KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:24 2014 Check: 00 .. Name: ENSP00000219689/1-1352 Len: 1432 Check: 2171 Weight: 1.00 Name: ENSTTRP00000005753/1-1226 Len: 1432 Check: 6194 Weight: 1.00 Name: ENSBTAP00000015592/1-1269 Len: 1432 Check: 9185 Weight: 1.00 Name: bmy_18714T0/1-1284 Len: 1432 Check: 9151 Weight: 1.00 Name: BACU018204/1-1160 Len: 1432 Check: 8548 Weight: 1.00 // 1 50 ENSP00000219689/1-1352 MSKVTAPGSG PPAAASGKEK RSFSKRLFRS GRAGGGGAGG PGASGPAAPS ENSTTRP00000005753/1-1226 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015592/1-1269 ---------- ---------- ---------- ---------- ---------- bmy_18714T0/1-1284 ---------- ---------- ---------- ---------- ---------- BACU018204/1-1160 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000219689/1-1352 SPSSPSSARS VGSFMSRVLK TLSTLSHLSS EGAAPDRGGL RSCFPPGPAA ENSTTRP00000005753/1-1226 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015592/1-1269 ---------- ---------- ---------- ----XDRGGL RSCFPPGPAA bmy_18714T0/1-1284 ---------- ---------- ---------- ---------- ---------- BACU018204/1-1160 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000219689/1-1352 APTPPP-CPP PPASPAPPAC AAEPVPGVAG LRNHGNTCFM NATLQCLSNT ENSTTRP00000005753/1-1226 ---------- ---------- ---PVPGVAG LRNHGNTCFM NATLQCLSNT ENSBTAP00000015592/1-1269 APTPPPSCPP PPASPAPPAC AAEPVPGVAG LRNHGNTCFM NATLQCLSNT bmy_18714T0/1-1284 ---------- ---------- ---------- ---------M NATLQCLSNT BACU018204/1-1160 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000219689/1-1352 ELFAEYLALG QYRAGRPEPS PDPEQPAGRG AQGQGEVTEQ LAHLVRALWT ENSTTRP00000005753/1-1226 ELFAEYMSLG QYRAGRPEPS PDPEQPAGRG AQGQGEVTEQ LAHLVRALWT ENSBTAP00000015592/1-1269 ELFAEYLALG QYRAGRPEPS PDPEQPAGRG EQGQGEVTEQ LAHLVRALWT bmy_18714T0/1-1284 ELFAEYLALG QYRAGRPEPS PDPEQLAGRG AQGQGEVTEQ LAHLVRALWT BACU018204/1-1160 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000219689/1-1352 LEYTPQHSRD FKTIVSKNAL QYRGNSQHDA QEFLLWLLDR VHEDLNHSVK ENSTTRP00000005753/1-1226 LEYTPQHSRD FKSIVSKNAL QYRGNSQHDA QEFLLWLLDR VHEDLNHAVK ENSBTAP00000015592/1-1269 LEYTPQHSRD FKSIVSKNAL QYRGNSQHDA QEFLLWLLDR VHEDLNHAVK bmy_18714T0/1-1284 LEYTPQHSRD FKSIVSKNAL QYRGNSQHDA QEFLLWLLDR VHEDLNHAVK BACU018204/1-1160 ---------- --SIVSKNAL QYRGNSQHDA QEFLLWLLDR VHEDLNHAVK 251 300 ENSP00000219689/1-1352 QSGQPPLK-- --PPSETDMM PEGPSFPVCS