KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:42 2014 Check: 00 .. Name: bmy_15970T0/1-511 Len: 565 Check: 7962 Weight: 1.00 Name: ENSTTRP00000003145/1-491 Len: 565 Check: 6930 Weight: 1.00 Name: ENSP00000270066/1-520 Len: 565 Check: 743 Weight: 1.00 Name: BACU002084/1-520 Len: 565 Check: 1282 Weight: 1.00 Name: ENSBTAP00000015684/1-520 Len: 565 Check: 9397 Weight: 1.00 // 1 50 bmy_15970T0/1-511 ---MRRAGSP R-DLISVRPR EIFSTSSSLG PAFLRCRFRD APTGSGLTGT ENSTTRP00000003145/1-491 VTAVDEEGEV IEDEISMVKK QTYRVRTL-- PGLLRVPQKE QDSNSGLSPL ENSP00000270066/1-520 ---MSESGHS QPGLYGIERR RRWKEPGSGG PQNL------ --SGPGGRER BACU002084/1-520 ---MSESGHS QPGLYGIDRR RRWKEPGPGG PQNL------ --SGPGGRER ENSBTAP00000015684/1-520 ---MSESGHS QPGLYGIERR RRWKEPGPGG PQNL------ --SGPGGRER 51 100 bmy_15970T0/1-511 RSLPLRSRVP RLHLQAGGLR WNLLVPTPPP SRRARAPLHP RNQSAAALAE ENSTTRP00000003145/1-491 RQVGGWQRRD K----HGGH- ---------- ---------- --------AE ENSP00000270066/1-520 DYIAPWERER R----DASEE TSTSVMQKTP IILSKPP--- --------AE BACU002084/1-520 DYIAPWDRER R----DGSEE TSTAVMQKTP IILSKPP--- --------AE ENSBTAP00000015684/1-520 DYIAPWERER R----DGSEE TSTAVMQKTP IILSKPP--- --------AE 101 150 bmy_15970T0/1-511 RSKQPPTPTA PATPPAPAPL EKPIVLMKPR EEGKGPAATA SASTPEGTAP ENSTTRP00000003145/1-491 NPHHPLKASS RA-----APL EKPIVLMKPR EEGKGPAATA NASTPEGTAP ENSP00000270066/1-520 RSKQPPPPTA PAAPPAPAPL EKPIVLMKPR EEGKGPVAVT GASTPEGTAP BACU002084/1-520 RSKQPPTPTA PATPPTPPPL EKPIVLMKPR EEGKGPAATA SASTPEGTAP ENSBTAP00000015684/1-520 RSKQPPPPAA PAAPPAPAPL EKPIVLMKPR EEGKGPAATT SASTPEGTAP 151 200 bmy_15970T0/1-511 PPPAAPAPPK GEKEGQRPTQ PVYQIQNRGM GTAAPAAMDP VVGQAKLLPP ENSTTRP00000003145/1-491 PPPAAPAPPK GEKEGQRPTQ PVYQIQNRGM GTAAPAAMDP VVGQAKLLPP ENSP00000270066/1-520 PPPAAPAPPK GEKEGQRPTQ PVYQIQNRGM GTAAPAAMDP VVGQAKLLPP BACU002084/1-520 PPPAAPAPPK GEKEGQRPTQ PVYQIQNRGM GTAAPAAMDP VVGQAKLLPP ENSBTAP00000015684/1-520 PPPAAPVPPK GEKEGQRPTQ PVYQIQNRGM GTAAPAAMDP VVGQAKLLPP 201 250 bmy_15970T0/1-511 ERMKHSIKLV DDQMNWCDSA IEYLLDQTDV LVVGVLGLQG TGKSMVMSLL ENSTTRP00000003145/1-491 ERMKHSIKLV DDQMNWCDSA IEYLLDQTDV LMVGV-GLQG TGS--MMSLL ENSP00000270066/1-520 ERMKHSIKLV DDQMNWCDSA IEYLLDQTDV LVVGVLGLQG TGKSMVMSLL BACU002084/1-520 ERMKHSIKLV DDQMNWCDSA IEYLLDQTDV LVVGVLGLQG TGKSMVMSLL ENSBTAP00000015684/1-520 ERMKHSIKLV DDQMNWCDSA IEYLLDQTDV LVVGVLGLQG TGKSMVMSLL 251 300 bmy_15970T0/1-511 SANTPEEDQR AYVFRAQSAE MKERGGNQTS GIDFFITQER IVFLDTQPIL ENSTTRP00000003145/1-491 