KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:21 2014 Check: 00 .. Name: ENSTTRP00000007766/1-445 Len: 550 Check: 6707 Weight: 1.00 Name: ENSP00000337446/1-445 Len: 550 Check: 7605 Weight: 1.00 Name: ENSBTAP00000015578/1-448 Len: 550 Check: 8512 Weight: 1.00 Name: bmy_12740T0/1-474 Len: 550 Check: 5198 Weight: 1.00 Name: BACU007012/1-505 Len: 550 Check: 7319 Weight: 1.00 // 1 50 ENSTTRP00000007766/1-445 ---------- ---------- ---------M SKLSGEP-AR DLERSLPAVA ENSP00000337446/1-445 ---------- ---------- ---------M SKLPREL-TR DLERSLPAVA ENSBTAP00000015578/1-448 ---------- ---------- ---------M SKLSGDLLAR DLERSLPAVA bmy_12740T0/1-474 ---------- ---------- ---------M SKLSGEP-AR DLERSLPAVA BACU007012/1-505 MQDLSQPPRL PAAVLLRPGP LCLEVGAARM SKLSREP-AR DLERSLPAVA 51 100 ENSTTRP00000007766/1-445 SLGSSLSHSQ SLSSRFLPPP -REKRRSISD VRRTFCLFVT FDLLFISLLW ENSP00000337446/1-445 SLGSSLSHSQ SLSSHLLPPP --EKRRAISD VRRTFCLFVT FDLLFISLLW ENSBTAP00000015578/1-448 SLGSSLSHSQ SLSSHLLPPP LSEKRRAISD VRRTFCLFVT FDLLFISLLW bmy_12740T0/1-474 SLGSSLSHSQ SLPSHFLPPP -REKRGAISD ---------- ---------- BACU007012/1-505 SLGSSLSHSQ SLSSRFLPPP -REKRRAISD VRRTFCLFVT FDLLFISLLW 101 150 ENSTTRP00000007766/1-445 IIELNTNTGI QKNLEQEIVH YSFKTSFFDI LVLAAFRFSG LLLGYAVLRL ENSP00000337446/1-445 IIELNTNTGI RKNLEQEIIQ YNFKTSFFDI FVLAFFRFSG LLLGYAVLRL ENSBTAP00000015578/1-448 IIELNTNTGI QKNLEQEIIN YRFKTSFFDI FVLAFFRFSG LLLGYAVLRL bmy_12740T0/1-474 -----TNTGI QKNLEQEIIH YSFKTSFFDI FVLAFFRFSG LLLGYAVLRL BACU007012/1-505 IIELNTNTGI QKNLEQEIIQ YSFKTSFFDI FVLAFFRFSG LLLGYAVLRL 151 200 ENSTTRP00000007766/1-445 RHWWVIAVTT LVSSAFLIVK VILSELLSKG AFGYLLPIVS FVLAWLETWF ENSP00000337446/1-445 RHWWVIAVTT LVSSAFLIVK VILSELLSKG AFGYLLPIVS FVLAWLETWF ENSBTAP00000015578/1-448 RHWWVIAVTT LVSSAFLIVK VILSELLSKG AFGYLLPIVS FVLAWLETWF bmy_12740T0/1-474 RHWWVIAVTT LVSSAFLIVK VILSELLSKG AFGYLLPIVS FVLAWLETWF BACU007012/1-505 RHWWVIAVTT LVSSAFLIVK VILSELLSKG AFGYLLPIVS FVLAWLETWF 201 250 ENSTTRP00000007766/1-445 LDFKVLPQEA EEERWYLAAQ AAVARGSLIL SGALSEGQFY SPPESAXXXX ENSP00000337446/1-445 LDFKVLPQEA EEERWYLAAQ VAVARGPLLF SGALSEGQFY SPPESFAGSD ENSBTAP00000015578/1-448 LDFKVLPQEA EEERWYLAAQ AAVARGPLLF SGALSEGQFY SPPESFAGSD bmy_12740T0/1-474 LDFKVLPQEA EEERWYLAAQ AAVARGPLLF SGTLSEGQFY SPPESFAGSD BACU007012/1-505 LDFKVLPQEA EEERWYLAAQ AAVARGPLLF SGALSEGQFY SPPESFAGSD 251 