TFVQELFQAQ YRSSLTCPHC ENSTTRP00000005753/1-1226 QSGQPPLK-- --PPSETDMM PEGPSFPVCS TFVQELFQAQ YRSSLTCPHC ENSBTAP00000015592/1-1269 QSGQPPLK-- --PPSETDMM PEGPSFPVCS TFVQELFQAQ YRSSLTCPHC bmy_18714T0/1-1284 QGGQPPLK-- --PPSETDMM PEGPSFPVCS TFVQELFQAQ YRSSLTCPHC BACU018204/1-1160 QSGQPPLKVR ARPQGKTDMM PEGPSFPVCS TFVQELFQAQ YRSSLTCPHC 301 350 ENSP00000219689/1-1352 QKQSNTFDPF LCISLPIPLP HTRPLYVTVV YQGKCSHCMR IGVAVPLSGT ENSTTRP00000005753/1-1226 QKQSNTFDPF LCISLPIPLP HTRPLYVTVV YQGKCSHCMR IGVAVPLSGT ENSBTAP00000015592/1-1269 QKQSNTFDPF LCISLPIPLP HTRPLYVTVV YQGKCSHCMR VGVAVPLSGT bmy_18714T0/1-1284 QKQSNTFDPF LCISLPIPLP HTRPLYVTVV YQGKCSHCMR IGVAVPLSGT BACU018204/1-1160 QKQSNTFDPF LCISLPIPLP HTRPLYVTVV YQGKCSHCMR IGVAVPLSGT 351 400 ENSP00000219689/1-1352 VARLREAVSM ETKIPTDQIV LTEMYYDGFH RSFCDTDDLE TVHESDCIFA ENSTTRP00000005753/1-1226 VARLREAVSM ETKIPTDQIV LTEMYYDGFH RSFCDTDDLE TVHESDCIFA ENSBTAP00000015592/1-1269 VARLREAVSV ETKIPTDQIV LTEMYYDGFH RSFCDTDDLE TVHESDCIFA bmy_18714T0/1-1284 XARLREAVSM ETKIPTDQIV LTEMYYDGFH RSFCDTDDLE TVHESDCIFA BACU018204/1-1160 VARLREAVSM ETKIPTDQIV LTEMYYDGFH RSFCDTDDLE TVHESDCIFA 401 450 ENSP00000219689/1-1352 FETPEIFRPE GILSQRGIHL NNNLNHLKFG LDYHRLSSPT QTAAKQGKMD ENSTTRP00000005753/1-1226 FETPEIFRPE GILSQRGIHL NNNLNHLKFG LDHYRLSSST QAAAKQGRAD ENSBTAP00000015592/1-1269 FETPEIFRPE GILSQRGIHL NNNLNHLKFG LDHCRLSS-T QAAAKQGKAD bmy_18714T0/1-1284 FETPEIFRPE GILSQRGIHL NNNLNHLKFG LDHYRLSSST QAAAKQGRAD BACU018204/1-1160 FETPEIFRPE GILSQRGIHL NNNLNHLKFG LDHYRLSSST QAAAKQGRAD 451 500 ENSP00000219689/1-1352 SPTSRAGSDK IVLLVCNRAC TGQQGKRFGL PFVLHLEKTI AWDLLQKEIL ENSTTRP00000005753/1-1226 LTPTTAGSDK IVLLVCNRAC TGQQGKRFGL PFVLHLEKTI AWDLLQREIL ENSBTAP00000015592/1-1269 LPPSRAGSDK IVLLVCNRAC TGQQGKRFGL PFVLHLEKTI AWDLLQKEIL bmy_18714T0/1-1284 LTPARAGSDK IVLLVCNRAC TGQQGKRFGL PFVLHLEKTI AWDLLQREIL BACU018204/1-1160 LTTARAGSDK IVLLVCNRAC SGQQGKRFGL PFVLHLEKTI AWDLLQREIL 501 550 ENSP00000219689/1-1352 EKMKYFLRPT VCIQVCPFSL RVVSVVGITY LLPQEEQPLC HPIVERALKS ENSTTRP00000005753/1-1226 EKMKYFLRPT VGIQVCPFSL RVVSVVGITY LLPQEEQPLC HPTVERALKS ENSBTAP00000015592/1-1269 EKMKYFLRPT VCIQVCPFSL RVVSVVGITY LLPQEEQPLC HPTVERALKS bmy_18714T0/1-1284 EKMKYFLRPT VGIQVCPFSL RVVSVVGITY LLPQEEQPLC HPTVERALKS BACU018204/1-1160 EKMKYFLRPT VGIQVCPFSL RVVSVVGITY LLPQEEQPLC HPTVERALKS 551 600 ENSP00000219689/1-1352 