KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:39 2014 Check: 00 .. Name: ENSTTRP00000004659/1-1025 Len: 1503 Check: 8348 Weight: 1.00 Name: bmy_21243T0/1-921 Len: 1503 Check: 1514 Weight: 1.00 Name: ENSP00000355180/1-1028 Len: 1503 Check: 6096 Weight: 1.00 Name: BACU004347/1-1279 Len: 1503 Check: 4399 Weight: 1.00 Name: ENSBTAP00000015668/1-1027 Len: 1503 Check: 3407 Weight: 1.00 // 1 50 ENSTTRP00000004659/1-1025 ---------- ---------- ---------- ---------- ---------- bmy_21243T0/1-921 ---------- ---------- ---------- ---------- ---------- ENSP00000355180/1-1028 ---------- ---------- ---------- ---------- ---------- BACU004347/1-1279 MESKVSEGGL NVTLTIRLLM HGKEVGSIIG KKGETVKKMR EESGARINIS ENSBTAP00000015668/1-1027 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000004659/1-1025 ---------- ---------- ---------- ---------- ---------- bmy_21243T0/1-921 ---------- ---------- ---------- ---------- ---------- ENSP00000355180/1-1028 ---------- ---------- ---------- ---------- ---------- BACU004347/1-1279 EGNCPERIVT ITGPTDAIFK AFAMIAYKFE EDIINCMSNS PATSKPPVTL ENSBTAP00000015668/1-1027 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000004659/1-1025 ---------- ---------- ---------- -----MSLPR V--------- bmy_21243T0/1-921 ---------- ---------- ---------- -MWPPAWGPR V--------- ENSP00000355180/1-1028 ---------- ---------- ---------- -----MRAAR A--------- BACU004347/1-1279 RLVVPASQCG SLIGKGGSKI KEIRESTGAQ VQVAGDMLPN STERAVTISG ENSBTAP00000015668/1-1027 ---------- ---------- ---------- -----MRLPR A--------- 151 200 ENSTTRP00000004659/1-1025 ---------- ---------- ---------- ---------- ---------- bmy_21243T0/1-921 ---------- ---------- ---------- ---------- ---------- ENSP00000355180/1-1028 ---------- ---------- ---------- ---------- ---------- BACU004347/1-1279 TPDAIIQCVK QICVVMLESP PKGATIPYRP KPASTPVIFA GGQAYTIQGQ ENSBTAP00000015668/1-1027 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000004659/1-1025 ---------- ---------- ---------- ---------- ---------- bmy_21243T0/1-921 ---------- ---------- ---------- ---------- ---------- ENSP00000355180/1-1028 ---------- ---------- ---------- ---------- ---------- BACU004347/1-1279 YAIPHPDQLT KLHQLAMQQT PFPPLGQTNP AFPGLDASPP ASTHELTIPN ENSBTAP00000015668/1-1027 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000004659/1-1025 ---------- ---------- ---------- ---------- ---------- bmy_21243T0/1-921 ---------- ---------- ---------- ---------- ---------- ENSP00000355180/1-1028 ---------- ---------- ---------- ---------- ---------- BACU004347/1-1279 DLIGCIIGRQ GTKINEIRQM SGAQIKIANA TEGSSERQIT ITGTPANISL ENSBTAP00000015668/1-1027 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000004659/1-1025 ---------- --------LL ALLLQ----- ---------- ---------- bmy_21243T0/1-921 ---------- --------LG PL-------- ---------- ---------- ENSP00000355180/1-1028 ---------- --------LL PLLLQ----- ---------- ---------- BACU004347/1-1279 AQYLINASFL LGEDRGCLVL PVMPQPGRPH KFYLVLLVMR VSVPVALGCG ENSBTAP00000015668/1-1027 ---------- --------LL PLLLQ----- ---------- ---------- 351 400 ENSTTRP00000004659/1-1025 ---------- ---------- ---------- ---------- ---------- bmy_21243T0/1-921 ---------- ---------- ---------- ---------- ---------- ENSP00000355180/1-1028 ---------- ---------- ---------- ---------- ---------- BACU004347/1-1279 QMPKPGCCPC TEDKRNSADK VSPEPLGSWA PAVGSHGSGF HTTDSDFISK ENSBTAP00000015668/1-1027 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000004659/1-1025 ---------- ---------- -ACWATAQDD VAASRAIAFQ D-----CPVD bmy_21243T0/1-921 ---------- ---------- ----GKPSPG PAGP-SLSGR DGTGRLSTCD ENSP00000355180/1-1028 ---------- ---------- -ACWTAAQDE PETPRAVAFQ D-----CPVD BACU004347/1-1279 TCKNVSAAAP AAKTAQTWRD HACWATAQDD AAVSRAIAFQ D-----CPVD ENSBTAP00000015668/1-1027 ---------- ---------- -ACWASAQDD PVASRAIAFQ D-----CPVD 451 500 ENSTTRP00000004659/1-1025 LFFVLDTSES VALRLKPYGA LVDKVKAFTK RFIDNLNDRY YRCDRNLVWN bmy_21243T0/1-921 VVAVLPSDG- ---HSRGAGL GLGRAAHLRG ------ARRY YRCDRNLVWN ENSP00000355180/1-1028 LFFVLDTSES VALRLKPYGA LVDKVKSFTK RFIDNLRDRY YRCDRNLVWN BACU004347/1-1279 LFFVLDTSES VALRLKPYGA LVDKVKAFTK RFIDNLKDRY YRCDRNLVWN ENSBTAP00000015668/1-1027 LFFVLDTSES VALRLKPYGA LVDKVKSFTK RFIDNLNDRY YRCDRNLVWN 501 550 ENSTTRP00000004659/1-1025 AGALHYSDEV EIIRGLTRMP GGRDALKSSV DAVKYFGKGT YTDCAIKKGL bmy_21243T0/1-921 AGALHYSDEV EIIRGLTRMP SGRDVLKSSV DAVKYFGKGT YTDCAIKKGL ENSP00000355180/1-1028 AGALHYSDEV EIIQGLTRMP GGRDALKSSV DAVKYFGKGT YTDCAIKKGL BACU004347/1-1279 AGALHYSDEV EIIRGLTRMP SGRDVLKSSV DAVKYFGKGT YTDCAIKKGL ENSBTAP00000015668/1-1027 AGALHYSDEV EIIRGLTRMP SGRDELKSSV DAVKYFGKGT YTDCAIKKGL 551 600 ENSTTRP00000004659/1-1025 EELLVGGSHL KENKYLIVVT DGHPLEGYKE PCGGLEDAVN EAKHLGVRVF bmy_21243T0/1-921 EELLVGGSHL KENKYLIVVT DGHPLEGYKE PCGGLEDAVN EAKHLGIKVF ENSP00000355180/1-1028 EQLLVGGSHL KENKYLIVVT DGHPLEGYKE PCGGLEDAVN EAKHLGVKVF BACU004347/1-1279 EELLVGGSHL KENKYLIVVT