KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:27 2014 Check: 00 .. Name: ENSP00000336775/1-1564 Len: 1578 Check: 3371 Weight: 1.00 Name: ENSBTAP00000015606/1-1547 Len: 1578 Check: 5753 Weight: 1.00 Name: ENSTTRP00000005640/1-1349 Len: 1578 Check: 9393 Weight: 1.00 Name: bmy_06122T0/1-1234 Len: 1578 Check: 6964 Weight: 1.00 Name: BACU019089/1-1288 Len: 1578 Check: 8996 Weight: 1.00 // 1 50 ENSP00000336775/1-1564 MLSWRLQTGP EKAELQELNA RLYDYVCRVR ELERENLLLE EELRGRRGRE ENSBTAP00000015606/1-1547 MLSWRLHTGP EKAELQELNA RLYDYVCRVR ELERENLLLE EELRSRRGQE ENSTTRP00000005640/1-1349 ---------- ---------- ---------- ---------- ---------- bmy_06122T0/1-1234 ---------- ---------- ---------- ---------- ---------- BACU019089/1-1288 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000336775/1-1564 GLWAEGQARC AEEARSLRQQ LDELSWATAL AEGERDALRR ELRELQRLDA ENSBTAP00000015606/1-1547 GLWAEAEARC TEEARGLRRQ LDELSWATAL AQGERDALRR ELRELQLLGE ENSTTRP00000005640/1-1349 ---------- ---------- ---------- ---------- ---------- bmy_06122T0/1-1234 ---------- ---------- ---------- ---------- ---------- BACU019089/1-1288 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000336775/1-1564 EERAARGRLD AELGAQQREL QEALGARAAL EALLGRLQAE RRGLDAAHER ENSBTAP00000015606/1-1547 ETRAARGRLD AELDSQRREL QEELAARAAL EALLGRLQAE RRGLDAARER ENSTTRP00000005640/1-1349 ---------- ---------- ---------- ---------- ---------- bmy_06122T0/1-1234 ---------- ---------- ---------- ---------- ---------- BACU019089/1-1288 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000336775/1-1564 DVRELRARAA SLTMHFRARA TGPAAPPPRL REVHDSYALL VAESWRETVQ ENSBTAP00000015606/1-1547 DVRELRARAA GLTLRYRGRV AGPAAPPLRL RELHEDCALL VTEAWRETVQ ENSTTRP00000005640/1-1349 ---------- ---------- ---------- ---------- --ESWRETVQ bmy_06122T0/1-1234 ---------- ---------- ---------- ---------- ---------- BACU019089/1-1288 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000336775/1-1564 LYEDEVRELE EALRRGQESR LQAEEETRLC AQEA-ALRRE ALGLEQLRAR ENSBTAP00000015606/1-1547 RYEDEVRELE EALRRGRESR REAEEETRLC AQEAEALRRE VLELEQLRAL ENSTTRP00000005640/1-1349 LYEDEVRELD EALRRGQDSR REAEEETRLC AQEAEALRRE