TDQKEICTFN bmy_08750T0/1-934 DTFTTSDFED DWENLLNNEP FVMQNIEMSE LFPAPETAQI TDQKEICTFN BACU013729/1-934 DTFTTSDFED DWENLLNNEP FVMQNIEMSE LFAAPETAQI TDQKEICTFN 451 500 ENSP00000272342/1-926 SKTVKNTSRA NTSPDARLGD SKVLQDLSSK TYDRELIDAE -YRFSPNSN- ENSBTAP00000015577/1-899 SKEAKSKSGM NKSVDVKLRD SKILQGLPSN TWNNELTDAE KYRFSPKPND ENSTTRP00000004558/1-905 SKNGKSKSGM NTSLDTRLRD SKILQDLPSK TWNSELTDAA KYRFSPKPND bmy_08750T0/1-934 SKNGKSKSGM NTSLDTRLRD SKILQDLPSE TWNSELTDAA KYRFSPKPND BACU013729/1-934 SKNGKSKSGM NTSLDTRLRD SKILQDLPSK TWNSELTDAA KYRFSPQPND 501 550 ENSP00000272342/1-926 KSNKLS-TGN KMKFENSSNK IVIQDEIQNC IVTSNLTKIK EDI---LTNS ENSBTAP00000015577/1-899 KPNKLSTTGN KMKLEKSFNI VVNQDKIQDC AVASNLTKVN EDTHTKFNCK ENSTTRP00000004558/1-905 KPNKFSSTGN KMKLEKSFNT IVVQDKIQDC AVASNLAKVN EDTHIKFTSN bmy_08750T0/1-934 KPNKLSSTGN KMKLEKSFNT IVVQDKIQDC AVASNLAKVN EHTHIKFTSN BACU013729/1-934 KPNKLSSTGN KMKLEKSFNT IVVQDKIQDC AVASNLAKVN EDTHIKFTSN 551 600 ENSP00000272342/1-926 TEASERKSAL NTRYSNEQKN KCILNQSIKA PVNTDLFGSA NLGSKTSVSN ENSBTAP00000015577/1-899 VNASEKKSAL KPGCS----N KSIFNQSLKV PANVKPFGSA TLGSTTSVCN ENSTTRP00000004558/1-905 VNASEKKSTL NPGCSNEQKN KSIFNQSLKA PTNVEPLGSA TLGNKTSVCN bmy_08750T0/1-934 VNASEKKSTL NPGCSNEQKN KSIFNQSLKA PTNVEPLGSA TLGNKTSVCN BACU013729/1-934 VNASEKKSTL NPGCSNEQKN KSIFNQSLKA PTNVEPLGSA TLGNKTSVCN 601 650 ENSP00000272342/1-926 PNQTSASKVG SFFDDWNDPS FANEIIKACH QLDNTWEADD VDDDLLYQAC ENSBTAP00000015577/1-899 PDQTNGSKLG SFFDDWNDPS FTNEIVKACH QLENSWEADD VDDDILYQAC ENSTTRP00000004558/1-905 PNQTNVSKLR SFFDDWNDTS FTNEIVKACH HLENTWEADD VDDDLLYQVC bmy_08750T0/1-934 PNQTNASKLS SFFDDWNDTS FTNEIVKACH HLENTWEADD VDDDLLYQAC BACU013729/1-934 PNQTNASKLS SFFDDWNDTS FTNEIVKACH HLENTWEADD VDDDLLYQAC 651 700 ENSP00000272342/1-926 DDIERLTQQQ DIRKDSKTSE SICEINNNSE HGAKLTQQQD IRKDSKTSES ENSBTAP00000015577/1-899 DDIERLTQEQ NIRVDSKTSE SVLEINNSSK H--------- ---------- ENSTTRP00000004558/1-905 DDIERLIQEQ DIRVDSKTSE SVFGINNSFK H--------- ---------- bmy_08750T0/1-934 DDIERLTQEQ DIRVDSKTSE SVLGINNSSK H--------- ---------- BACU013729/1-934 DDIERLTQEQ DIRVDSKTSE SVLGINNSSK H--------- ---------- 701 750 ENSP00000272342/1-926 