CGPGGTAHVK LVVEWDKETR DFLFVNTEDE YIPDAESVRL QRERHHQPQT ENSTTRP00000005753/1-1226 CGPGGTAHVK LVVEWDKETK DFLFVNTEDE YIPDAESVRL QRERHHQPQT ENSBTAP00000015592/1-1269 CGPGGTAHVK LVVEWDKETK DFLFVNTEDE YIPDAESVRL QKERHHQPQT bmy_18714T0/1-1284 CGPGGTAHVK LVVEWDKETK DFLFVNTEDE YIPDAESVRL QRERHHQPQT BACU018204/1-1160 CGPGGTAHVK LVVEWDKETK DFLFVNTEDE YIPDAESVRL QRERHHQPQT 601 650 ENSP00000219689/1-1352 CTLSQCFQLY TKEE------ ---------- ---------- ---------- ENSTTRP00000005753/1-1226 CTLSQCFQLY TKEE------ ---------- ---------- ---------- ENSBTAP00000015592/1-1269 CTLSQCFQLY TKEE------ ---------- ---------- ---------- bmy_18714T0/1-1284 CTLSQCFQLY TKEERYLCVV ILKPLPAEVT YVDSRSQIDV EKDLVGSRMR BACU018204/1-1160 CTLSQCFQLY TKEE------ ---------- ---------- ---------- 651 700 ENSP00000219689/1-1352 ---------- ---------- -RLAPDDAWR CPHCKQLQQG SITLSLWTLP ENSTTRP00000005753/1-1226 ---------- ---------- -RLAPDDAWR CPHCKQLQQG SITLSLWTLP ENSBTAP00000015592/1-1269 ---------- ---------- -RLAPDDAWR CPHCKQLQQG SITLSLWTLP bmy_18714T0/1-1284 RIVWSSLMLG GERTIKRLEE VRLAPDDAWR CPHCKQLQQG SITLSLWTLP BACU018204/1-1160 ---------- ---------- -RLAPDDAWR CPHCKQLQQG SITLSLWTLP 701 750 ENSP00000219689/1-1352 DVLIIHLKRF RQE--GDRRM KLQNMVKFPL TGLDMTPHVV KRSQSSWSLP ENSTTRP00000005753/1-1226 DVLIIHLKRF RQE--GDKRM KLQNMVKFPL TGLDMTPHVV KRSQSSWSLP ENSBTAP00000015592/1-1269 DVLIIHLKRF RQQQEGDKRM KLQNMVKFPL TGLDMTPHVV KRSQSSWSLP bmy_18714T0/1-1284 DVLIIHLKRF RQE--GDKRM KLQNMVKFPL TGLDMTPHVV KRSQSSWSLP BACU018204/1-1160 DVLIIHLKRF RQE--GDKRM KLQNMVKFPL TGLDMTPHVV KRSQSSWSLP 751 800 ENSP00000219689/1-1352 SHWSPWRRPY GLGRDPEDYI YDLYAVCNHH GTMQGGHYT- ---------- ENSTTRP00000005753/1-1226 SHWSPWRRPY GLGRDPEDYI YDLYAVCNHH GTMQGGHYT- ---------- ENSBTAP00000015592/1-1269 SHWSPWRRPY GLGRDPEDYI YDLYAVCNHH GTMQGGHYT- ---------- bmy_18714T0/1-1284 SHWSPWRRPY GLGRDPEDYI YDLYAVCNHH GTMQGGHYTG LQRERPGACA BACU018204/1-1160 SHWSPWRRPY GLGRDPEDYI YDLYAVCNHH GTMQGGHYTV QWFLQQDPRV 801 850 ENSP00000219689/1-1352 -----AYCKN SVDGLWYCFD DSDVQQLSED EVCTQTAYIL FYQRRTAIPS ENSTTRP00000005753/1-1226 -----AYCKN SVDGLWYCFD DSDVQQLSED EVCTQTAYIL FYQRRTAIPS ENSBTAP00000015592/1-1269 -----AFCKN SVDGLWYCFD DSDVQQLSED EVCTQTAYIL FYQRRTAIPS bmy_18714T0/1-1284 DDSSRPYCKN SVDGLWYCFD DSDVQQLSED EVCTQTAYIL FYQRRTAIPS BACU018204/1-1160 LVIHKAYCKN SVDGLWYCFD DSDVQQLSED EVCTQTAYIL