VLELEQLRAL bmy_06122T0/1-1234 ---------- ---------- --------MC ---------- ---------- BACU019089/1-1288 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000336775/1-1564 LEDALLRMRE EYGIQAEERQ RVIDCLEDEK ATLTLAMADW LRDYQDLLQV ENSBTAP00000015606/1-1547 LEEELLRVRE ASELQAEERQ REIAYLEDEK AALTLAMADR LRDYQDLVQV ENSTTRP00000005640/1-1349 LEDELLRVRE AYELQAEERQ REIACLEDEK AALTLAMADR LRDYQELVQV bmy_06122T0/1-1234 ---------- ---------- HKMHC----- ---------- ---------- BACU019089/1-1288 ---------- ---------- RKIACLEDEK AALTLAMADR LRDYQELVQV 301 350 ENSP00000336775/1-1564 KTGLSLEVAT YRALLEGESN PEIVIWAEHV ENMPSEFRNK SYHYTDSLLQ ENSBTAP00000015606/1-1547 KTGLSLEVAT YRALLEGESN PEILI-VECI ENMPQEFREK SYQYTTSVLQ ENSTTRP00000005640/1-1349 KTGLSLEVAT YRALLEGESN PEIQILIERI ENVPQEFRNK PYQYTTSVLQ bmy_06122T0/1-1234 ---------- ---------- ---------- -SISTEFRNK PYQYTTSVLQ BACU019089/1-1288 KTGLSLEVAT YRALLEGESN PEIQILTERI ENVPQEFRNK PCRYTTSVLQ 351 400 ENSP00000336775/1-1564 RENERNLFSR QKAPLASFNH SSALYSNLSG HRGSQTGTSI GGDARRGFLG ENSBTAP00000015606/1-1547 KENERNLFPR QKAPPASFRQ SLA------- ---PRSQTPV RSDARRDVLG ENSTTRP00000005640/1-1349 RENERNLFPR QKAHSASFSH SLV------- ---PRSQTAV RSAARRDFLG bmy_06122T0/1-1234 RENERNLFPR QKARSASFNH SLA------- ---PRSQTAV RNAARRDFLG BACU019089/1-1288 RENERNLFPR QKAHSASFNH SLA------- ---PRPRTPV RSAARRDFLG 401 450 ENSP00000336775/1-1564 SGYSSSATTQ QENSYGKAVS SQTNVRTFSP TYGLLRNTEA QVKTFPDRPK ENSBTAP00000015606/1-1547 SGYSSFTTAW QENAYQKTAS GQTNFRTFSP TPGLLRNTEA QLKTFPERPR ENSTTRP00000005640/1-1349 SRYSSFVTAR QENSYEKTAS SQTNFRHFSP TPGLLRNTEA QVKTFPDRPR bmy_06122T0/1-1234 SRYSSFITTP QENSYEKTAS SQTNFRTFSP TPGLLRNTEA QVKTFPDRPK BACU019089/1-1288 SRYSSLITTP QENSYEKTAS RQANFRTFSP TPGLLRNTEA QVKTFPDRPK 451 500 ENSP00000336775/1-1564 AGDTREVPVY IGEDSTIARE SYRDRRDKVA AGASESTRSN ERTVILGKKT ENSBTAP00000015606/1-1547 TEGTKAPPAS SAKESAAAAE PYQERRAEEA AAASEGTWSN ERTVIWGKKT ENSTTRP00000005640/1-1349 TEGIKGPPTS LAKESAVAQE SYQERRDNVV AGAPKSTWSN ERTVILGKKM bmy_06122T0/1-1234 TEGIKGPPTN LAKESAVAQE SYQECRDNVA AGASESTWSN ERTIILGKKM BACU019089/1-1288 TEGIKGPPTN LAKESAVAQE SYQERRDNVA AGASESTWSN ERTITLGKKM 501 550 ENSP00000336775/1-1564 