ICEINNNSEH GAKNMFAISK QGSNLVQSKH LNPGSISVQT -SLTNSSQID ENSBTAP00000015577/1-899 ---------- GAKNVFTTPK QGSQFMQSKH LNLNSISAQT SSLANSLQIN ENSTTRP00000004558/1-905 ---------- GAKNVFTTPK QGSPLVQSEH LNLNSVSVQT SSLTDSLQIN bmy_08750T0/1-934 ---------- GAKNVFTTPK QGSQLVQSKR LNLNSVSVRT SSLTNSLQIN BACU013729/1-934 ---------- GAKNVFTTPK QGSQLVQSKH LNLNSDSVQT SSLTDSLQIN 751 800 ENSP00000272342/1-926 KPMKMEKGEM YGNSPRFLGA -TNLTMYSKI SNCQINNLHV SYTNTDVPIQ ENSBTAP00000015577/1-899 KSVKMERGEM YGNSPGFLGA TTNLSIYSKN SDCQISNLHV SCNNPDVPKQ ENSTTRP00000004558/1-905 KSMKMEKREI CGNSPGFLGA TTNLTIYSKN SNCQINNLHV SWNNTDVPKQ bmy_08750T0/1-934 KSMKTEKREI CGNSPGFLGA TTNLTIYSKN SNCQINNLHV SWNNTDVPKQ BACU013729/1-934 KSMKMEKREI CGNSPGFLGA TTNLTIYSKN SNCQINNLHV SWNNTDVPKQ 801 850 ENSP00000272342/1-926 VNSSKLVLPG SSSLNVTSDH MNTEITTYKK KLSTNQPCHK TVTDEAQSNL ENSBTAP00000015577/1-899 VNSSKSVLTG SSSLNVGSHH MSTEIAASKN RLSTLHLSKS TTRGKAQSDL ENSTTRP00000004558/1-905 VNSSKSVLTG SSSLNVSSDH MSTEIAANKK KLSTPHLSHS TVTDEAQSDL bmy_08750T0/1-934 VNSSKSVLTG SSSLNVSSDH MSTEIAANKK KLSTPHLSHS TITDEAQSDL BACU013729/1-934 VNSSKSVLTG SSSLNVSSDH MSTEIAANKK KLSTPHLSHS TVTDEAQSDL 851 900 ENSP00000272342/1-926 NTTVGFSKFT FTRMKNSQIL SQFNQNCITG SMSDTKITQG VEKKKGVNPL ENSBTAP00000015577/1-899 NRAVRLSEYV FTKMKNCPML SPFNNSSVTG SISDTKIAQG LEKNKTVNPL ENSTTRP00000004558/1-905 NRAVRFSKYM FTKIKNSQIL SQFNNNCITG SISGTKITQG LQKNKTVNPL bmy_08750T0/1-934 NRTVRFSKYT FIKMKNSQIL SQFNNNCITG SISGTRMTQG LQKNKTVNPL BACU013729/1-934 NRTVRFSKYT FIKMKNSQIL SQFNNNCITG SISGTKITQG LQKNKTVNPL 901 950 ENSP00000272342/1-926 LEEAVGQQSL VKLSESLKQS SKEEEEKNRK CSPEEIQRKR QEALVRRMAK ENSBTAP00000015577/1-899 PGKAVQQQPL VKFSEPLKQP SKEEEEKNRK CSPEEIQRKR QAALIRRMAK ENSTTRP00000004558/1-905 CGKAVQQQSL GKFSESLKQT SKEEEEKNRK YSPEEIQRKR QEALVRRMAK bmy_08750T0/1-934 CGSTVQQQSL VKFSESLKQT SKEEEEKNRK YSPEEIQRKR QEALVRRMAK BACU013729/1-934 CGKAVQQQSL VKFSESLKQT SKEEEEKNRK YSPEEIQRKR QEALVRRMAK 951 1000 ENSP00000272342/1-926 ARASSVNAAP TSFL ENSBTAP00000015577/1-899 AQASSVKKGR ---- ENSTTRP00000004558/1-905 AQASSVKTAP TFL- bmy_08750T0/1-934 AQASSVKKDS SHLT BACU013729/1-934 AQASSVKKDS SHLT