FYQRRTAIPS 851 900 ENSP00000219689/1-1352 WSANSSVAGS TSSSLCEHWV SRLPGSKPAS VTSAASSRRT SLASLSESVE ENSTTRP00000005753/1-1226 WSANSSVAXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000015592/1-1269 WSANSSVAGS TSSSLCEHWV SRLPGSKQAS VTSAASSRRT SLASLSESVE bmy_18714T0/1-1284 WSANSSVAGS TSSSLCEHWV SRLPGSKQAS VTSAASSRRT SLASLSESVE BACU018204/1-1160 WSANSSVAGS TSSSLCEHWV SRLPGSKQAS VTSAASSRRT SLASLSESVE 901 950 ENSP00000219689/1-1352 MTGERSEDDG GFSTRPFVRS VQRQSLSSRS SVTSPLAVNE NCMRPSWSLS ENSTTRP00000005753/1-1226 XXXXXXXXXX GFSTRPFVRS VQRQSLSSRS SVTSPLAVNE NCIRPSWSLS ENSBTAP00000015592/1-1269 MTGERSEDDG GFSTRPFVRS VQRQSLSSRP SVTSPLAVNE NCMRPSWSLS bmy_18714T0/1-1284 MTGERSEDDG GFSTRPFVRS VQRQSLSSRS SVTSPLAVNE NCIRPSWSLS BACU018204/1-1160 MTGERSEDDG GFSTRPFVRS VQRQSLSSRS SVTSPLAVNE NCIRPSWSLS 951 1000 ENSP00000219689/1-1352 AKLQMRSNSP SRFSGDSPIH SSASTLEKIG EAADDKVSIS CFGSLRNLSS ENSTTRP00000005753/1-1226 AKLQMRSSSP SRFSGDSPIH TSASTLEKIG EAVDDKVSIS CFGSLRNLSS ENSBTAP00000015592/1-1269 AKLQMRSSSP SRYSGDSPIH TSASTLEKIG EAMDDKVSIS CFGSLRNLSS bmy_18714T0/1-1284 AKLQMRSSSP SRFSGDSPIH TSASTLEKIG EAVDDKVSIS CFGSLRNLSS BACU018204/1-1160 AKLQMRSSSP SRFSGDSPIH TSASTLEKIG EAVDDKVSIS CFGSLRNLSS 1001 1050 ENSP00000219689/1-1352 SYQEPSDSHS RREHKAVGRA PLAVMEGVFK DESDTRRLNS SVVDTQSKHS ENSTTRP00000005753/1-1226 SYQDSSDSHS RREHKAVGRA PLAVMEGVFK DESDTRKLNS SVVDTQSKSS ENSBTAP00000015592/1-1269 SHQDSSDSHS RREHKAVGRA PLAVMEGVFR DESDTRKLNS SVADTQSRSS bmy_18714T0/1-1284 SYQDSSDSHS RREHKAVGRA PLAVMEGVFK DESDSRKLNS SVVDTQSKSS BACU018204/1-1160 SYQDSSDGHS RREHKAVGRA PLAVMEGVFK DESDTRKLNS SVVDTQSKSS 1051 1100 ENSP00000219689/1-1352 AQGDRLPPLS GPFDNNNQIA YVDQSDSVDS SPVKEVKAPS HPGSLAKKPE ENSTTRP00000005753/1-1226 VQGDPLPPIS GPFDNNNQIA YVDQSDSVDS SPVKEVKPPS QLDSLAKKSE ENSBTAP00000015592/1-1269 AHGDHLPPVS DPFDNNNQIA YVDQSDSVDS SPVKEVKSPS HPGSLAKKPE bmy_18714T0/1-1284 AQGDQLPPIS GPFDNNNQIA YVDQSDSVDS SPVKEVKPPS HPGSLAKKSE BACU018204/1-1160 AQGDQLPPIS GPFDNNNQIA YVDQSDSVDS SPVKEVKPPS HPGSLAKKSE 1101 1150 ENSP00000219689/1-1352 STTKRSPSSK GTSEPEKSLR KGRPALASQE SSLSSTSPSS PLPVKVSLKP ENSTTRP00000005753/1-1226 STASGSPGSR GAPEPDRSLR KGRAVLASQE SSLSSTSPSS PVPVKVSVKP ENSBTAP00000015592/1-1269 STTKRSPSAK GASEPERSLR KGRPALASQE SSLSSTSPSS PVPVKVSVKP bmy_18714T0/1-1284 STARRSPSSR GXPEPDRSLR KGRPVLASQE SSLSNTSPSS PVPVKVSVKP BACU018204/1-1160 SAARRSPSSR