EVKATREQER NRPETIRTKP EEKMFDSKEK ASEERNLRWE ELTKLDKEAR ENSBTAP00000015606/1-1547 EAKATKEQER NRPGTIQTKR EEKMFDSKEK ASEERNLRWE ELTKLDKEAR ENSTTRP00000005640/1-1349 EAKATREQER NRPGAIQTKR EEKMFDSKEK ASEERNLRWE ELTKLDKEAR bmy_06122T0/1-1234 EAKATREQER NRPGTIQTKR EEKMFDSKEK ASEERNLRWE ELTKLDKEAR BACU019089/1-1288 EAKATREQER NRLGTIQTKR EEKMFDSKEK ASEERNLRWE ELTKLDKEAR 551 600 ENSP00000336775/1-1564 QRESQQMKEK AKEKDSPKEK SVREREVPIS LEVSQDRRAE VSPKGLQTPV ENSBTAP00000015606/1-1547 KRESEQMREK AREKESLKEE SVKGREIPIR LEASQDSTAK VAPQDLQTPL ENSTTRP00000005640/1-1349 QRESQQMKEK AKE-ESLKEK SVREREIPIS LEVSQDSTAE AAPQGLQTPL bmy_06122T0/1-1234 KRESQQMKEK AKE-ESL-EK CVREREIPIS LEVSQDSTAE AVPQGLQTPL BACU019089/1-1288 KRESQQMKGK AKE-ESL-EK SVREREIPIS LEVSQDSTAE AAPQGLQTPL 601 650 ENSP00000336775/1-1564 K-DAGGGTGR EAEARELRFR LGTSDATGSL QGDSMTETVA ENIVTSILKQ ENSBTAP00000015606/1-1547 KEDAGDGTGR GVETREAGFT LGASDTTASL KGGSMTETIA ENIVSSILKQ ENSTTRP00000005640/1-1349 KKDAGDGTRR GVETREAGLG LGTSDTAGSL KGNSTTETIA ENIVSSILKQ bmy_06122T0/1-1234 KKDAGDGTHR GVETREAGLR LGTSDTAGSL KGNSMTETIA ENIVSSILKQ BACU019089/1-1288 KKDAGDRTHR GVETREAGLR LGTSDTAGSL KGNSMTETIA ENIVSSILKQ 651 700 ENSP00000336775/1-1564 FTQSPETEAS ADSFPDTKVT YVDRKELPGE RKTKTEIVVE SKLTEDVDVS ENSBTAP00000015606/1-1547 FTHSPEAEAS AESFPDTKVT YVDRKEVPGD RKAKTEIVVE SKLTEEIDIS ENSTTRP00000005640/1-1349 FTHSPETEAS ADSFPDIKVT YVDRKELPGD RKTKTEIVVE SKLTEEVDIS bmy_06122T0/1-1234 FTHSPETEAS ADSFPDTKVT YVDRKELPGD RQTKTELVVE SKLTEEVDIS BACU019089/1-1288 FTHSPETEAS ADSFPDTKVT YMDRKELPGD RKTKTEIVVE SKLTEEVDIS 701 750 ENSP00000336775/1-1564 DEAGLDYLLS KDIKEVGLKG KSAEQMIGDI INLGLKGREG RAKVVNVEIV ENSBTAP00000015606/1-1547 DEAGLDYLLS KDAKEVELKG KSAERLIGDV IRLGLKGKEG RAKVVNVEII ENSTTRP00000005640/1-1349 DEAGLDYLLS KDAKEVKLKG KSAEHLIGDI ISLGLKGREG RAKVVNVEII bmy_06122T0/1-1234 DEAGLDYLLS KDAKEVKLKG KSAEHLIGDI INLGLKGREG RAKVVNVEII BACU019089/1-1288 DEAGLDYLLS KDAKEVKLKG KSAEHLIGDI IGLGLKGREG RAKVVNVEII 751 800 ENSP00000336775/1-1564 EEPVSYVSGE KPEEFSVPFK VEEVEDVSPG PWGLV--KEE EGYGESDVTF ENSBTAP00000015606/1-1547 EEPMSYVSSE KEDEFSTPFE VEEIDDVSPS SRGLVEEREE AVYGESDVTC ENSTTRP00000005640/1-1349 