KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:56:33 2014 Check: 00 .. Name: ENSBTAP00000015635/1-1206 Len: 1221 Check: 8478 Weight: 1.00 Name: ENSTTRP00000000882/1-1182 Len: 1221 Check: 897 Weight: 1.00 Name: bmy_21087T0/1-1149 Len: 1221 Check: 4461 Weight: 1.00 Name: BACU009483/1-1066 Len: 1221 Check: 2914 Weight: 1.00 // 1 50 ENSBTAP00000015635/1-1206 MKTAQFLQRM WVQAVKKLGR LKGHVSPSAS SPFPLFFPNL SLWEIGRGSL ENSTTRP00000000882/1-1182 ---------- --------MP VRGDRGFPPR REMS------ --------GW bmy_21087T0/1-1149 ---------- --------MP VRGDRGFPPR REMS------ --------GW BACU009483/1-1066 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000015635/1-1206 LTAPGMEELI WEQYTVTLQK DSKRGFGIAV SGGRDNPHFE NGETSIVISD ENSTTRP00000000882/1-1182 LQAPGMEELI WEQYTVTLQK DSKRGFGIAV SGGRDNPHFE NGETSIVISD bmy_21087T0/1-1149 LRAPGMEELI WEQYTVTLQK DSKRGFGIAV SGGRDNPHFE NGETSIVISD BACU009483/1-1066 -----MEELI WEQYTVTLQK DSKRGFGIAV SGGRDNPHFE NGETSIVISD 101 150 ENSBTAP00000015635/1-1206 VLPGGPADGL LQENDRVVMV NGTPMEDVLH SFAVQQLRKS GKIAAIVVKR ENSTTRP00000000882/1-1182 VLPGGPADGL LQENDRVVMV NGTPMEGVLH SFAVQQLRKS GKIAAIVVKR bmy_21087T0/1-1149 VLPGGPADGL LQENDRVVMV NGTPMEDVLH SFAVQQLRKS GKIAAIVVKR BACU009483/1-1066 VLPGGPADGL LQENDRVVMV NGTPMEDVLH SFAVQQLRKS GKIAAIV--- 151 200 ENSBTAP00000015635/1-1206 PRKVQLAPLQ DSPPVHEDDR AFEVMDEFDG RSARSGYSER SRPSSRGGRS ENSTTRP00000000882/1-1182 PRKVQLAPPQ GSPPVHEHDR AFELMDEFDG RSARSGYSER SRPSSRGECS bmy_21087T0/1-1149 PRKVQLAPPQ GSPPVHKHDR AFELPDEFDG RSARSGYSER SRPSSRGGRR BACU009483/1-1066 ---------- ---------- ---------- ---RSG---- ---------- 201 250 ENSBTAP00000015635/1-1206 RSWEESPERG RPHDRVRSRD ----RGRSLE RGLDHDDDYG --RARERSRG ENSTTRP00000000882/1-1182 RSWEDSLERG RPHDRARSRE RDRSRGRSLE RGLDHDDDYY YRRARERSRG bmy_21087T0/1-1149 RSWEDSPERG RPHDRARSRE RDRSRGRSLE RGLDHDDNYY V-RARERSRG BACU009483/1-1066 ---------- --------RE RDGSRGRSLE RGLDHDDSYY V-RARERSRG 251 300 ENSBTAP00000015635/1-1206 RSLERGLDQ- -DDYRRARES SRGRSIDPVY DRAYTPEGEY GHRAQPDARY ENSTTRP00000000882/1-1182 RSLERGLDHD DDDYRRARER