GAPEPDRSLR KGRPVLASQE SSLSSTSPSS PVPVKVSVKP 1151 1200 ENSP00000219689/1-1352 SRSRSKADSS SRGSGRHSSP APAQPKKESS PKSQDSVSSP SPQKQKSASA ENSTTRP00000005753/1-1226 SRSRSKADSS SRASGRHSS- -PA-A-KESS PKSQDSVSSP LLQKQKSASS ENSBTAP00000015592/1-1269 SRSRSKADSS SRASGQHSSP APA-PKKESS PKSHESVSSP SLQKQKSASS bmy_18714T0/1-1284 SRSRSKADSS SRASGRHSS- -PA-PKKESS PKSQDSVSSP SLQKQKSASS BACU018204/1-1160 SRSRSKADXX XXXXXXXXXX XXX-XXXXXS PKSQDSVSSP SLQKQKSASS 1201 1250 ENSP00000219689/1-1352 LTYTASSTSA KKASGPATRS PFPPGKSRTS DHSLSREGSR QSLGSDRASA ENSTTRP00000005753/1-1226 LTDSASSSSA KKASGPAPRG PFPPGKSRTS DRSSSREGSR QSLVSDRASV ENSBTAP00000015592/1-1269 LAYTASSTSA KKASGPTPRG PFPPGKSRTS DRSLSREGSR HSLVSDRASV bmy_18714T0/1-1284 LADSASSTST KKASGPAPRG PFPPGKSRTS DRSLSREGSR QSLASDRASV BACU018204/1-1160 LTDSASSTST KKASGPALRG PFPPGKSRTS DRSLSREGSR QSLASDRASV 1251 1300 ENSP00000219689/1-1352 TSTSKPNSPR VSQARAGEGR GAGKHVRSSS MASLRSPSTS IKSGLKRDSK ENSTTRP00000005753/1-1226 TSSPKPSSPR VSQARAGDGR GDGKHVRSSS MASLRSPSMN MKAGLKRDSK ENSBTAP00000015592/1-1269 TSSSKPNSPR VSQARAGDGR ADSRHVRSSS MASLRSPSTS VRAGLKRDSK bmy_18714T0/1-1284 TSSPKPSSPR VSQARAGDGR GDGKHVRSSS MASLRSPSMN MKAGLKRDSK BACU018204/1-1160 TCSPKPSSPR VSQARAGDGR GDGKHVRSSS MASLRSPSMN MKAGLKRDSK 1301 1350 ENSP00000219689/1-1352 SEDKGLSFFK SALRQKETRR STDLGKTALL SKKAGGSSVK SVCKNTGDDE ENSTTRP00000005753/1-1226 SEDKGLSFFK SALRQKETRR STDLGKTTLL SKKVGGSSVK SVSKSAVDDK ENSBTAP00000015592/1-1269 SEDKGLSFFK SALRQKETRR STDLGKTSLL SKKAGGGSVK SVCKSAVDDK bmy_18714T0/1-1284 SEDKGLSFFK SALRQKETRR STDLGKTTLL SKKVGGSSVK SVSKXAVDDK BACU018204/1-1160 SEDKGLSFFK SALRQKETRR STDLGKTSLL SKKVGGSSVK SVSKSAADDK 1351 1400 ENSP00000219689/1-1352 AERGHQPPAS QQPNANTTGK EQLVTKDPAS AKHSLLSARK SKSSQLDSGV ENSTTRP00000005753/1-1226 AEKGSQALGS QQPNVNAVGK EQLASKDPAS AKHSLLSARK SKSSQLDSGV ENSBTAP00000015592/1-1269 AEKGSQAPGS QQPNAIAVGK EPLASKDPSS GKHSLLSTRK SKTSQLDSAA bmy_18714T0/1-1284 AEKGSQALGS QQPNVNAVGK EQLASKDPAS AKHSLLSARK SKSSQLDSGV BACU018204/1-1160 AEKGSQALGS QQPNVNAVGK EQLASKDPAS AKHSLLSARK SKSSQLDSGV 1401 1450 ENSP00000219689/1-1352 PSSPGGRQSA EKSSKKLSSS MQTSARPSQK PQ ENSTTRP00000005753/1-1226 PSSPGCRQSA EKSSKKLPSS MQTNARPSQK PQ ENSBTAP00000015592/1-1269 PSSPGCRQSA EKSSKKLPSS MQTSARPSQK PQ bmy_18714T0/1-1284 PSSPGCRQSA EKSSKKLPSS MQTNARPSQK PQ BACU018204/1-1160 PSSPGCRQSA EKSSKKLPSS MQTNARPSQK PQ