SANT-EEDQX XXXFRAQSAE MKERGGNQTS GIDFFITQER IVFLDTQPIL ENSP00000270066/1-520 SANTPEEDQR TYVFRAQSAE MKERGGNQTS GIDFFITQER IVFLDTQPIL BACU002084/1-520 SANTPEEDQR AYVFRAQSTE MKERGGNQTS GIDFFITQER IVFLDTQPIL ENSBTAP00000015684/1-520 SANTPEEDQR AYVFRAQSAE MKERGGNQTS GIDFFITQER IVFLDTQPIL 301 350 bmy_15970T0/1-511 SPSILDHLIN NDRKLPPEYS LPHTYVEMQS LQIAAFLFTV CHVVIVVQDW ENSTTRP00000003145/1-491 SPSILDHLIN NDRKLPPEYS LPHTYVEMQS LQIAAFLFTV CHVVIVVQDW ENSP00000270066/1-520 SPSILDHLIN NDRKLPPEYN LPHTYVEMQS LQIAAFLFTV CHVVIVVQDW BACU002084/1-520 SPSILDHLIN NDRKLPPEYS LPHTYVEMQS LQIAAFLFTV CHVVIVVQDW ENSBTAP00000015684/1-520 SPSILDHLIN NDRKLPPEYN LPHTYVEMQS LQIAAFLFTV CHVVIVVQDW 351 400 bmy_15970T0/1-511 FTDLSLY--- ---------- ------RFLQ TAEMVKPSTP SPSHESSSSS ENSTTRP00000003145/1-491 FTDLSLYRLW DMGGRQQSTN LSPQTPRFLQ TAEMVKPSTP SPSHESSSSS ENSP00000270066/1-520 FTDLSLY--- ---------- ------RFLQ TAEMVKPSTP SPSHESSSSS BACU002084/1-520 FTDLSLY--- ---------- ------RFLQ TAEMVKPSTP SPSHESSSSS ENSBTAP00000015684/1-520 FTDLSLY--- ---------- ------RFLQ TAEMVKPSTP SPSHESSSSS 401 450 bmy_15970T0/1-511 GSDEGTEYYP HLVFLQNKAR REDFCPRKLR QMHLMIDQLM AHSHLRYKGT ENSTTRP00000003145/1-491 GSDEGTEYYP HLVFLQNKA- REDF--PKLR QMH-MIDQLM AHSHLRYKGT ENSP00000270066/1-520 GSDEGTEYYP HLVFLQNKAR REDFCPRKLR QMHLMIDQLM AHSHLRYKGT BACU002084/1-520 GSDEGTEYYP HLVFLQNKAR REDFCPRKLR QMHLMIDQLM AHSHLRYKGT ENSBTAP00000015684/1-520 GSEEGAEYYP HLVFLQNKAR REDFCPRKLR QMHLMIDQLM AHSHLRYKGT 451 500 bmy_15970T0/1-511 LSMLQCNVFP GLPPDFLDSE VNLFLMPFMD SEAESETPPR AGT------- ENSTTRP00000003145/1-491 LSMLQCNVFP GLPPDFLDSE VNLFLMPFMD SEAESETPPR AGPSSSPLFS ENSP00000270066/1-520 LSMLQCNVFP GLPPDFLDSE VNLFLVPFMD SEAESENPPR AGPGSSPLFS BACU002084/1-520 LSMLQCNVFP GLPPDFLDSE VNLFLMPFMD SEAESETPPR AGPGSSPLFS ENSBTAP00000015684/1-520 LSMLQCNVFP GLPPDFLDSE VNLFLMPFMD SETESETPPR AGPGSSPLFS 501 550 bmy_15970T0/1-511 -------VPP REDLVRR--- ----ETRP-- --------TW FHYAARIWDG ENSTTRP00000003145/1-491 LLPGYRGHPS FQSLVSKLRS QVMSMARPQL SHTILTEKN- ---------- ENSP00000270066/1-520 LLPGYRGHPS FQSLVSKLRS QVMSMARPQL SHTILTEKNW FHYAARIWDG BACU002084/1-520 LLPGYRGHPS FQSLVSKLRS QVMSMARPQL SHTILTEKNW FHYAARIWDG ENSBTAP00000015684/1-520 LLPGYRGHPS FQSLVSKLRS QVMSMARPQL SHTILTEKNW FHYAARIWDG 551 600 bmy_15970T0/1-511 VKKSSALAEY SRLLA ENSTTRP00000003145/1-491 ---------- ----- ENSP00000270066/1-520 VRKSSALAEY SRLLA BACU002084/1-520 VKKSSALAEY SRLLA ENSBTAP00000015684/1-520 VKKSSALAEY SRLLA