KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:44 2014 Check: 00 .. Name: ENSTTRP00000015938/1-521 Len: 545 Check: 4421 Weight: 1.00 Name: ENSP00000261854/1-520 Len: 545 Check: 4645 Weight: 1.00 Name: ENSBTAP00000015701/1-511 Len: 545 Check: 5161 Weight: 1.00 Name: bmy_13046T0/1-494 Len: 545 Check: 9315 Weight: 1.00 Name: BACU003206/1-369 Len: 545 Check: 3128 Weight: 1.00 // 1 50 ENSTTRP00000015938/1-521 MGLQQPLTPA -AALLWGFLL PLTAAQEAIL HASGNGMPSP SKDYCMLYNP ENSP00000261854/1-520 MGPQRRLSPA GAALLWGFLL QLTAAQEAIL HASGNGT--- TKDYCMLYNP ENSBTAP00000015701/1-511 ---------- --ALLKSLVL GKTAAHEAIL HASGNGRPSP SKDYCMLYNP bmy_13046T0/1-494 ---------- ---------- ---------- ------MPSP SKDYCMLYNP BACU003206/1-369 ---------- -MNVGYTSIL Q-TAAQEAIL HASGNDMPSP SKDYCMLYNP 51 100 ENSTTRP00000015938/1-521 HWTALPSTLE NATSISLMNL TTTPLCNLSD IPPDGIKNKA VVVQWGTCHF ENSP00000261854/1-520 YWTALPSTLE NATSISLMNL TSTPLCNLSD IPPVGIKSKA VVVPWGSCHF ENSBTAP00000015701/1-511 HWTSLPSTLE NATSMSLMNL TTTPLCNVSD IPPDGIKNKA VVVQWGTCHF bmy_13046T0/1-494 HWTALPSTLE NATSISLRNL TTTPLCNLSD IPPDGIKNKA VVVQWGTCHF BACU003206/1-369 HWTALPSTLE NATSISLMNL TTTPLCNLSD IPPDGIKNKA VVVQWGTCHF 101 150 ENSTTRP00000015938/1-521 LEKARIAQTG GAEALLVANN SVLFPPSGNK SEFHDVKILI AFINHKDFKD ENSP00000261854/1-520 LEKARIAQKG GAEAMLVVNN SVLFPPSGNR SEFPDVKILI AFISYKDFRD ENSBTAP00000015701/1-511 LEKAKIAQTG GAEALLVANN SVLFPPSGNK SEFLDVKILI AFINHKDFKD bmy_13046T0/1-494 LEKARIAQTG GAEALLVANN SVLFPPSGNK SEFHDVKILI AFINHKDFKD BACU003206/1-369 LEKARIAQTG GAEALLVANN SVLFPPSGNK SEFHDVKILI AFINHKDFKD 151 200 ENSTTRP00000015938/1-521 TKQTLGDNIT VKMYSPSWPN FDYTMVVIFV IAVFTVALGG YWSGLIELES ENSP00000261854/1-520 MNQTLGDNIT VKMYSPSWPN FDYTMVVIFV IAVFTVALGG YWSGLVELEN ENSBTAP00000015701/1-511 MKQTLGDNIM VKMYSPSWPN FDYTMVVIFV IAVFTVALGG YWSGLIELEN bmy_13046T0/1-494 MKQTLGDNIT VKMYSPSWPN FDYTMVVIFV IAVFTVALGG YWSGLIELES BACU003206/1-369 MKQTLGDNIT VKMYSPSWPN FDYTMVVIFV IAVFTVALGG YWSGLIEL-- 201 250 ENSTTRP00000015938/1-521 MKAVTNTEDR EMRKKKEEYF TFSPLTVVIF VVICCVMMVL LYFFYKWLVY ENSP00000261854/1-520 LKAVT-TEDR EMRKKKEEYL TFSPLTVVIF VVICCVMMVL LYFFYKWLVY ENSBTAP00000015701/1-511 MKAMTNTEDR EMRKKKEEYF TFSPLTVIIF VVICCIMMVL LYFFYKWLVY bmy_13046T0/1-494 MKAVTNTEDR EMRKKKEEYF TFSPLTVVIF VVICCIMMVL LYFFYKWLVY BACU003206/1-369 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000015938/1-521 