EEPVSYVSGE KADEFSTPFE VEEVDDVSSG SKGLV--VEE EVYGETDITC bmy_06122T0/1-1234 EEPVSYVSGE KADEFSTPFE VEEVDDVSSG SKGLV--VEE EVYRETDTTC BACU019089/1-1288 EEPLSYVSGE KVDEFSTPFE VEEVDDVSSG SKGLV--VEE EVYRETDTMC 801 850 ENSP00000336775/1-1564 SVNQHRRTKQ PQENTTHVEE VTEAGDSEGE QSYFVSTPDE HPGGHDRDDG ENSBTAP00000015606/1-1547 SGDAGQEARR PQESVTHVEE VTEAGDLEGE QSYFVSTPDE HPGAPEREEG ENSTTRP00000005640/1-1349 SGNEGQKTRQ PQENITHFEE VTEAGDLEGE QSYLVSTPDE YPGGHERDEG bmy_06122T0/1-1234 SANEGQKTRQ PQENITHFEE VTEAGDLEGE QSYLVSTPDE YPGGHERVEG BACU019089/1-1288 SGNEGQKTRQ PQENITHFEE VTEAGDLEGE QSYLVSTPDE YPGGHERVEG 851 900 ENSP00000336775/1-1564 SVYGQIHIEE ESTIRYSWQD EIVQGTRRRT QKDGAVGEKV VKPLDVPAPS ENSBTAP00000015606/1-1547 SVYGQIHIEE ESTIRYSWQD EIVPGSRRRV RRDDVPGEKV VKPVDVPEVP ENSTTRP00000005640/1-1349 PVYGQIHIEE ESTIRYSWQD EIVPGSRRRM ERDDALGEKV VKPLDVPEAS bmy_06122T0/1-1234 SVYGQIHIEE ESTIRYSWQD EIVPGSRRRM EGDDALGEKV VKPLDVPEAS BACU019089/1-1288 SVYGQIHIEE ESTIRYSWQD EIVPGSRRRM EGDDALGEKV VKPLDVPEAS 901 950 ENSP00000336775/1-1564 LEGDLGSTHW KEQARSGEFH AEPTVIEKEI KIPHEFHTSM KGISSKEPRQ ENSBTAP00000015606/1-1547 LEGDTASAPW KEQTRSGEFH AKPIVIEKEI KIPHEFHTSI KE-GSKEPRH ENSTTRP00000005640/1-1349 LEGDMGSTHW KGQARSGEFH AEPIVIEKEI KIPHEFHTSI KG-GFKEPRH bmy_06122T0/1-1234 LEGDMGSTHW KGQARSGEFH AEPIVIEKEI KIPHELHTSI KG-GFKEPRH BACU019089/1-1288 LEGDMGSTHW KGQARSGEFH AEPIVIEKEI KIPHEFHTSI KG-GFKEPRH 951 1000 ENSP00000336775/1-1564 QLVEVIGQLE ETLPERMREE LSALTREGQG GPGSVSVDVK KVQGAGGSSV ENSBTAP00000015606/1-1547 QLVEVIEQLE ENLPERMKEE LSALTREGQG GPAGVSFDVK KVQSAGSGAV ENSTTRP00000005640/1-1349 QLVEVIEQLE ESLPERMKEE LSTFTREGQG GPRGGSVDVK KVQTAGGGAV bmy_06122T0/1-1234 QLVEVIEQLE ESLPEHMKEE LSAFTGEGQG GPGGVSVDVK KVQTAGGGAV BACU019089/1-1288 QLVEVIEQLE ESLPERMKEE LSAFTGEGQG GPGGVSVDVK KVQTVGGGAV 1001 1050 ENSP00000336775/1-1564 TLVAEVNVSQ TVDADRLDLE ELSKDEASEM EKAVESVVRE SLSRQRSPAP ENSBTAP00000015606/1-1547 TLVAEVNLSQ TVDADQLDLE ELSKDEAGEI EKAVESVVRD SLARRRSPGP ENSTTRP00000005640/1-1349 TLVAEVNLSQ TVDADQLDLE ELSRDEAGEI EKAVESVVRD GLARWHSPAP bmy_06122T0/1-1234 TLVAEVNLSQ TVDADQLDLE ELSRDEAGEI EKAVESVVRD GLARRHSPAP BACU019089/1-1288 TLVAEVNLSQ TVDADQLDLE ELSRDEAGEI EKAVESVVRD GLARRHSPAP 1051 1100 ENSP00000336775/1-1564 GSPDEEGGAE APAAGIRFRR WATRELYIPS GESEVAGGAS HSSGQRTPQG ENSBTAP00000015606/1-1547 GSPEAE---- ---AGGGFRR WATQELYSSS AGEADAGLAS P-------PG ENSTTRP00000005640/1-1349 GSPDGEARME APAASRGFKR WATQELYSPS GEEADAGWAS PHTELVTSQG bmy_06122T0/1-1234 GSPDGEARVE APAASHGFKR WATQELYSPS GEEADAGRAS PRTELVTSQG BACU019089/1-1288 GSPDGEARAE APAASHGFKR WATQELYSPS GEEADAGRAS PRTELVTSQG 1101 1150 ENSP00000336775/1-1564 PVSATVEVSS PTGFAQSQVL EDVSQAARHI KLGPSEVWRT ERMSYEGPTA ENSBTAP00000015606/1-1547 PVSATVEVTS PTGFVHAHVL EDVSQSGGRV QIASPGMWRT EQVSAEGRAA ENSTTRP00000005640/1-1349 PVLATVEVTS PTGFAQSHVL EDVSQSVRHV QIVPPGTWRA EQVSPEGSAA bmy_06122T0/1-1234 PMSATVEVTS PRGFAQSHVL EDVSQSVRHV QREPPGTWRT EQVSPKGPAA BACU019089/1-1288 PMSATVEVTS PRGFAQSHVL EDVSQSVRHV QIEPPGTWRT EQVSPEGPAA 1151 1200 ENSP00000336775/1-1564 EVVEVSAGGD LSQAASPTGA SRSVRHVTLG PGQSPLSREV IFLGPAPACP ENSBTAP00000015606/1-1547 QAVEVSAEGQ ASWAEGSAGT SRSARLITLG ARQSPVSTEV IFPGPDAACP ENSTTRP00000005640/1-1349 QVVEVSGEGD LSWAASSAEA SLSARHLTLG PDQSQLSKEV FFPGPDSPCL bmy_06122T0/1-1234 QVVEVSGEGD LSWAASSAGA SLSARHLTLG PDQSQLSKEV FFPGPDPPCP BACU019089/1-1288 QVVEVSGEGD LSWAASSAGA SLSARHLMLG PDQSQLSKEV FFPGPDPPCP 1201 1250 ENSP00000336775/1-1564 EAWGSPEPGP AESSADMDGS GRHSTFGCRQ FHAEKEIIFQ GPISAAGKVG ENSBTAP00000015606/1-1547 EAGGTEEPGP AELPTEPPRF GRHSPFGSQQ FYAQREVIFQ APVSGVGKAG ENSTTRP00000005640/1-1349 GAGDSEEPGL AEVSTDPDRS GRHSPFGSQQ FHSKREITFQ APASEAGKVG bmy_06122T0/1-1234 GAGDSEEPGP AELSTDPDRS GRHSPLGSQQ FHSKREIIFQ APASEAGKVG BACU019089/1-1288 GAGDSEEPGP AELSTDPDRS GRHRPFGSQQ FHSKREIIFQ APASEAGKVG 1251 1300 ENSP00000336775/1-1564 DYFATEESVG TQTSVRQLQL GPKEGFSGQI QFTAPLSDKV ELGVIGDSVH ENSBTAP00000015606/1-1547 DSSQAEESAG TQTSVKHLQL GTREGLTEQT QLTAPLSGAV ELGVREASVL ENSTTRP00000005640/1-1349 DYFS-EESVG TQTSVKHLQL GLREGFSEQI QLTAPLSDRM ELGVREASGH bmy_06122T0/1-1234 DYFSTEESAG TQTSVKHLQL GPKEGFSEQI QLTAPLSDRM ELGVREASVH BACU019089/1-1288 DYFSTEESAG TQTSVKHLQL GPMEGFSEQI QLTAPLADRM ELGVREASVR 1301 1350 ENSP00000336775/1-1564 MEGLPGSSTS IRHISIGPQR HQTTQQIVYH GLVPQLGESG DSESTVHGEG ENSBTAP00000015606/1-1547 