KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:28 2014 Check: 00 .. Name: ENSP00000333799/1-464 Len: 623 Check: 7818 Weight: 1.00 Name: ENSBTAP00000015608/1-464 Len: 623 Check: 7100 Weight: 1.00 Name: ENSTTRP00000000870/1-460 Len: 623 Check: 4416 Weight: 1.00 Name: bmy_00390T0/1-472 Len: 623 Check: 3763 Weight: 1.00 Name: BACU012004/1-454 Len: 623 Check: 9614 Weight: 1.00 // 1 50 ENSP00000333799/1-464 MALVALVAGA RLGRRLSGPG LGRGHWTAAR RSRSRREAAE AEAEVPVVQY ENSBTAP00000015608/1-464 MAVVTLAAVA RLGRRLSGLG PGRGHWTAAG RSRSRREAAE AEADAPVFQY ENSTTRP00000000870/1-460 ---MALVAGA RLGRRLSGPG PWRGHWTAAG RSRSRRETAE AEADAPVFQY bmy_00390T0/1-472 ---------- ---------- ---------- ---------- ---------- BACU012004/1-454 ---MALAAGI RLGRRLSGPG LWRGHWTAAG RPRSRRETAE AEADAPVFQI 51 100 ENSP00000333799/1-464 --VGERAARA DRVFVWGFSF SGALGVPSFV VPSSGPGPRA GARPRRRIQP ENSBTAP00000015608/1-464 --VGERATRA DRIFVWGFSF SGALGVPTFV LPGSGPQPRA GSRPRRRIQP ENSTTRP00000000870/1-460 --VGERATRA DRIFVWGFSF SGALGVPTFV LPGSGPQPRA GSRPRRRIQA bmy_00390T0/1-472 ---------- ---------- ---------- ---------- ---------- BACU012004/1-454 QAVPYRLELD QKVRI----- -SAPSLPPCV LPSGLGRASR GTRPSRRVNA 101 150 ENSP00000333799/1-464 VPYRLELDQK ISSAACGYGF TLLSSKTADV TKVWGMGLNK DSQLGFHRSR ENSBTAP00000015608/1-464 VPYRLELDQK ISSAACGYGF TLLSSKTKDI TKVWGMGLNK DSQLGFHRSR ENSTTRP00000000870/1-460 VPYRLKLDQK ISSAACGYGF TLLSSKTKDV TKVWGMGLNK DSQLGFHRSR bmy_00390T0/1-472 ---------- ---------- ---------- -----MGLNK DSQLGFHRSR BACU012004/1-454 L---WEFFFQ ISSAACGYGF TLLSSKTKDV TKVWGMGLNK DSQLGFHRSR 151 200 ENSP00000333799/1-464 KDKTRGYEYV LEPSPVSLPL DRPQETRVLQ VSCGRAHSLV LTDREGVFSM ENSBTAP00000015608/1-464 KDKTRGYEYV LEPSPVPLPL DRPQETRVLQ VSCGRAHSLV LTDGEGVFSM ENSTTRP00000000870/1-460 KDKMRGYEYV LEPSPVALPL DRPQETQVLQ VSCGRAHSLV LTDSEG-FSM bmy_00390T0/1-472 KDKTRGYEYV LEPSPXPLPL DRPQETQVLQ VSCGRAHSLI LTDSEGVFSM BACU012004/1-454 KDKTRGYEYV LEPSPVPLPL DRPQETQVLQ VSCGRAHSLV LTDSEGVFSM 201 250 ENSP00000333799/1-464 GNNSYGQCGR KVVENEIYSE SHRVHRMQDF DGQVVQVACG QDHSLFLTDK ENSBTAP00000015608/1-464 GNNSYGQCGR KVVENEIYSE SHRVHRMQDF DGQVVQVACG QDHSLFLTDQ ENSTTRP00000000870/1-460 GNNSYGQCGR KVVENEVYSE SHKVHRMQDF DGQVVQVACG QDHSLFLTDK bmy_00390T0/1-472 GNNSYGQCGR KVVENEVYSE SHKVHRMQDF DGQVVQVACG QDHSLFLTDK BACU012004/1-454 GNNSYGQCGR KVVENEVYSE SHKVHRMQDF DGQVVQVACG QDHSLFLTDK 251 300 ENSP00000333799/1-464 GEVYSCGWGA DGQTGLGHYN ITSSPTKLGG DLAGVNVIQV ATYGDCCLAV ENSBTAP00000015608/1-464 GEVYSCGWGA DGQTGLGHYN ITSTPTKLGG DLAGVNVVQV ATYGDCCLAV ENSTTRP00000000870/1-460 GEVYSCGWGA DGQTGLGHYN ITSAPTKLAG DLAGVNVVQV ATYGDCCLAV bmy_00390T0/1-472 GEVYSCGWGA