DGHPLEGYKE PCGGLEDAVN EAKHLGIKVF ENSBTAP00000015668/1-1027 EELLVGGSHL KENKYLVVVT DGHPLEGYKE PCGGLEDAVN EAKHLGIKVF 601 650 ENSTTRP00000004659/1-1025 SVAITPDHLE PRLSIIATDH TYRRNFTAAD WGQSRDAEAV ISQTIDTITD bmy_21243T0/1-921 SVAITPDHLE PRLSIIATDH TYRRNFTAAD WGQSRDAEEV ISQTIDTITD ENSP00000355180/1-1028 SVAITPDHLE PRLSIIATDH TYRRNFTAAD WGQSRDAEEA ISQTIDTIVD BACU004347/1-1279 SVAITPDHLE PRLSIIATDH TYRRNFTAAD WGQSRDAEEV ISQTIDTITD ENSBTAP00000015668/1-1027 SVAITPDHLE PRLSIIATDH TYRRNFTAAD WGQSRDAEEV ISQTIDTITD 651 700 ENSTTRP00000004659/1-1025 MIKNNVEQVC CSFECQPARG PPGLRGDPGY EGERGKPGLP GEKGDAGDPG bmy_21243T0/1-921 MIKNNVEQVC CSFECQPARG PPGLRGDPGY EGERGKPGLP GEKGDTGDPG ENSP00000355180/1-1028 MIKNNVEQVC CSFECQPARG PPGLRGDPGF EGERGKPGLP GEKGEAGDPG BACU004347/1-1279 MIKNNVEQV- ---------- ---------- -GERGKPGLP GEKGDAGDPG ENSBTAP00000015668/1-1027 MIKNNVEQVC CSFECQPARG PPGPRGDPGY EGERGKPGLP GEKGEAGDPG 701 750 ENSTTRP00000004659/1-1025 RPGDLGPVGY QGMKGEKGSR GEKGSRGPKG YKGEKGKRGV DGVDGMKGET bmy_21243T0/1-921 RPGDLGPVGY QGMKGEKGSR GEKGSRGPKG YKGEKGKRGV DGVDGMKGET ENSP00000355180/1-1028 RPGDLGPVGY QGMKGEKGSR GEKGSRGPKG YKGEKGKRGI DGVDGVKGEM BACU004347/1-1279 RPGDLGPVGY QGMKGEKGSR GEKGSRGPKG YKGEKGKRGV DGVDGMKGET ENSBTAP00000015668/1-1027 RPGDLGPVGY QGMKGEKGSR GEKGSRGPKG YKGEKGKRGM DGVDGMKGET 751 800 ENSTTRP00000004659/1-1025 GYPGLPGCKG SPGFDGIQGP LGPKGDAGAF GLKGGKGEPG ADGEPGRPGN bmy_21243T0/1-921 GYPGLSGCKG SPGFNGVQGP SGPKGDAGAF GLKGDKGEPG ADGEPGRPGN ENSP00000355180/1-1028 GYPGLPGCKG SPGFDGIQGP PGPKGDPGAF GLKGEKGEPG ADGEAGRPGS BACU004347/1-1279 GYPGLSGCKG SPGFDGIQGP SGPKGDAGAF GLKGDKGESG ADGEPGRPGN ENSBTAP00000015668/1-1027 GFPGLPGCKG SPGFDGIQGP PGPKGDPGAF GLKGQKGEPG ADGEPGRPGS 801 850 ENSTTRP00000004659/1-1025 TGPPGDEGEP GAPGPLGEKG EAGDEGNAGP DGPPGERGGP GERGPRGTPG bmy_21243T0/1-921 TGPTGDEGEP GEPGPLGEKG EAGDEGNAGP DGPPGEKGGP GERGPRGTSG ENSP00000355180/1-1028 SGPSGDEGQP GEPGPPGEKG EAGDEGNPGP DGAPGERGGP GERGPRGTPG BACU004347/1-1279 TGPTGDE--- ---------- -----GNAGP DGPPGER--- ---------- ENSBTAP00000015668/1-1027 TGPPGDEGEP GEPGPPGEKG EAGDEGNAGP DGAPGERGGP GERGPRGTPG 851 900 ENSTTRP00000004659/1-1025 ARGPRGDLGE AGPQGDQGRE GPIGIPGDPX XXXXXXXXXX XXXXXXXXXX bmy_21243T0/1-921 ARGPRGDPGE AGPQGDQGRE GPVGIPGDPG EAGPTGPKGY RGDEGPPGTE ENSP00000355180/1-1028 TRGPRGDPGE AGPQGDQGRE GPVGVPGDPG EAGPIGPKGY RGDEGPPGSE BACU004347/1-1279 --------GE AGPQGDQGRE GPVGVPGDPG EAGPTGPKGY RGEEGPPGTE ENSBTAP00000015668/1-1027 ARGPRGDPGE AGPQGDQGRE GPVGVPGDPG