MEAWSGDGTS IRHVTIGPQR HQATEPI--- --VPPPLEFS DSESSTHREG ENSTTRP00000005640/1-1349 TEVWSGNGTS IRHIKTVPQR HQGTEQM--- --VPSPSKFS DSESKAHRED bmy_06122T0/1-1234 TEAWSGNGTS IRHIKTVPQR HXGTEQI--- --VPPPSEFS DSESKAHREG BACU019089/1-1288 TEVRSGNGTC IRHIKTVPQR HQGTEQV--- --VPPPSEFS DSESKAHREG 1351 1400 ENSP00000336775/1-1564 SADVHQATHS HTSGRQTVMT EKSTFQSVVS ESPQEDSAED TSGAEMTSGV ENSBTAP00000015606/1-1547 SADETLATSS YTVGRNILVT EKSTFQRAVS ESPQEASAED MSGNEVTSGV ENSTTRP00000005640/1-1349 SADVTQATHS YAVGRKILMT EKSTFQRAVF ESPQEASSGD TSGAEATSDV bmy_06122T0/1-1234 SADVTQATSS YTVGRKILMT EKSTFQRAVS ESPQEASSGD TSGAEATSGV BACU019089/1-1288 SAGVTQATRS YTVGRKILMT EKSTSQRAVS ESPQEASSGD TSGAEATSGV 1401 1450 ENSP00000336775/1-1564 SRSFRHIRLG PTETETSEHI AIRGPVSRTF VLAGSADSPE LGKLADSSRT ENSBTAP00000015606/1-1547 SRSFRHIQLG PAEAKTSEHI VFHGPISKTF ALAGSVDSPE VSEVADSGRT ENSTTRP00000005640/1-1349 SRSFRHIQLG PAETNTSAHV VFHGPISKTF ALAGSVDSPE VGRVADSGRT bmy_06122T0/1-1234 SRSFRHIQLG PAETNASAHV VFHGPISKTF ALAGSVDSPE VGEVADSGRT BACU019089/1-1288 SRSFRHIQLG PAETNTSAHV VFHGPISKTF ALAGSVDSPE VGEVADSGRT 1451 1500 ENSP00000336775/1-1564 LRHIAPGPKE TSFTFQMDVS NVEAIR---- ------SRTQ EAGALGVSDR ENSBTAP00000015606/1-1547 LRHVALGPKE TSFTFQMDVS NVEATSRWTQ EARVLFPAGT EAEAPSVSEP ENSTTRP00000005640/1-1349 LRH------- AKTSLLQDVS -VETTPT--- ------QRPQ EAEAHSVSDR bmy_06122T0/1-1234 LRHVALGPKE TSFTFQMDVS NVETTPRWTQ EATVLFPAGT EAEAHSVSDR BACU019089/1-1288 LRHVALGPKE TSFTFQMDVS NVETTPRWTR EATVLFPAGT EAEAHSVSDR 1501 1550 ENSP00000336775/1-1564 GSWRDADSRN DQAVGVSFKA SAGEGDQAHR EQGKEQAMFD KKVQLQRMVD ENSBTAP00000015606/1-1547 GAWRDASSRN DLAAGVSFQG SAGDRHQAPG ERGKEQAEFD KTVQLQRMVD ENSTTRP00000005640/1-1349 DAWRDASSRN DLAAGVSFQG SAGDKHQAPG EKGKEQAEFD KMVQLQRMVD bmy_06122T0/1-1234 DAWRDASSRN DLAAGVSFQG SAGDRHQAPG EKGKEQAEFD KMVQLQRMVD BACU019089/1-1288 DAWRDASSRN DLAAGVSFQG SAGDRHQAPG EKGKEQAEFD KMVQLQRMVD 1551 1600 ENSP00000336775/1-1564 QRSVISDEKK VALLYLDNEE EENDGHWF ENSBTAP00000015606/1-1547 QRSVISDEKK VALLYLDSQE EENEGHWF ENSTTRP00000005640/1-1349 QRSVISDEKK VALLYLDNQE EENEGHWF bmy_06122T0/1-1234 QRSVISDEKK VALLYLDNQE EENEGHWF BACU019089/1-1288 QRSVISDEKK VALLYLDNQE EENEGHWF