DGQT------ ---------- DLAGVNVVQV ATYGDCCLAV BACU012004/1-454 GEVYSCGWGA DGQTGLGHYD ITSAPTKLAG DLAGVNVVQV ATYGDCCLAV 301 350 ENSP00000333799/1-464 SADGGLFGWG NSEYLQLASV TDSTQVNVPR CLHFSGVGKV RQAACGGTGC ENSBTAP00000015608/1-464 SADGGLFGWG NSEYLQLASV TDSTQVNVPR CLPFSGVGQV KQAACGGTGC ENSTTRP00000000870/1-460 SVDGSLFGWG NSEYLQLASV TDSTQVNVPR CLPFSGVGQV KQAASGGTGC bmy_00390T0/1-472 SVDGSLFGWG NSEYLQLASV TDSTQVNVPR CLPFSGVGRV KQAASGGTGC BACU012004/1-454 SVDGSLFGWG NSEYLQLASV TDSTQVNVPR CLPFSGVGRV KQAASGGTGC 351 400 ENSP00000333799/1-464 AVLNGEGHVF VWGYGILGKG PNLVESAVPE MIPPTLFGLT EFNPEIQVSR ENSBTAP00000015608/1-464 AVLNGEGHVF VWGYGILGKG PNLLETALPE MIPPTLFGLS EFNPGVQVSR ENSTTRP00000000870/1-460 AVLNGEGHVF VWGYGILGKG PNLMETALPE MIPPTLFGLT EFNPGVQVSR bmy_00390T0/1-472 AVLNGEGHVF VWGYGILGKG PNLMETALPE MIPPTLFGLT EFNPGVQVSR BACU012004/1-454 AVLNGEGHVF VWGYGILGKG PNLMETALPE MIPPTLFGLT EFNPGVQVSR 401 450 ENSP00000333799/1-464 IRCGLSHFAA LTNKGELFVW GKNIRGCLGI GRLEDQYFPW RVTMPGEPVD ENSBTAP00000015608/1-464 IRCGLSHFAA LTNRGELFVW GKNIRGCLGI GRLEDQYFPW RVTMPGEPMD ENSTTRP00000000870/1-460 ICCGLSHFAA LTNRGELFVW GKNIRGCLGI GRLEDQYFPW RVTMPGEPVD bmy_00390T0/1-472 IRCGLNHFAA LTNRGELFVW GKNVRGCLGI GRLEDQYFPW RVTMPGEPVD BACU012004/1-454 IRCGLNHFAA LTNRGELFVW GKNVRGCLGI GRLEDQYFPW RVTMPGEPVD 451 500 ENSP00000333799/1-464 VACGVDHMVT LAKSFI---- ---------- ---------- ---------- ENSBTAP00000015608/1-464 VACGVDHMVT LARSFI---- ---------- ---------- ---------- ENSTTRP00000000870/1-460 VACGVDHMVT LARSFI---- ---------- ---------- ---------- bmy_00390T0/1-472 VACGVDHMVT LARSFALASG PPGLRSRGSR WGSGWGPRGS GPSVWCAALP BACU012004/1-454 VACGVDHMVT LARSFI---- ---------- ---------- ---------- 501 550 ENSP00000333799/1-464 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015608/1-464 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000870/1-460 ---------- ---------- ---------- ---------- ---------- bmy_00390T0/1-472 CGPERCDWRC RDGVPPLPRV RRAALSTDAA VIGRAPGVCG PGRARTSAHL BACU012004/1-454 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000333799/1-464 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015608/1-464 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000870/1-460 ---------- ---------- ---------- ---------- ---------- bmy_00390T0/1-472 GSFWGTHDGF WCHVWSLESL ARSAVSACCW DTSRNPLHWG SPWKCQWAPA BACU012004/1-454 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000333799/1-464 ---------- ---------- --- ENSBTAP00000015608/1-464 ---------- ---------- --- ENSTTRP00000000870/1-460 ---------- ---------- --- bmy_00390T0/1-472 QDPYFLLFRF EELERPFYFN LIV BACU012004/1-454 ---------- ---------- ---