SRGRSIDPTY DRAYSPEREY GRRAQPDARY bmy_21087T0/1-1149 RSLERGLDHD DDDYRRALQS SCGRSVDPTY DHAYSPEAEY GRRAQPDARY BACU009483/1-1066 RSLERGLDHD DDDYRRARQS SRGRSIDPTY DRAYSPEGEY GRRAQPDARY 301 350 ENSBTAP00000015635/1-1206 GASQSRSREH LHSRSPSPEP RGRPDSDKPI G-------VL MMKSKANEEY ENSTTRP00000000882/1-1182 GTSWSRSREH LHSRSPSPEP RGQLDSDRPI G-------IL LMKSKANEEY bmy_21087T0/1-1149 GASQSRSREH LHSRSPSPEP QGRLDSDRPI GFSEHVGEIC VYLCVCLLEY BACU009483/1-1066 GASQSHSREH LHSRSPSPEP QGRLDSDRPI G-------VL LMKSKANEEY 351 400 ENSBTAP00000015635/1-1206 GLRLGSQIFI KEMTRTGLAT KDGNLHEGDI ILKINGTVTE NMSLTDARKL ENSTTRP00000000882/1-1182 GLRLGSQIFI KEMTGTGLAS KDGNLHEGDI ILKINGTVTE NMSLTDARKL bmy_21087T0/1-1149 GLRLGSQIFI KEMTGTGLAS KDGNLHEGDI ILKINGTVTE NMSLTDARKL BACU009483/1-1066 GLRLGSQIFI KEMTGTGLAS KDGNLHEGDI ILKINGTVTE NMSLTDARKL 401 450 ENSBTAP00000015635/1-1206 IEKSRGKLQL VVLRDSKQTL INIPSLNDSD SEIEDISEIE SNRSFSPEER ENSTTRP00000000882/1-1182 IEKSRGKLQL VVLRDSKQTL INIPSLNDSD SEIEDISEIE SNQSFSPEDR bmy_21087T0/1-1149 IEKSRGKLQL VVLRDSKQTL INIPSLNDSD SEIEDISEVE SNRSFSPEER BACU009483/1-1066 IEKSRGKLQL VVLRDSKQTL INIPSLNDSD SEIEDISEIE SNRSFSPEER 451 500 ENSBTAP00000015635/1-1206 RQQYSDYDYH SSNEKLKERP NSREDMQSRW SRMGATPTPF KSTGDMAAAG ENSTTRP00000000882/1-1182 RQQYSDYDYH SSNEKLKERP NSREDTHSRW SRMGATPTPF KSTGDIAAAV bmy_21087T0/1-1149 QQQYSDYDYH SSNEKLKERP --KEDTHSRW SRMGTTPTPF KSTGDIAAAV BACU009483/1-1066 RQQYSDYDYH SSNEKLKERP NSREDTHSRW SRMGATPAPF KSTGDIAAAV 501 550 ENSBTAP00000015635/1-1206 SVEPSKEPKY QEEAPVPPPK PAPRAVLRPS PEDLAIYGPN TKMVRFKKGD ENSTTRP00000000882/1-1182 SAEPSKEPTY QEEAPVPPPK PAPRTVLRPS PEDLAIYGPN TKMVRFKKGD bmy_21087T0/1-1149 STEPSKEPTY QGEAPVPPPK PTPRTVLRPS PEDLATYGPS TKMVRFKKGD BACU009483/1-1066 STEPSKEPAY QEEAPAPPPK PAPRTVLRPS PEDLAIYGPS TKMVRFKKGD 551 600 ENSBTAP00000015635/1-1206 SVGLRLAGGN DVGIFVAGIQ EGTSAEQEGL QEGDQILKVN TQDFRGLVRE ENSTTRP00000000882/1-1182 SVGLRLAGGN DVGIFVAGIQ EGTSAEQEGL QEGDQILKVN TQDFRGLVRE bmy_21087T0/1-1149 SVGLRLAGGN DVGIFVAGIQ EGTSAEQEGL QEGDQILKVN TQDFRGLVRE BACU009483/1-1066 