KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:40 2014 Check: 00 .. Name: ENSP00000221957/1-434 Len: 498 Check: 5408 Weight: 1.00 Name: ENSTTRP00000014673/1-436 Len: 498 Check: 4977 Weight: 1.00 Name: ENSBTAP00000015669/1-438 Len: 498 Check: 9115 Weight: 1.00 Name: bmy_06946T0/1-498 Len: 498 Check: 9319 Weight: 1.00 Name: BACU002596/1-343 Len: 498 Check: 2224 Weight: 1.00 // 1 50 ENSP00000221957/1-434 MSADGAEADG STQVTVEEPV QQPSVVDRVA SMPLISSTCD MVSAAYASTK ENSTTRP00000014673/1-436 MSTNETEATA STQVSAEEPV QQPSVVDRVA GMPLISSTCH MVSATYMSTK ENSBTAP00000015669/1-438 MSADETEATA STQVTAEEPV QQPSVVDRVA GMPLISSTCN MVTAAYTSTK bmy_06946T0/1-498 MSTNETEATA STQVSAEEPV QQPSVVDRVA GMPLISSTCH MVSAAYMSTK BACU002596/1-343 MSTNETEATA STQVSAEEPV QQ-------- ---------- ---------- 51 100 ENSP00000221957/1-434 ESYPHIKTVC DAAEKGVRTL TAAAVSGAQP ILSKLE---- ---------- ENSTTRP00000014673/1-436 ESHPHVKTVC DAAEKGVKTL TAVAVSGAQP ILSKLE---- ---------- ENSBTAP00000015669/1-438 ESYPHVKTVC DAAEKGVKTL TAAAVSGAQP ILSKLE---- ---------- bmy_06946T0/1-498 ESHPHVKTVC DAAEKGVKTL TAVAVSGAQP ILSKLXXXXX XXXXXXXXEA BACU002596/1-343 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000221957/1-434 ---------- ---------- ---------- ---------P QIASASEYAH ENSTTRP00000014673/1-436 ---------- ---------- ---------- ---------P QLTSASEYAH ENSBTAP00000015669/1-438 ---------- ---------- ---------- ---------P QLTSASEYAH bmy_06946T0/1-498 GRRAGAVTSA VCLPSPAAPQ SHRPVNTPTG GWTNWRRICP SCSSHRRRNG BACU002596/1-343 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000221957/1-434 RGLDKLEENL P-------IL QQPTEKVLAD TKELVSSKVS GAQEMVS--- ENSTTRP00000014673/1-436 RGLDKLEENL P-------IL QQPPEKVLAD TKELVSSKVS GAREAVSNTV ENSBTAP00000015669/1-438 RGLDKLEENL P-------IL QQPPEKVLAD TKELVSSKVS GARQAVSSTV bmy_06946T0/1-498 VGWGALEQNL NPCLTTKGVN KLGMWKVLAD TKELVSSKVS GAREAVSNTV BACU002596/1-343 ---------- ---------- ------VLAD TKELVSSKVS GAREAVSNTM 201 250 ENSP00000221957/1-434 -SAKDTVATQ LSEAVDATRG AVQSGVDKTK SVVTGGVQSV MGSRLGQMVL ENSTTRP00000014673/1-436 SSARDTMASR VTEAVEVTRG AVQSGVDMTK SMLTSGVHSV MGSRVGQMVL ENSBTAP00000015669/1-438 SSAKDTVASR VTEAVDVTRG AVQSGVDLTK SMVTSGVHSV VGSRVGQMVL bmy_06946T0/1-498 SSAKDTMASR VTEAVDVTRG AVQSGVDMTK SMVTSGVHSV MGSRVGQMVL BACU002596/1-343 SSAKDTMASR VTEAVDVTRG AVQSGVDMTK SMVTSGVHSV MGSRVGQMVL 251 300 ENSP00000221957/1-434 SGVDTVLGKS EEWADNHLPL TDAELARIAT SLDGFDVASV QQQRQEQSYF ENSTTRP00000014673/1-436 SGMDTVLGKS EEWVDNHLPM TDAELARLAT SLEGFDIASV AQQRQEQSYF ENSBTAP00000015669/1-438 SGVDTVLGKS EEWVDNHLPM TDAELARLAT SLEGFDIASV AQQRQEQSYF bmy_06946T0/1-498 SGMDTVLGKS EEWVDNHLPM TDAELARLAT SLEGFDIASV AQQRQEQSYF BACU002596/1-343 SGVDTVLGKS EEWVDNHLPM TDAELARLAT SLEGFDIASV AQQRQEQSYF 301 350 ENSP00000221957/1-434 VRLGSLSERL RQHAYEHSLG KLRATKQRAQ EALLQLSQVL SLMETVKQGV ENSTTRP00000014673/1-436 VRLGSLSERL RQRAYEHSLG KLQNTRQRAQ EALLQLSQTL SLXXXXXXXX ENSBTAP00000015669/1-438 VRLGSLSERL RQRAYEHSLG KLQNTRQRAQ EALHQLSQTL ILMETIKQGV bmy_06946T0/1-498 VRLGSLSERL RQRAYEHSLG KLQSTRQRAQ EALLQLSQTL SLMETVKQGV BACU002596/1-343 VRLGSLSERL RQRAYEHSLG KLQSTRQRAQ EALLQLSQTL SLMETVKQGV 351 400 ENSP00000221957/1-434 DQKLVEGQEK LHQMWLSWNQ KQLQGPEKEP PKPEQVESRA LTMFRDIAQQ ENSTTRP00000014673/1-436 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXQVESQT LTMFRDVAQQ ENSBTAP00000015669/1-438 DQKLVEGQEK LHQMWLGWNQ KRLQGPEENA AKPEQVESQT LAMFRDITQQ bmy_06946T0/1-498 DQKLVEGQEK LHQMWLSWNQ KQLQGPEEDA AKPEQVESQT LTMFRDIAQQ BACU002596/1-343 DQKLVEGQEK LHQMWLSWNQ KQLQGPEEDA AKPE-VESQT LTMFRDIAQQ 401 450 ENSP00000221957/1-434 LQATCTSLGS SIQGLPTNVK DQVQQARRQV EDLQATFSSI HSFQDLSSSI ENSTTRP00000014673/1-436 LQTTCASLGS SLQGLPAHVK DQALQARRQV EDLQATFSGI HSFKDLSSSI ENSBTAP00000015669/1-438 LQTTCASLGS GLQGLPAHIK DQALQARQQV EDLQATFSGI HSFQDLSSSV bmy_06946T0/1-498 LQTTCASLGS SLQGLPAHVK DQALQARRQV EDLQATFSGI HSFKDLSGSI BACU002596/1-343 LQTTCASLGS SLQGLPAHVR DQALQARRQV EDLQATFSGI HSFKDLSGSI 451 500 ENSP00000221957/1-434 LAQSRERVAS AREALDHMVE YVAQNTPVTW LVGPFAPGIT EKAPEEKK ENSTTRP00000014673/1-436 LTQSRGQ-AR AREALDHVVE YVAQNTPITW LVGPFAPGIT -KAPEEKK ENSBTAP00000015669/1-438 LTRSREQVAR AREALDHLVE YVAQNTPIMW LVGPFAPGIV EKAPEKKK bmy_06946T0/1-498 LTQSRGQVAR AREALDHMVE YVAQSTPITW LVGPFAPGIT EKAPEEKK BACU002596/1-343 LTQSRGQVAR AREALDHMVE YVAQSTPITW LVGPFAPGIT EKAPEEKK