300 ENSTTRP00000007766/1-445 XXXXXXXXXX XXXX------ ---------- ---------- ---------- ENSP00000337446/1-445 NESDEEVAGK KSFSA----- ---------- ---------- ---------- ENSBTAP00000015578/1-448 NESDDEIVGK KSFSA----- ---------- ---------- ---------- bmy_12740T0/1-474 NESDEEVVGK KGFSAQAHWS ASCLGPGGSS RSHGTWSQEA RRARETSPDP BACU007012/1-505 NESDEEVVGK KGFSAQAHWS ASCLGPGGSS RSHGTWSQEA RRARETSPDP 301 350 ENSTTRP00000007766/1-445 ---------- ---------- ---------- -----XXXXX XXXXXXXXXX ENSP00000337446/1-445 ---------- ---------- ---------- -----QEREY IRQGKEATAV ENSBTAP00000015578/1-448 ---------- ---------- ---------- -----QEREY VLQGKEAMAV bmy_12740T0/1-474 ASGHLAESGF PPSPVQKEQV GYRPQADPFL PPIPGQEREY ILQGKESMAV BACU007012/1-505 ASGHLAESGF PPSPVQKE-- ---------- -----QEREY ILQGKEAMAV 351 400 ENSTTRP00000007766/1-445 XXXXXXXXXX XXXXXXXEYG DTVYTIEVPF HGKTFILKTF LPCPAELVYQ ENSP00000337446/1-445 VDQILAQEEN WKFEKNNEYG DTVYTIEVPF HGKTFILKTF LPCPAELVYQ ENSBTAP00000015578/1-448 VDQILAQEEN WKFEKNNEYG DTVYTIEIPF HGKTFILKTF LPCPAELVYQ bmy_12740T0/1-474 VDQILAQEEN WKFEKNNEYG DTVYTIEVPF HGKTFILKTF LPCPAELVYQ BACU007012/1-505 VDQILAQEEN WKFEKNNEYG DTVYTIEVPF HGKTFILKTF LPCPAELVYQ 401 450 ENSTTRP00000007766/1-445 EVILQPERMV LWNKTVTACQ ILQRVEDNTL ISYDVSSGAA GGVVSPRDFV ENSP00000337446/1-445 EVILQPERMV LWNKTVTACQ ILQRVEDNTL ISYDVSAGAA GGVVSPRDFV ENSBTAP00000015578/1-448 EVILQPERMV LWNKTVTACQ ILQRVEDNTL ISYDVSSGAA GGVVSPRDFV bmy_12740T0/1-474 EVILQPERMV LWNKTVTACQ ILQRVEDNTL ISYDVSSGAA GGVVSPRDFV BACU007012/1-505 EVILQPERMV LWNKTVTACQ ILQRVEDNTL ISYDVSSGAA GGVVSPRDFV 451 500 ENSTTRP00000007766/1-445 NVRRIERRRD RYLSSGIATT HCAKPPTHKY VRGENGPGGF IVLKSASNPG ENSP00000337446/1-445 NVRRIERRRD RYLSSGIATS HSAKPPTHKY VRGENGPGGF IVLKSASNPR ENSBTAP00000015578/1-448 NVRRIERRRD RYLSAGIATT HCAKPPTHKY VRGENGPGGF IVLKSASNPR bmy_12740T0/1-474 NVRRIERRRD RYLSSGIAAT HCAKPPTHKY VRGENGPGGF IVLKSASNPG BACU007012/1-505 NVRRIERRRD RYLSSGIATT HCAKPPTHKY VRGENGPGGF IVLKSASNPG 501 550 ENSTTRP00000007766/1-445 VCTFIWILNA DLKG---RLP RYLIHQSLAA TMFEFAFHLR QRIGELGARA ENSP00000337446/1-445 VCTFVWILNT DLKG---RLP RYLIHQSLAA TMFEFAFHLR QRISELGARA ENSBTAP00000015578/1-448 VCTFIWILNT DLKG---RLP RYLIHQSLAA TMFEFAFHLR QRIGELGARA bmy_12740T0/1-474 VCTFIWILNA DLKV---GMP ---------- -------GLR GRLCGVEGTL BACU007012/1-505 VCTFIWILNA DLKSLPYSPP PFVL------ ---------- ----------