VMIAIFCIAS AMSLYNCLAA LIQKIPCGQC MIMCRDKSIE VRLIFLSGLC ENSP00000261854/1-520 VMIAIFCIAS AMSLYNCLAA LIHKIPYGQC TIACRGKNME VRLIFLSGLC ENSBTAP00000015701/1-511 VMIAIFCIAS AMSLYNCLAA LVRKIPCGQC TITCRGKSIE VRLIFLSGLC bmy_13046T0/1-494 VMIAIFCIAS AMSLYNCLAA LIQKIPCGQC MIMCRGKSIE VRLIFLSGLC BACU003206/1-369 ---------- ---------- ---------- -IMCRGKSIE VRLIFLSGLC 301 350 ENSTTRP00000015938/1-521 IAIAVVWAVF RNEDRWAWIL QDILGIA-F- -CLNLIKTLK LPNFKSCVIL ENSP00000261854/1-520 IAVAVVWAVF RNEDRWAWIL QDILGIA-F- -CLNLIKTLK LPNFKSCVIL ENSBTAP00000015701/1-511 IAVAVVWAVF RNEDRWAWIL QDILGIA-F- -CLNLIKTLK LPNFKSCVIL bmy_13046T0/1-494 IAIAXVWAVF RNEDRIK--L QIVITLNAFK KCSN------ -----SCVIL BACU003206/1-369 IAIAVVWAVF RNEDRWAWIL QDILGIA-F- -CLNLIKTLK LPNF------ 351 400 ENSTTRP00000015938/1-521 LSLLLLYDVF FVFITPFITK NGESIMIELA AGPFGNN--- ---------- ENSP00000261854/1-520 LGLLLLYDVF FVFITPFITK NGESIMVELA AGPFGNN--- ---------- ENSBTAP00000015701/1-511 LGLLLLYDVF FVFITPFITK NGESIMVELA AGPFGNN--- ---------- bmy_13046T0/1-494 LSLLLLYDVF FVFITPFITK NGESIMVELA AGPFGNNEKN DGNLVEATAQ BACU003206/1-369 ---------- ---------K NGESIMVELA AGPFGNN--- ---------- 401 450 ENSTTRP00000015938/1-521 -----EKLPV VIRVPKLAYF SVMSVCLMPV SILGFGDIIV PGLLIAYCRR ENSP00000261854/1-520 -----EKLPV VIRVPKLIYF SVMSVCLMPV SILGFGDIIV PGLLIAYCRR ENSBTAP00000015701/1-511 -----EKLPV VIRVPKLAYF SVMSVCLMPV SILGFGDIIV PGLLIAYCRR bmy_13046T0/1-494 PSAPHEKLPV VIRVPKLAYF SVMSVCLMPV SILGFGDIIV PGLLIAYCRR BACU003206/1-369 -----EKLPV VIRVPKLAYF SVMSVCLMPV SILGFGDIIV P--------- 451 500 ENSTTRP00000015938/1-521 FDVQAGSS-I YYVSSTVXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000261854/1-520 FDVQTGSSYI YYVSSTVAYA IGMILTFVVL VLMKKGQPAL LYLVPCTLIT ENSBTAP00000015701/1-511 FDVEIGSS-V YYVSSTIAYA IGMILTFVVL VLMKKGQPAL LYLVPCTLIT bmy_13046T0/1-494 FDVQAGSS-I YYVSSTVAYA VGMILTFVVL VLMKKGQPAL LYLVPCTLIT BACU003206/1-369 ---------- -------AYA VGMILTFVVL VLMKKGQPAL LYLVPCTLIT 501 550 ENSTTRP00000015938/1-521 XXXXXXXXXX XXXXXXXXXX XMMDHLDYAT NEENPVTAGE QIVQ- ENSP00000261854/1-520 ASVVAWRRKE MKKFWKGNSY QMMDHLDCAT NEENPVISGE QIVQQ ENSBTAP00000015701/1-511 ASLVAWRRKE MKKFWKGSSY QMMDHLDYAT NEENPGTAGE QIVQQ bmy_13046T0/1-494 ASVVAWRRKE MKKFWKGNGY QMMDHLDYAT NEENPVTAGE QIVQ- BACU003206/1-369 ASVVAWRRKE MKKFWKGNGY QVCAYI-LVT KLSYDIA--- -----