NVGLRLAGGN DVGIFVAGIQ EGTSAEQEGL QEGDQILKVN TQDFRGLVRE 601 650 ENSBTAP00000015635/1-1206 DAVLYLLEIP KGETVTILAQ SRADVYRDIL ACGRGDSFFI RSHFECEKET ENSTTRP00000000882/1-1182 DAVLYLLEIP KGEMVTILAQ SRADVYRDIL ACGRGDSFFI RSHFECEKET bmy_21087T0/1-1149 DAVLYLLEIP KGEMVTILAQ SRADVYRDIL ACGRGDSFFI RSHFECEKET BACU009483/1-1066 DAVLYLLEIP KGEMVTILAQ SRADVYRDIL ACGRGDSFFI RSHFECEKET 651 700 ENSBTAP00000015635/1-1206 PQSLAFTRGE VFRVVDTLYD GKLGHWLAVR IGNELEKGLI PNKSRAEQMA ENSTTRP00000000882/1-1182 PQSLAFTRGE VFRVVDTLYD GKLGHWLAVR IGNELEKGLI PNKSRAEQMA bmy_21087T0/1-1149 PQSLAFTRGE VFRVVDTLYD GKLGHWLAVR IGNELEKGLI PNKSRAEQMA BACU009483/1-1066 PQSLAFTRGE VFRVVDTLYD GKLGHWLAVR IGNELEKGLI PNKSRAEQMA 701 750 ENSBTAP00000015635/1-1206 SVQNAQRDTT GDRADFWRMR GQRSGVKKNL RKSREDLTAA VTVSTKFPAY ENSTTRP00000000882/1-1182 SVQTAQRDSS GDRADFWRMR GQRSGVKKNL RKSREDLTAV VSVSTKFPAY bmy_21087T0/1-1149 SVQTAQRDST GDRADFWRMR GQRSGLKKNL RKSREDLTAA VSVSTKFPAY BACU009483/1-1066 SVQTAQRDST GDRADFWRMR GQRSGIKKNL RKSREDLTAA VSVSTKFPAY 751 800 ENSBTAP00000015635/1-1206 ERVLLREAGF KRPVVLFGPI ADIALEKLAN DLPDLFQTAK TEPRDAGSEK ENSTTRP00000000882/1-1182 ERVLLREAGF KRPVVLFGPI ADIALEKLAN ELPDLFQTAK TEPRDAGSEK bmy_21087T0/1-1149 ERVLLRE--- ---------- ADIALETLAN ELPDLFQTAS ---------- BACU009483/1-1066 ERVLLREAGF KRPVVLFGPI ADIALETLAN ELPDLFQTAS ---------- 801 850 ENSBTAP00000015635/1-1206 STGVVRLNTV RQIIEQDKHA LLDVTPKAVD LLNYTQWFPI VIFFNPDSRQ ENSTTRP00000000882/1-1182 SSGVVRLNTV RQIIEQEKHA LLDVTPKAVD LLNYTQWFPI VIFFNPDSRQ bmy_21087T0/1-1149 ---------- ----KSEKHA LLDVTPKAVD LLNYTQWFPI VIFFNPDSRQ BACU009483/1-1066 ---------- ----KSEKHA LLDVTPKAVD LLNYTQWFPI VIFFNPDSRQ 851 900 ENSBTAP00000015635/1-1206 GVKTMRQRLN PSSNKSSRKL FDQANKLKKT CAHLFTATIN LNSANDSWFG ENSTTRP00000000882/1-1182 GVKTMRQRLN PSSNKSSRKL FDQANKLKKT CAHLFTATIN LNSANDSWFG bmy_21087T0/1-1149 GVKTMRQRLN PSSNKSSRKL FDQANKLKKT CAHLFTATIN LNSASDSWFG BACU009483/1-1066 GVKTMRQRLN PSSNKSSRKL FDQANKLKKT CAHLFTATIN LNSANNSWFG 901 950 ENSBTAP00000015635/1-1206 SLKDTIQHQQ GEAVWVSEGK MEGMDDDPED RMSYLTAMGA