EAGPIGPKGY RGDEGPPGTE 901 950 ENSTTRP00000004659/1-1025 GPGGASGPPG PPGDPGLMGE RGEDGPPGNG TEGFPGFPGY PGSMGPPGIN bmy_21243T0/1-921 GPGGASGPPG PPGDPGLMGE RGEDGPPGNG TEGFPGFPGY PGSRGPPGIN ENSP00000355180/1-1028 GARGAPGPAG PPGDPGLMGE RGEDGPAGNG TEGFPGFPGY PGNRGAPGIN BACU004347/1-1279 GPGGASGPPG PPGDPGLMGE RGEDGPPGNG TEGFPGFPGY PGSRGPPGIN ENSBTAP00000015668/1-1027 GPKGAPGPAG PPGDPGLMGE RGEDGPPGNG TEGFPGFPGY PGSRGPPGIN 951 1000 ENSTTRP00000004659/1-1025 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXGPPGHIG bmy_21243T0/1-921 GTKGYPGLKG DEGEAGDPGE DNNDISPRGA KGAKGYRGPE GPQ------- ENSP00000355180/1-1028 GTKGYPGLKG DEGEAGDPGD DNNDIAPRGV KGAKGYRGPE GPQGPPGHQG BACU004347/1-1279 GTKGYPGLKG DEGEAGDPGE DNNDISPRGA KGAKGYRGPE GPQGPPGHMG ENSBTAP00000015668/1-1027 GTKGYPGLKG DEGEAGDPGE DNNDIAARGA KGAKGYRGPE GPQGPPGHVG 1001 1050 ENSTTRP00000004659/1-1025 PPGPDECEIL D--IIMKM-- ----CSC--- ---------- ---------- bmy_21243T0/1-921 -----ECEIL D--IIMKM-- ----CWVL-- ---------- ---------- ENSP00000355180/1-1028 PPGPDECEIL D--IIMKM-- ----CSC--- ---------- ---------- BACU004347/1-1279 PPGPDLSRGL TPWVVEPLAH APTALGCQPD SSSPRSLTQP GTGGREFSPV ENSBTAP00000015668/1-1027 PPGPDECEIL D--IIMKM-- ----CSC--- ---------- ---------- 1051 1100 ENSTTRP00000004659/1-1025 ---------- ---------- ---------- CECQCGPIDI LFVLDSSESI bmy_21243T0/1-921 ---------- ---------G GAPRLSPPPP TECKCGPIDI LFVLDSSESI ENSP00000355180/1-1028 ---------- ---------- ---------- CECKCGPIDL LFVLDSSESI BACU004347/1-1279 PPGPRGPAPR GGPALEGVPG GALGLSPPPP TECKCGPIDI LFVLDSSESI ENSBTAP00000015668/1-1027 ---------- ---------- ---------- CECKCGPIDI LFVLDSSESI 1101 1150 ENSTTRP00000004659/1-1025 GLQNFEISKD FIVKVIDRLS RDELVKFEPG QSHAGVVQYS HNQMQEHVDL bmy_21243T0/1-921 GLQNFEISKD FIVKVIDRLS RDELVK---- ---------- ---------- ENSP00000355180/1-1028 GLQNFEIAKD FVVKVIDRLS RDELVKFEPG QSYAGVVQYS HSQMQEHVSL BACU004347/1-1279 GLQNFEISKD FIVKVIDRLS RDELVKFEPG QSHAGVVQYS HNQMQEHVDL ENSBTAP00000015668/1-1027 GLQNFEIAKD FIVKVIDRLS KDELVKFEPG QSHAGVVQYS HNQMQEHVDL 1151 1200 ENSTTRP00000004659/1-1025 RDPNIMTAQD LXXXXXXXXR WMAEGTFTG- ALQYTR-RLM PPTQN-RIAL bmy_21243T0/1-921 ---------- ---------- ---------- ---------- ---------- ENSP00000355180/1-1028 RSPSIRNVQE L-KEAIKSLQ WMAGGTFTGE ALQYTRDQLL PPSPNNRIAL BACU004347/1-1279 RDPNIRNAQD L-KEAIKKLQ WMGGGTFTGE ALQYTRRRLL PPTQNDRIAL ENSBTAP00000015668/1-1027 RDPNIRNAQD L-KEAIKKLQ WMGGGTFTGE ALQYTRSRLL PPTPNNRIAL 1201 1250 ENSTTRP00000004659/1-1025 