DYLSCDSRLI ENSTTRP00000000882/1-1182 SLKDTIQHQQ GEAVWVSEGK MEGMDDDPED RMSYLTAMGA DYLSCDSRLI bmy_21087T0/1-1149 SLKDTIQHQQ GEAVWVSEGK MEGMDDDPED RMSYLTAMGV DYLSCDSRLI BACU009483/1-1066 SLKDTIQHQQ GEAVWVSEGK MEGMDDDPED RMSYLTAMGA DYLSCDSRLI 951 1000 ENSBTAP00000015635/1-1206 SDFEDTDGEG GAYTDNELDE PAEEPLVSSI TRSSEPVQHE ESIRKPSPEP ENSTTRP00000000882/1-1182 SDFEDTDGEG GAYTDNELDE PAEEPLVSSI TRSSEPVQHE ESIRKPSPEP bmy_21087T0/1-1149 SDFEDTDGEG GAYTDNELDE PAEEPLVSAI TRSSEPVQHE ESIRKPSPEP BACU009483/1-1066 SDFEDTDGEG GAYTDNELDE PAEEPLVSAI TRSSEPVQHE ESIRKRSPEP 1001 1050 ENSBTAP00000015635/1-1206 RAQMRRAASR DQLRDNSPPP TFKPEPPKAK TQNREESFDF SRSYEYKSNP ENSTTRP00000000882/1-1182 GAQMRRAASR DQLRDNSPPP AFKPEPPQAK TQNKEESFDF SRSYEYKSNP bmy_21087T0/1-1149 RAQMRRAASR DQLRDNSPPP AFKPEPPKVK TQNKEESIDF SRSYEYKSNP BACU009483/1-1066 RAQMRRAASR DQLRDNSPPP AFKPEPPKVK TQNKEESIDF SRSYEYKSNP 1051 1100 ENSBTAP00000015635/1-1206 SAAAGNEIPG ASTKGCPPPI AAKPTFGRPV LKPSTPVPPP ESEETGEGSE ENSTTRP00000000882/1-1182 SAVAGNEIPG TSTKGCPPPI AAKPAFGRPI LKPSTPVPPP ESEEVGESSE bmy_21087T0/1-1149 SAVAGDEIPG TSTKGCPPPI AAKPTFGRPI LKPSTPVPPP ESEEVGEGSE BACU009483/1-1066 SAVAGDEIPG TSTKGCPPPI AAKPTFGRPI LKPSAPVPPP ESEEVGEGSE 1101 1150 ENSBTAP00000015635/1-1206 EQHNAPKSVL GKVKIFEKMD HKAKLQRMQE LQEAQNARIE IAQKHPDIYA ENSTTRP00000000882/1-1182 EQDSAPKSVL GKVKIFEKMD HKARLQRMQE LQEAQNARIE IAQKHPDIYA bmy_21087T0/1-1149 EQDSAPKSVL GKVQIFEKMD HKARLQRMQE LQEAQSARIE IAQKHPDIYA BACU009483/1-1066 EQDSAPKSVL GKVKIFEKMD HKARLQRMQE LQEAQNARIE IAQKHPDIYA 1151 1200 ENSBTAP00000015635/1-1206 VPIKTHKPDP GPPQYTSSRP PEPQKGPARL YQDPRGSYGS DAEEEEYRQQ ENSTTRP00000000882/1-1182 VPIKTPKPEP GPPQYTSSRP PEPQKGPARL YQDPRGGYGS DAEEEEYRQQ bmy_21087T0/1-1149 VPVKTHKPEP GPPQYTSSRS PEPQKGPARL YQDPRGSYGS DAEEEEYRQQ BACU009483/1-1066 VPIKTHKPEP GPPQYTSSRP PEPQKGPARL YQDPKGSYGS DAEEEEYRQQ 1201 1250 ENSBTAP00000015635/1-1206 LSEHSRHGYY GQPSRYRDTE L ENSTTRP00000000882/1-1182 LSEHSKRNYY GQPSRYRDTE L bmy_21087T0/1-1149 LSEHSKRSYY GQHSHYRDTE L BACU009483/1-1066 LSEHSKRSYY GQHSQYRDTE L