VLTDGRSDTQ RDTTPLSVLC GPDIQVVSVG IKDVFGLAAG SDQLNVISCQ bmy_21243T0/1-921 ---------- ---------- -----VVSVG IKDVFGLAAG SDQLNVISCQ ENSP00000355180/1-1028 VITDGRSDTQ RDTTPLNVLC SPGIQVVSVG IKDVFDFIPG SDQLNVISCQ BACU004347/1-1279 VITDGRSDTQ RDTIPLSVLC GPDIQVVSVG IKDVFGLAAG SDQLNVISCQ ENSBTAP00000015668/1-1027 VITDGRSDTQ RDTTPLSVLC GPDIQVVSVG IKDVFGLAAG SDQLNVISCQ 1251 1300 ENSTTRP00000004659/1-1025 GLAP-QGRPG ISLVKENYAE LLDDGFLKNV TAQICIDKKC PDYTCPITFS bmy_21243T0/1-921 GLAP-QGRPG ISLVKENYAE LLDDGFLKNV TAQICIDKKC PDYTCPITFS ENSP00000355180/1-1028 GLAPSQGRPG LSLVKENYAE LLEDAFLKNV TAQICIDKKC PDYTCPITFS BACU004347/1-1279 GLAP-QGRPG ISLVKENYAE LLDDGFLKNI TAQICI---- ------VTFS ENSBTAP00000015668/1-1027 GLAP-QGRPG ISLVKENYAE LLDDGFLKNI TAQICIDKKC PDYSCPITFS 1301 1350 ENSTTRP00000004659/1-1025 SPTDITILLD GSASVGSHNF DTSKRFAKRL AERFLTAGQT GAGQEVRVAV bmy_21243T0/1-921 SPTDITILLD GSASVGSHNF DTSKRFAKRL AERFLTAGQT DPGQEVRVAV ENSP00000355180/1-1028 SPADITILLD GSASVGSHNF DTTKRFAKRL AERFLTAGRT DPAHDVRVAV BACU004347/1-1279 SPTDITILLD GSASVGSHNF DTSKRFAKRL AERFLTAGQT DPGQEVRVAV ENSBTAP00000015668/1-1027 SPADITILLD GSASVGSHNF DITKRFAKRL AERFLTASRT DPGQDVRVAV 1351 1400 ENSTTRP00000004659/1-1025 VQYSGTGQQR PERAALQFVQ NYTVLASALD TMDFFNDATD VTDALGYVTR bmy_21243T0/1-921 VQYSGTGQQL PERAALQFLQ NYTMLASALD TMDFFNDATD VTDALGYVTR ENSP00000355180/1-1028 VQYSGTGQQR PERASLQFLQ NYTALASAVD AMDFINDATD VNDALGYVTR BACU004347/1-1279 VQYSGTG--- ---------- ---------- ---------- ---------- ENSBTAP00000015668/1-1027 VQYSGTGQQR PERAALQFLQ NYTVLANTVD SMDFFNDATD VMDALGYVTR 1401 1450 ENSTTRP00000004659/1-1025 FYREASPGAT KKRLLLFSDG NSQGATAATI EKAVQEAQRA GIEIFMVVVG bmy_21243T0/1-921 FYREASSGAA KKRLLLFSDG NSQGATAATI EKAVQEAQRA GIEIFMVVVG ENSP00000355180/1-1028 FYREASSGAA KKRLLLFSDG NSQGATPAAI EKAVQEAQRA GIEIFVVVVG BACU004347/1-1279 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015668/1-1027 FYREASSNAA KKRLLLFSDG NSQGATPAAI EKAVQEAQRA GVEIFAVVVG 1451 1500 ENSTTRP00000004659/1-1025 PQVNEPHVRV LVTGKAAEYD VAFGERHLFR VPSYQALLRG VFYQTVSRKV bmy_21243T0/1-921 PQVNEPHVRV LVTGKAAEYD VAFGERHLFR VPSYQALLRG VFYQTVSRKV ENSP00000355180/1-1028 RQVNEPHIRV LVTGKTAEYD VAYGESHLFR VPSYQALLRG VFHQTVSRKV BACU004347/1-1279 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015668/1-1027 RQVNEPHVRV LVTGKAAEYD VVFGERHLFR VPSYQALLRG VFYQTVSRKV 1501 1550 ENSTTRP00000004659/1-1025 ALG bmy_21243T0/1-921 ALG ENSP00000355180/1-1028 ALG BACU004347/1-1279 --- ENSBTAP00000015668/1-1027 ALD